BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg489792

Length=552
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G09320.1 | Symbols: NDPK1 | Nucleoside diphosphate kinase fa...   774    0.0  


> AT4G09320.1 | Symbols: NDPK1 | Nucleoside diphosphate kinase 
family protein | chr4:5923400-5924532 FORWARD LENGTH=700
Length=700

 Score =  774 bits (419),  Expect = 0.0
 Identities = 493/528 (93%), Gaps = 7/528 (1%)
 Strand=Plus/Plus

Query  25   TTTTTGCCTCCTACGAGTCACAAGTAAGCa-aaaa-aaTGGAGCAAACTTTCATCATGAT  82
            |||||||||||||||| ||||||||||  | |||| ||||||||||||||| || |||||
Sbjct  48   TTTTTGCCTCCTACGAATCACAAGTAATAAGAAAACAATGGAGCAAACTTTTATTATGAT  107

Query  83   CAAGCCTGACGGCGTCCAGAGAGGACTCATCGGTGAAGTCATCTCCAGGTTTGAGAAGAA  142
            |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct  108  CAAGCCTGACGGCGTCCAGAGAGGACTCATCGGTGAAGTCATCTGCAGGTTTGAGAAGAA  167

Query  143  GGGTTTCACTTTGAAAGGTCTGAAGTTGATCAGTGTAGAGCGATCTTTTGCTGAGAAGCA  202
            |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct  168  GGGTTTCACTTTGAAAGGTCTGAAGTTGATCAGTGTAGAGAGATCTTTTGCTGAGAAGCA  227

Query  203  CTACGAAGACTTGTCTTCAAAGCCTTTCTTCAGTGGACTTGTTGATTACATTGTGTCTGG  262
            |||||||||||| ||||||||| |||||||||||||||| ||||| |||||||| || ||
Sbjct  228  CTACGAAGACTTATCTTCAAAGTCTTTCTTCAGTGGACTCGTTGACTACATTGTATCCGG  287

Query  263  CCCTGTTGTTGCCATGATCTGGGAAGGAAAGAATGTTGTGTTGACGGGAAGAAAGATTAT  322
            |||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||| ||
Sbjct  288  CCCTGTTGTTGCTATGATCTGGGAAGGAAAGAATGTTGTCTTGACCGGAAGAAAGATCAT  347

Query  323  CGGAGCTACCAACCCAGCAAACT-CTGAGCCTGGAACTATCCGTGGGGACTTTGCTATTG  381
             ||||||||||||||||||  || ||||||||||||||||||||||||||||||||||||
Sbjct  348  TGGAGCTACCAACCCAGCAG-CTTCTGAGCCTGGAACTATCCGTGGGGACTTTGCTATTG  406

Query  382  ACATTGGCAGGAATGTTATCCACGGGAGTGACGCTGTCGAGAGTGCGAGAAAGGAGATTG  441
            ||||||||||||| || ||||| || |||||| ||||||||||||| |||||||||||||
Sbjct  407  ACATTGGCAGGAACGTGATCCATGGTAGTGACTCTGTCGAGAGTGCAAGAAAGGAGATTG  466

Query  442  CTTTGTGGTTCCCTGATGGACCTGTCAACTGGCAGAGCAGTGTTCACCCTTGGATCTATG  501
            |||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||
Sbjct  467  CTTTGTGGTTCCCTGATGGACCTGTCAACTGGCAGAGCAGCGTTCACCCTTGGGTCTATG  526

Query  502  AATGATCTTGATGATCTGTTGCTTTTTCAATAGTGTGTTTTCGACATT  549
            ||  | ||||||||||||||||||||||| ||||||||||||||||||
Sbjct  527  AA--A-CTTGATGATCTGTTGCTTTTTCAGTAGTGTGTTTTCGACATT  571



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 26473395469


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5