BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489790
Length=1119
Score E
Sequences producing significant alignments: (Bits) Value
AT4G09180.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bin... 1738 0.0
> AT4G09180.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr4:5847401-5849724 FORWARD LENGTH=1125
Length=1125
Score = 1738 bits (941), Expect = 0.0
Identities = 1065/1122 (95%), Gaps = 19/1122 (2%)
Strand=Plus/Plus
Query 1 aaaaaaataaaacagagcaagaaac-aaaaaaaaaatgtaaagaaagagaaaaaaaaCTT 59
||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||
Sbjct 15 AAAAAAATAAAACAGAGCAAGAAACAAAAAAAAAAATGTAAAGAAAGAGAAAAAAAGCTT 74
Query 60 TTGTAGTCTTGTCTATTGAAACCAGAGAAAAGCCAAAGGGGGGATGCAATCAACATCCGT 119
| |||| |||||||||||||||||||||||||||| |||||||||| ||||||||||
Sbjct 75 TCGTAG---TGTCTATTGAAACCAGAGAAAAGCCAAA--GGGGATGCAACCAACATCCGT 129
Query 120 CGGTAGTAGCGGCGGTGGTGATGACGGAGGAGCTGGTAgaggaggaggaggaggaggGCT 179
||||||||||||||||||||| ||||||||| || | |||||||||||||||||||
Sbjct 130 CGGTAGTAGCGGCGGTGGTGACGACGGAGGA---GG--CA-GAGGAGGAGGAGGAGGGCT 183
Query 180 GAGTCGAAGTGGACTATCTCGGATCCGTTCAGCTCCAGCAACTTGGCTTGAGGCTTTACT 239
||| |||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 184 AAGTAGAAGTGGACTATCTCGGATCCGTTCAGCTCCAGCGACTTGGCTTGAAGCTTTACT 243
Query 240 TGAGGAAGATGAAGAAGAGTCTTTGAAACCTAATCTTGGTCTCACCGATTTGCTTACCGG 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 244 TGAGGAAGATGAAGAAGAGTCTTTGAAACCTAATCTTGGTCTCACCGATTTGCTTACCGG 303
Query 300 GAACTCGAACGATTTACCGACAAGTCGTGGCTCGTTCGAGTTCCCGATTCCTGTTGAGCA 359
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 304 GAACTCGAACGATTTACCGACAAGTCGCGGCTCGTTCGAGTTCCCGATTCCTGTTGAGCA 363
Query 360 AGGTTTGTATCAACAAGGTGGGTTTCACCGACAGAATAGTACTCCGGCGGATTTTCTTAG 419
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 364 AGGGTTGTATCAACAAGGTGGGTTTCACCGACAGAATAGTACTCCGGCGGATTTTCTTAG 423
Query 420 TGGTTCTGATGGATTTATACAAAGCTTTGGGATTCCGGCGAATTGCGATTACTTATCGGG 479
|||||||||||||||||| |||||||||||||||| |||||||| |||||||||||||||
Sbjct 424 TGGTTCTGATGGATTTATCCAAAGCTTTGGGATTCAGGCGAATTACGATTACTTATCGGG 483
Query 480 GAATATCGATGTTTCTCCGGGAAGTAAGCGGTCTAGAGAAATGGAAGCACTCTTCTCTTC 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 484 GAATATCGATGTTTCTCCGGGAAGTAAGCGGTCTAGAGAAATGGAAGCACTCTTCTCTTC 543
Query 540 TCCTGAGTTTACTTCTCAAATGAAAGGAGAGCAAAGTAGCGGTCAAGTTCCTGCCGGGGT 599
|||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| ||
Sbjct 544 TCCTGAGTTTACTTCTCAAATGAAAGGAGAGCAAAGCAGCGGTCAAGTTCCTACCGGAGT 603
Query 600 ATCAGGCATGACGGATATGAACATGGAGAACCTTATGGAGGACTCTGTTGCCTTTAGGGT 659
|||| ||||| |||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 604 ATCAAGCATGTCGGATATGAACATGGAGAACCTTATGGAGGACTCTGTTGCTTTTAGGGT 663
Query 660 TCGGGCTAAACGTGGTTGTGCAACTCATCCCCGCAGCATTGCCGAGAGGGTACGAAGGAC 719
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 664 TCGGGCTAAACGTGGTTGCGCAACTCATCCCCGCAGCATTGCCGAGAGGGTACGAAGGAC 723
Query 720 GCGGATTAGTGATCGGATAAGGAAGCTACAAGAGCTTGTACCTAACATGGACAAGCAAAC 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 724 GCGGATTAGTGATCGGATAAGGAAGCTACAAGAGCTTGTACCTAACATGGACAAGCAAAC 783
Query 780 CAACACTGCAGACATGTTAGAGGAAGCTGTAGAATACGTGAAAGTTCTTCAAAGGCAGAT 839
||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 784 CAACACTGCAGACATGTTAGAAGAAGCAGTAGAATACGTGAAAGTTCTTCAAAGGCAGAT 843
Query 840 TCAGGAGTTAACAGAAGAACAGAAGAGGTGCACATGCATACCTAAGGAAGAACAATAAGG 899
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 844 CCAGGAGTTAACAGAAGAACAGAAGAGGTGCACATGCATACCTAAGGAAGAACAATAAGG 903
Query 900 TTTGCTCCTGATTTGTTTTATACCTGCTAAATAGCAATGATCTGATCGaaaaaaaTCGAA 959
|||||||||||||||||||||| |||| || |||||||||||||||||||| |||||
Sbjct 904 TTTGCTCCTGATTTGTTTTATATTTGCTTAACGGCAATGATCTGATCGAAAAAT-TCGAA 962
Query 960 AGATGATCTTTTTGCTTGAATT-AGATGGGTGTAAGGTTGAAAAGTATATTATTTGATAA 1018
|||||||||| ||||||||| |||||| ||| | ||||||||||||||||||||||||
Sbjct 963 AGATGATCTTA--GCTTGAATTTAGATGGATGTCATGTTGAAAAGTATATTATTTGATAA 1020
Query 1019 AATGGATGTAGGTGTAAAATAAAAATTTTGTACAATAATGAAGAAAGTTCaaaaa-aaTT 1077
| ||||||||||||||| |||||| |||||||||||||||||||||||| ||||| ||||
Sbjct 1021 A-TGGATGTAGGTGTAATATAAAATTTTTGTACAATAATGAAGAAAGTT-AAAAAGAATT 1078
Query 1078 AATGAAAACATATATTCTTTATAACATTAGTGAAATGACTTT 1119
|||||||||||||||||||||| | |||||||||||||||||
Sbjct 1079 AATGAAAACATATATTCTTTATGATATTAGTGAAATGACTTT 1120
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54869195685
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5