BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489799
Length=436
Score E
Sequences producing significant alignments: (Bits) Value
AT4G09467.1 | Symbols: | Carbohydrate-binding X8 domain superf... 606 4e-173
AT4G09464.1 | Symbols: | Carbohydrate-binding X8 domain superf... 606 4e-173
AT4G09466.1 | Symbols: | Carbohydrate-binding X8 domain superf... 584 2e-166
AT4G09465.1 | Symbols: | Carbohydrate-binding X8 domain superf... 573 4e-163
AT4G09462.1 | Symbols: | Carbohydrate-binding X8 domain superf... 558 1e-158
> AT4G09467.1 | Symbols: | Carbohydrate-binding X8 domain superfamily
protein | chr4:6005905-6006442 FORWARD LENGTH=538
Length=538
Score = 606 bits (328), Expect = 4e-173
Identities = 403/438 (92%), Gaps = 9/438 (2%)
Strand=Plus/Plus
Query 1 ACATAGATATCCAAAAACAAAATTAGTTGAATATAATTCAATAAACTATCAATTTTAAAA 60
|||||||||||||||||| |||||||||||||| |||||||| | ||| ||||||||
Sbjct 5 ACATAGATATCCAAAAACTAAATTAGTTGAATACAATTCAAT----TGTCAGTTTTAAAA 60
Query 61 ATGGCCAAAATATCATCACCTTTGGCACTCCTT-TTCATCATCCTATCTTCCATCATGAT 119
|||||||||||||||||||||||||| || ||| |||||||| ||||||||||||||||
Sbjct 61 ATGGCCAAAATATCATCACCTTTGGCTCT-CTTATTCATCATGTTATCTTCCATCATGAT 119
Query 120 CAACCACT-TCCATGTGGCCAGTTCCAAAACATGGTGTATAGCAACTCTCACCGCAACAA 178
|||||| | |||||||||| ||||||||||||||||||||||||||||| | |||||| |
Sbjct 120 CAACCA-TATCCATGTGGCGAGTTCCAAAACATGGTGTATAGCAACTCTAATCGCAACGA 178
Query 179 ATGCGCAACTACAAGCAAATATTAATTTTGGATGTAGTCAAGGAGTTGATTGTAGGCCAA 238
||||||| || ||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 179 ATGCGCAGCTGCAAGCAAATATTAATTTTGCATGTAGTCAAGGAGTTGATTGTAGGCCAA 238
Query 239 TCCGACCCGGTGGATCCTGTTTTATCCCTAACACTCTTGTAAATCATGCTTCGTTTGTGA 298
||||||| |||||||| |||||||||||||| | ||||| ||||||||| ||||||||||
Sbjct 239 TCCGACCTGGTGGATCTTGTTTTATCCCTAATAATCTTGCAAATCATGCATCGTTTGTGA 298
Query 299 TGAACTCTTATTATCAGAGCCATGGTCGTACCAATCAGGCATGTAGTTTCAAAAATACCG 358
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 299 TGAACTCTTATTATCAGACCCATGGTCGTACCAATCAGGCATGTAGTTTCAAAAATACCG 358
Query 359 GCACATTTGCTGCTACCGATCCTAGTTTCGGTAAATGTGTATATGCGTCTTAGAAATATG 418
|||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| |
Sbjct 359 GCACATTTGCTGCTACCGATCCTAGTTTTGGTAAATGTGTGTATGCGTCTTAGAAATTT- 417
Query 419 TATTTGGTTTCGATAATT 436
||||| | ||||||||||
Sbjct 418 TATTTTGCTTCGATAATT 435
> AT4G09464.1 | Symbols: | Carbohydrate-binding X8 domain superfamily
protein | chr4:5999071-5999608 FORWARD LENGTH=538
Length=538
Score = 606 bits (328), Expect = 4e-173
Identities = 403/438 (92%), Gaps = 9/438 (2%)
Strand=Plus/Plus
Query 1 ACATAGATATCCAAAAACAAAATTAGTTGAATATAATTCAATAAACTATCAATTTTAAAA 60
|||||||||||||||||| |||||||||||||| |||||||| | ||| ||||||||
Sbjct 5 ACATAGATATCCAAAAACTAAATTAGTTGAATACAATTCAAT----TGTCAGTTTTAAAA 60
Query 61 ATGGCCAAAATATCATCACCTTTGGCACTCCTT-TTCATCATCCTATCTTCCATCATGAT 119
|||||||||||||||||||||||||| || ||| |||||||| ||||||||||||||||
Sbjct 61 ATGGCCAAAATATCATCACCTTTGGCTCT-CTTATTCATCATGTTATCTTCCATCATGAT 119
Query 120 CAACCACT-TCCATGTGGCCAGTTCCAAAACATGGTGTATAGCAACTCTCACCGCAACAA 178
|||||| | |||||||||| ||||||||||||||||||||||||||||| | |||||| |
Sbjct 120 CAACCA-TATCCATGTGGCGAGTTCCAAAACATGGTGTATAGCAACTCTAATCGCAACGA 178
Query 179 ATGCGCAACTACAAGCAAATATTAATTTTGGATGTAGTCAAGGAGTTGATTGTAGGCCAA 238
||||||| || ||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 179 ATGCGCAGCTGCAAGCAAATATTAATTTTGCATGTAGTCAAGGAGTTGATTGTAGGCCAA 238
Query 239 TCCGACCCGGTGGATCCTGTTTTATCCCTAACACTCTTGTAAATCATGCTTCGTTTGTGA 298
||||||| |||||||| |||||||||||||| | ||||| ||||||||| ||||||||||
Sbjct 239 TCCGACCTGGTGGATCTTGTTTTATCCCTAATAATCTTGCAAATCATGCATCGTTTGTGA 298
Query 299 TGAACTCTTATTATCAGAGCCATGGTCGTACCAATCAGGCATGTAGTTTCAAAAATACCG 358
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 299 TGAACTCTTATTATCAGACCCATGGTCGTACCAATCAGGCATGTAGTTTCAAAAATACCG 358
Query 359 GCACATTTGCTGCTACCGATCCTAGTTTCGGTAAATGTGTATATGCGTCTTAGAAATATG 418
|||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| |
Sbjct 359 GCACATTTGCTGCTACCGATCCTAGTTTTGGTAAATGTGTGTATGCGTCTTAGAAATTT- 417
Query 419 TATTTGGTTTCGATAATT 436
||||| | ||||||||||
Sbjct 418 TATTTTGCTTCGATAATT 435
> AT4G09466.1 | Symbols: | Carbohydrate-binding X8 domain superfamily
protein | chr4:6003632-6004167 FORWARD LENGTH=536
Length=536
Score = 584 bits (316), Expect = 2e-166
Identities = 399/438 (91%), Gaps = 9/438 (2%)
Strand=Plus/Plus
Query 1 ACATAGATATCCAAAAACAAAATTAGTTGAATATAATTCAATAAACTATCAATTTTAAAA 60
|||||||||||||||||| |||||||||||||| |||||||| | ||| ||||||||
Sbjct 3 ACATAGATATCCAAAAACTAAATTAGTTGAATACAATTCAAT----TGTCAGTTTTAAAA 58
Query 61 ATGGCCAAAATATCATCACCTTTGGCACTCCTT-TTCATCATCCTATCTTCCATCATGAT 119
|||||||||||||||||||||||||| || ||| |||||||| ||||||||||||||||
Sbjct 59 ATGGCCAAAATATCATCACCTTTGGCTCT-CTTATTCATCATGTTATCTTCCATCATGAT 117
Query 120 CAACCACT-TCCATGTGGCCAGTTCCAAAACATGGTGTATAGCAACTCTCACCGCAACAA 178
|||||| | |||||||||| ||||||||||||||||||||||||||||| | |||||| |
Sbjct 118 CAACCA-TATCCATGTGGCGAGTTCCAAAACATGGTGTATAGCAACTCTAATCGCAACGA 176
Query 179 ATGCGCAACTACAAGCAAATATTAATTTTGGATGTAGTCAAGGAGTTGATTGTAGGCCAA 238
||||||| || ||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 177 ATGCGCAGCTGCAAGCAAATATTAATTTTGCATGTAGTCAAGGAGTTGATTGTAGGCCAA 236
Query 239 TCCGACCCGGTGGATCCTGTTTTATCCCTAACACTCTTGTAAATCATGCTTCGTTTGTGA 298
||||||| | |||||| |||||||||||||| | ||||| ||||||||| ||||||||||
Sbjct 237 TCCGACCTGATGGATCTTGTTTTATCCCTAATAATCTTGCAAATCATGCATCGTTTGTGA 296
Query 299 TGAACTCTTATTATCAGAGCCATGGTCGTACCAATCAGGCATGTAGTTTCAAAAATACCG 358
|||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||
Sbjct 297 TGAACTCTTATTATCAGACCCATGGTCGTACCAATCAGATATGTAGTTTCAAAAATACCG 356
Query 359 GCACATTTGCTGCTACCGATCCTAGTTTCGGTAAATGTGTATATGCGTCTTAGAAATATG 418
||||||||||||||||| |||||||||| ||||||||||| |||||||||||||| | |
Sbjct 357 GCACATTTGCTGCTACCAATCCTAGTTTTGGTAAATGTGTGTATGCGTCTTAGAACTTT- 415
Query 419 TATTTGGTTTCGATAATT 436
||||| ||||||||||||
Sbjct 416 TATTTTGTTTCGATAATT 433
> AT4G09465.1 | Symbols: | Carbohydrate-binding X8 domain superfamily
protein | chr4:6001351-6001761 FORWARD LENGTH=411
Length=411
Score = 573 bits (310), Expect = 4e-163
Identities = 380/413 (92%), Gaps = 8/413 (2%)
Strand=Plus/Plus
Query 1 ACATAGATATCCAAAAACAAAATTAGTTGAATATAATTCAATAAACTATCAATTTTAAAA 60
|||||||||||||||||| |||||||||||||| |||||||| | ||| ||||||||
Sbjct 5 ACATAGATATCCAAAAACTAAATTAGTTGAATACAATTCAAT----TGTCAGTTTTAAAA 60
Query 61 ATGGCCAAAATATCATCACCTTTGGCACTCCTT-TTCATCATCCTATCTTCCATCATGAT 119
|||||||||||||||||||||||||| || ||| |||||||| ||||||||||||||||
Sbjct 61 ATGGCCAAAATATCATCACCTTTGGCTCT-CTTATTCATCATGTTATCTTCCATCATGAT 119
Query 120 CAACCACT-TCCATGTGGCCAGTTCCAAAACATGGTGTATAGCAACTCTCACCGCAACAA 178
||| || | |||||||||| ||||||||||||||||||||||||||||| | |||||| |
Sbjct 120 CAATCA-TATCCATGTGGCGAGTTCCAAAACATGGTGTATAGCAACTCTAATCGCAACGA 178
Query 179 ATGCGCAACTACAAGCAAATATTAATTTTGGATGTAGTCAAGGAGTTGATTGTAGGCCAA 238
||||||| || ||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 179 ATGCGCAGCTGCAAGCAAATATTAATTTTGCATGTAGTCAAGGAGTTGATTGTAGGCCAA 238
Query 239 TCCGACCCGGTGGATCCTGTTTTATCCCTAACACTCTTGTAAATCATGCTTCGTTTGTGA 298
||||||| |||||||| |||||||||||||| | ||||| ||||||||| ||||||||||
Sbjct 239 TCCGACCTGGTGGATCTTGTTTTATCCCTAATAATCTTGCAAATCATGCATCGTTTGTGA 298
Query 299 TGAACTCTTATTATCAGAGCCATGGTCGTACCAATCAGGCATGTAGTTTCAAAAATACCG 358
|||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||
Sbjct 299 TGAACTCTTATTATCAGACCCATGGTCGTACCAATAAGGCATGTAGTTTCAAAAATACCG 358
Query 359 GCACATTTGCTGCTACCGATCCTAGTTTCGGTAAATGTGTATATGCGTCTTAG 411
|||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 359 GCACATTTGCTGCTACCGATCCTAGTTTTGGTAAATGTGTGTATGCGTCTTAG 411
> AT4G09462.1 | Symbols: | Carbohydrate-binding X8 domain superfamily
protein | chr4:5996803-5997266 FORWARD LENGTH=464
Length=464
Score = 558 bits (302), Expect = 1e-158
Identities = 396/439 (90%), Gaps = 16/439 (4%)
Strand=Plus/Plus
Query 1 ACATAGATATCCAAAAACAAAATTAGTTGAATAT-AATTCAATAAACTATCAATTTTAAA 59
||||||||||||||| || ||||||||||||||| |||||||| | ||| |||||||
Sbjct 1 ACATAGATATCCAAACACTAAATTAGTTGAATATCAATTCAAT----TGTCAGTTTTAAA 56
Query 60 AATGGCCAAAATATCATCACCTTTGGCACTCCTT-TTCATCATCCTATCTTCCATCATGA 118
||||||||||||||||||||||||||| || ||| |||||||| |||||||||||||||
Sbjct 57 AATGGCCAAAATATCATCACCTTTGGCTCT-CTTATTCATCATGTTATCTTCCATCATGA 115
Query 119 TCAACCACTTCCATGTGGCCAGTTCCAAAACATGGTGTATAGCAACTCTCACCGCAACAA 178
|| | | ||||||||| ||||||||||||||||||||||||||||| | |||||| |
Sbjct 116 TC-A--A---CCATGTGGCGAGTTCCAAAACATGGTGTATAGCAACTCTAATCGCAACGA 169
Query 179 ATGCGCAACTACAAGCAAATATTAATTTTGGATGTAGTCAAGGAGTTGATTGTAGGCCAA 238
||||||| || ||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 170 ATGCGCAGCTGCAAGCAAATATTAATTTTGCATGTAGTCAAGGAGTTGATTGTAGGCCAA 229
Query 239 TCCGACCCGGTGGATCCTGTTTTATCCCTAACACTCTTGTAAATCATGCTTCGTTTGTGA 298
||| ||| |||||||| |||||||||||||| | ||||| ||||||||| ||||||||||
Sbjct 230 TCCAACCTGGTGGATCTTGTTTTATCCCTAATAATCTTGCAAATCATGCATCGTTTGTGA 289
Query 299 TGAACTCTTATTATCAGAGC-CATGGTCGTACCAATCAGGCATGTAGTTTCAAAAATACC 357
|||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct 290 TGAACTCTTATTATCAGA-CTCATGGTCGTACCAATCAGGCATGTAGTTTCAAAAATACC 348
Query 358 GGCACATTTGCTGCTACCGATCCTAGTTTCGGTAAATGTGTATATGCGTCTTAGAAATAT 417
|| |||||||||||||||||||||||||| ||||||||||| |||||||||||||||| |
Sbjct 349 GGAACATTTGCTGCTACCGATCCTAGTTTTGGTAAATGTGTGTATGCGTCTTAGAAATTT 408
Query 418 GTATTTGGTTTCGATAATT 436
||||| |||| |||||||
Sbjct 409 -TATTTTGTTTTGATAATT 426
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 20710312588
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5