BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489795
Length=850
Score E
Sequences producing significant alignments: (Bits) Value
AT4G09460.1 | Symbols: AtMYB6, MYB6 | myb domain protein 6 | ch... 1171 0.0
AT1G35515.1 | Symbols: HOS10, MYB8 | high response to osmotic s... 438 3e-122
AT1G22640.1 | Symbols: ATMYB3, MYB3 | myb domain protein 3 | ch... 394 7e-109
AT2G16720.1 | Symbols: MYB7, ATMYB7, ATY49 | myb domain protein... 246 2e-64
AT5G54230.1 | Symbols: MYB49, AtMYB49 | myb domain protein 49 |... 99.0 7e-20
> AT4G09460.1 | Symbols: AtMYB6, MYB6 | myb domain protein 6 |
chr4:5992966-5994258 FORWARD LENGTH=984
Length=984
Score = 1171 bits (634), Expect = 0.0
Identities = 724/767 (94%), Gaps = 7/767 (1%)
Strand=Plus/Plus
Query 1 TTGAtctcttctctcttctcttacaccatcttcttcttcATTCACCATGGGAAGATCTCC 60
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 11 TTGATCTCTTCTCTCTTCTCTTACACCA---TCTTCTTCATTCACCATGGGAAGATCTCC 67
Query 61 TTGTTGTGAAAAAGCTCACACAAACAAAGGAGCTTGGACTAAAGAAGAAGATCAACGTCT 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 68 TTGTTGTGAAAAAGCTCACACAAACAAAGGAGCTTGGACTAAAGAAGAAGATCAACGTCT 127
Query 121 CGTCGATTATATTCGTAATCACGGTGAAGGTTGTTGGCGATCTCTTCCTAAATCCGCTGG 180
||| |||||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 128 CGTAGATTATATCCGTAATCACGGTGAAGGTTGTTGGCGTTCTCTTCCTAAATCCGCTGG 187
Query 181 ATTGTTGCGTTGTGGTAAAAGTTGTAGATTGAGATGGATTAATTACCTTCGTCCTGATCT 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 188 ATTGTTGCGTTGTGGTAAAAGTTGTAGATTGAGATGGATTAATTACCTTCGTCCTGATCT 247
Query 241 TAAACGTGGTAATTTTACTGATGAAGAAGATCAAATCATCATCAAACTCCATAGCTTACT 300
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 248 TAAACGTGGTAATTTTACTGATGATGAAGATCAAATCATCATCAAACTCCATAGCTTACT 307
Query 301 CGGTAACAAATGGTCATTGATAGCTGGAAGATTACCAGGAAGAACAGATAATGAAATCAA 360
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 308 CGGTAACAAATGGTCATTGATAGCTGGAAGATTACCAGGAAGAACAGATAACGAAATAAA 367
Query 361 GAATTATTGGAACACTCATATTAAAAGAAAGCTTCTTAGTCATGGGATTGATCCACAAAC 420
|||||||||||||||||||||||| || |||||||||||||| || ||||||||||||||
Sbjct 368 GAATTATTGGAACACTCATATTAAGAGGAAGCTTCTTAGTCACGGTATTGATCCACAAAC 427
Query 421 TCATCGTCCGATTAACGATTCCAAAACGGTGCCGTCTCAGGTTGTTGTTCCTAGTCAAAA 480
|||||||| ||||||||| |||||||||||| ||||||| ||||||||||||| ||||||
Sbjct 428 TCATCGTCAGATTAACGAATCCAAAACGGTGTCGTCTCAAGTTGTTGTTCCTATTCAAAA 487
Query 481 CGACGCCGTTGAGTATTCTTTTTCCAATTTAGCCGTTAAACCGAAGACGGAAAATTCCTC 540
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 488 CGATGCCGTTGAGTATTCTTTTTCCAATTTAGCCGTTAAACCGAAGACGGAAAATTCCTC 547
Query 541 CGATAACGGAGCTTCGACTAGTAGTACGACGACGGATGAGGATCTCCGGCAGAATGGGGA 600
||||||||||||||||||||| | ||||||||||| |||||||||||||||||||||||
Sbjct 548 CGATAACGGAGCTTCGACTAGCGGCACGACGACGGACGAGGATCTCCGGCAGAATGGGGA 607
Query 601 GTGTTATAATAGTGATAATTCAGGAAAAATAGAGCTGAATTTGGATTTAACTCTCGGGTT 660
||||||| ||||||||||||||||| | ||| |||||||||||||||||||||| |||||
Sbjct 608 GTGTTATTATAGTGATAATTCAGGACATATAAAGCTGAATTTGGATTTAACTCTTGGGTT 667
Query 661 TGGATTCGGGTCGGGTCGGGTTGTTGGAGCCGGGTCATCGGCTGATTC-AAAGCCGTGGC 719
||||| | ||||||||||| | || |||| |||||||||||||||||| ||| ||||||
Sbjct 668 TGGATCCTGGTCGGGTCGGATAGTCGGAGTCGGGTCATCGGCTGATTCTAAA-CCGTGGT 726
Query 720 GGGATCAGGTGATG-ACGGCGCGTTTGTCACAGTTGTAATAATTTGt 765
| || | ||||||| | |||||||||||||| |||||||||||||||
Sbjct 727 GCGACCCGGTGATGGA-GGCGCGTTTGTCACTGTTGTAATAATTTGT 772
> AT1G35515.1 | Symbols: HOS10, MYB8 | high response to osmotic
stress 10 | chr1:13077926-13080265 FORWARD LENGTH=639
Length=639
Score = 438 bits (237), Expect = 3e-122
Identities = 350/405 (86%), Gaps = 6/405 (1%)
Strand=Plus/Plus
Query 47 ATGGGAAGATCTCCTTGTTGTGAAAAAGCTCACACAAACAAAGGAGCTTGGACTAAAGAA 106
||||||||||| || ||||||||||| ||||||| ||||||||||| ||||||||||||
Sbjct 1 ATGGGAAGATCACCATGTTGTGAAAAGGCTCACATGAACAAAGGAGCATGGACTAAAGAA 60
Query 107 GAAGATCAACGTCTCGTCGATTATATTCGTAATCACGGTGAAGGTTGTTGGCGATCTCTT 166
|||||||||||||| | |||||||| |||||||| |||||||| | |||||| ||||||
Sbjct 61 GAAGATCAACGTCTTATTGATTATATACGTAATCATGGTGAAGGCTCTTGGCGTTCTCTT 120
Query 167 CCTAAATCCGCTGGATTGTTGCGTTGTGGTAAAAGTTGTAGATTGAGATGGATTAATTAC 226
|||||||||| ||| |||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 121 CCTAAATCCGTTGGGTTGTTGCGTTGTGGAAAAAGTTGTAGATTAAGATGGATTAATTAC 180
Query 227 CTTCGTCCTGATCTTAAACGTGGTAATTTTACTGATGAAGAAGATCAAATCATCATCAAA 286
||||||||||||||||||||||| ||||| ||||||| ||||| |||||||| |||||
Sbjct 181 CTTCGTCCTGATCTTAAACGTGGAAATTTCACTGATGGTGAAGAGCAAATCATTGTCAAA 240
Query 287 CTCCATAGCTTACTCGGTAACAAATGGTCATTGATAGCTGG-AAGATTACCAGGAAGAAC 345
|| ||||| ||| | || ||||||||||| ||||| ||||| || |||||| ||||||||
Sbjct 241 CTTCATAGTTTATTTGGCAACAAATGGTCTTTGATTGCTGGGAA-ATTACCGGGAAGAAC 299
Query 346 AGATAATGAAATCAAGAATTATTGGAACACTCATATTAAAAGAAAGCTTCTTAGTCATGG 405
|||||||| || || |||||||||||||||||||| ||||| |||||||||| | |||
Sbjct 300 CGATAATGAGATTAAAAATTATTGGAACACTCATATAAAAAGGAAGCTTCTTAACCGTGG 359
Query 406 GATTGATCCACAAACTCATCG-TCCGATTAACGATTCC-AAAACG 448
||||| ||| ||||||| || | |||| | ||| || ||||||
Sbjct 360 TATTGACCCAAAAACTCA-CGGTTCGATCATCGAG-CCTAAAACG 402
> AT1G22640.1 | Symbols: ATMYB3, MYB3 | myb domain protein 3 |
chr1:8006195-8007428 FORWARD LENGTH=1077
Length=1077
Score = 394 bits (213), Expect = 7e-109
Identities = 336/397 (85%), Gaps = 2/397 (1%)
Strand=Plus/Plus
Query 47 ATGGGAAGATCTCCTTGTTGTGAAAAAGCTCACACAAACAAAGGAGCTTGGACTAAAGAA 106
||||||||||| || || || || |||||||||| ||||||||||||||||||||||||
Sbjct 95 ATGGGAAGATCACCATGCTGCGAGAAAGCTCACATGAACAAAGGAGCTTGGACTAAAGAA 154
Query 107 GAAGATCAACGTCTCGTCGATTATATTCGTAATCACGGTGAAGGTTGTTGGCGATCTCTT 166
|||||||| | ||| || ||||| || ||||| |||||||||||||| |||||||||||
Sbjct 155 GAAGATCAGCTTCTTGTTGATTACATCCGTAAACACGGTGAAGGTTGCTGGCGATCTCTC 214
Query 167 CCTAAATCCGCTGGATTGTTGCGTTGTGGTAAAAGTTGTAGATTGAGATGGATTAATTAC 226
||| |||||||||| | |||||||| |||||||||||||||||||| |||||
Sbjct 215 CCTCGCGCCGCTGGATTACAAAGATGTGGTAAGAGTTGTAGATTGAGATGGATGAATTAT 274
Query 227 CTTCGTCCTGATCTTAAACGTGGTAATTTTACTGATGAAGAAGATCAAATCATCATCAAA 286
|| | || ||||| ||| | || ||||||||||| ||||||||| || ||||||||||
Sbjct 275 CTAAGACCAGATCTCAAAAGAGGCAATTTTACTGAAGAAGAAGATGAACTCATCATCAAG 334
Query 287 CTCCATAGCTTACTCGGTAACAAATGGTCATTGATAGCTGGAAGATTACCAGGAAGAACA 346
||||||||||| ||||||||||||||||| || |||||||| ||||||||||||||||||
Sbjct 335 CTCCATAGCTTGCTCGGTAACAAATGGTCTTTAATAGCTGGGAGATTACCAGGAAGAACA 394
Query 347 GATAATGAAATCAAGAATTATTGGAACACTCATATTAAAAGAAAGCTTCTTAGTCATGGG 406
||||| || |||||||| ||||||||||||||||| || || |||||||| || | ||||
Sbjct 395 GATAACGAGATCAAGAACTATTGGAACACTCATATCAAGAGGAAGCTTCTCAGCCGTGGG 454
Query 407 ATTGATCCACAAA-CTCATCGTCCGATTAACGATTCC 442
||||||||| || |||| |||| ||| ||||| |||
Sbjct 455 ATTGATCCA-AACTCTCACCGTCTGATCAACGAATCC 490
> AT2G16720.1 | Symbols: MYB7, ATMYB7, ATY49 | myb domain protein
7 | chr2:7255529-7256580 REVERSE LENGTH=980
Length=980
Score = 246 bits (133), Expect = 2e-64
Identities = 302/381 (79%), Gaps = 22/381 (6%)
Strand=Plus/Plus
Query 46 CATGGGAAGATCTCCTTGTTGTGAAAAAGCTCACACAAACAAAGGAGCTTGGACTAAAGA 105
|||||||||||||||||| || || |||| |||| |||||||| ||||||||||||||
Sbjct 30 CATGGGAAGATCTCCTTGCTGCGAGAAAGAACACATGAACAAAGGTGCTTGGACTAAAGA 89
Query 106 AGAAGATCA-ACGTCTCGTCGATTATATTC--GTAATCACGGTGAAGGTTGTTGGCGATC 162
||||||| | | | || ||| ||| | || || ||||||||||||||||||||||||
Sbjct 90 AGAAGATGAGA-GACTAGTCTCTTACA-TCAAGT-CTCACGGTGAAGGTTGTTGGCGATC 146
Query 163 TCTTCCTAAATCCGCTGGAT-TG-TTGCGTTGTGGTAAAAGTTGTAGA-TT-GAGATGGA 218
|||||||| | ||||||| | | || || || |||||||| || | || | | ||||
Sbjct 147 TCTTCCTAGAGCCGCTGG-TCTCCTT-CGCTGCGGTAAAAGCTGCCGTCTTCG-G-TGGA 202
Query 219 TTAATTACCTTCGTCCTGATCTTAAACGTGGTAATTTTACTGATGAAGAAGATCAAATCA 278
|||| || || || |||||||| ||| | || || ||||| |||| |||||| || | |
Sbjct 203 TTAACTATCTCCGACCTGATCTCAAAAGAGGAAACTTTACACATGATGAAGATGAACTTA 262
Query 279 TCATCAAACTCCATAGCTTACTCGGTAACAAATGGTCATTGATAGCTG-GAAGATTACCA 337
||||||| || |||||| | || || ||||| ||||| ||||| || | || |||||||
Sbjct 263 TCATCAAGCTTCATAGCCTCCTAGGCAACAAGTGGTCTTTGATTGCGGCGA-GATTACCT 321
Query 338 GGAAGAACAGATAATGAAATCAAGAATTATTGGAACACTCATATTAAA-AGAAAGCTTCT 396
|||||||||||||| || |||||||| || |||||||| ||||| ||| || |||||| |
Sbjct 322 GGAAGAACAGATAACGAGATCAAGAACTACTGGAACACACATAT-AAAGAGGAAGCTT-T 379
Query 397 T-AGTCAT-GGGATTGATCCA 415
| || || ||||||||||||
Sbjct 380 TGAG-CAAAGGGATTGATCCA 399
> AT5G54230.1 | Symbols: MYB49, AtMYB49 | myb domain protein 49
| chr5:22016250-22017933 REVERSE LENGTH=1155
Length=1155
Score = 99.0 bits (53), Expect = 7e-20
Identities = 76/86 (88%), Gaps = 6/86 (7%)
Strand=Plus/Plus
Query 332 TTACCAGGAAGAACAGATAATGAAATCAAGAATTATTGGAACACTCATATTAAAA-GAAA 390
||||||||||||||||||||||||||||| || ||||||||||| |||||||||| ||||
Sbjct 374 TTACCAGGAAGAACAGATAATGAAATCAAAAACTATTGGAACACACATATTAAAAAGAAA 433
Query 391 GCTTCTTA-GTCATGGG-ATTGATCC 414
|| |||| | ||||| ||||||||
Sbjct 434 -CT-CTTACGA-ATGGGGATTGATCC 456
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41443171275
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5