BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489806
Length=1598
Score E
Sequences producing significant alignments: (Bits) Value
AT4G09520.1 | Symbols: | Cofactor-independent phosphoglycerate... 2303 0.0
AT3G30841.1 | Symbols: | Cofactor-independent phosphoglycerate... 1808 0.0
> AT4G09520.1 | Symbols: | Cofactor-independent phosphoglycerate
mutase | chr4:6024896-6027055 REVERSE LENGTH=1652
Length=1652
Score = 2303 bits (1247), Expect = 0.0
Identities = 1473/1579 (93%), Gaps = 27/1579 (2%)
Strand=Plus/Plus
Query 1 AACGACACACGACGTCACGACAATTCTCAACTTT-GAGCTGCAGACACAATTCCGGCGAC 59
|||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||
Sbjct 2 AACGACACACGACGTCACCACAATTCTCAACTTTGGAGCTGCAGACACAATTCCGGCGAC 61
Query 60 GATAACGATTCCAACGCCGCCGAAATCACTTGTGGCAAATGGAAGAAG-TCAAAAAGAGA 118
| | ||||||| || |||||||| ||||||| |||||||||||||| ||||||| |||
Sbjct 62 GTTTACGATTCTGACACCGCCGAACCCACTTGTAGCAAATGGAAGAAGTTCAAAAA-AGA 120
Query 119 GTTGCTTTTGTACTGATTGATGGTTTGGGAGATGTATCAATACCAAGATTAGGTTATAAA 178
||||| ||| |||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 121 GTTGCCTTTATACTAATTGATGGTTTGGGAGATGTATCAATACCAAGATTAGGTTACAAA 180
Query 179 ACTCCATTACAAGCAGCA-AACATACCTAATCTTGATGCAATTGCTTCATCTGGAATCAA 237
|| ||||| ||||||||| || |||||||| |||||||||||||||||| ||||||||||
Sbjct 181 ACACCATTGCAAGCAGCAGAA-ATACCTAACCTTGATGCAATTGCTTCAGCTGGAATCAA 239
Query 238 TGGTTTAATGGATCCAGTTGAAGTTGGATTAGGTTGTGGTAGTGACACTGCTCATCTTTC 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 TGGTTTAATGGATCCAGTTGAAGTTGGATTAGGTTGTGGTAGTGACACTGCTCATCTTTC 299
Query 298 TCTAATGGGTTATGATCCAAGAGTGTATTACCGAGGTCGCGGTGCGTTTGAATCTATGGG 357
||||||||||||||||||||||||||||||||| || || || |||||||||||||||||
Sbjct 300 TCTAATGGGTTATGATCCAAGAGTGTATTACCGTGGACGTGGCGCGTTTGAATCTATGGG 359
Query 358 TGCTGGATTAGCTATGTCACCAGGTGACATAGCTTTCAAGTCTAATTTTGCAACTTTGGA 417
||| ||||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 360 TGCAGGATTAGCTATGTCACCTGGTGACATAGCTTTCAAGTCAAATTTTGCAACTTTGGA 419
Query 418 TGAGGATTCTGGAGTTGTTGTTAGTAGGAGAGCTGATCGACATTTCGAAGAAGAAGGACC 477
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 420 TGAGGATTCTGGAGTTGTTGTTAGTAGAAGAGCTGATCGACATTTCGAAGAAGAAGGACC 479
Query 478 GATACTTTGTGCTGCTCTTGATGGAATGAAGCTTCCTTCTTTCCCTGAGTATGAAGTTAG 537
||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 480 TATACTTTGTGCTGCTCTTGATGGAATGAAGCTTCCATCATTCCCTGAGTATGAAGTTAG 539
Query 538 AGTCAGATATGCAACGGAACATAGATGTGGAGTGGTTGTAAAAGGGCCAAGACTTAGTGG 597
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 540 AGTCAGATATGCAACGGAACATAGATGTGGAGTGGTTGTAAAAGGGCCAAAACTTAGTGG 599
Query 598 GAATATATCTGGAACAGACCCGTTGAAGGATAATCGTTTGCTTCTTGAAGCTAAACCTTT 657
|||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 600 GAATATATCTGGAACAGATCCATTGAAGGATAATCGTTTGCTTCTTGAAGCTAAACCTTT 659
Query 658 GGATGAATCAGAAGAAGCTAATCACACAGCTAAAGTCGTTAACGAATTATCCAGGGAGAT 717
|||||||||||||||||||||||||||||| |||||||| |||||||||||| |||||||
Sbjct 660 GGATGAATCAGAAGAAGCTAATCACACAGCCAAAGTCGTGAACGAATTATCCCGGGAGAT 719
Query 718 ATCGCGCATTCTTGTTTCTCATCCGGTTAATGTAAAGAGAGCTGCACAAGGAAAGAATAT 777
|||||||||||||||||| || ||||||||||||||||||||||||||||| ||||||||
Sbjct 720 ATCGCGCATTCTTGTTTCCCACCCGGTTAATGTAAAGAGAGCTGCACAAGGCAAGAATAT 779
Query 778 TGCCAATCTTGTCCTTTTAAGAGGCTGTGGTATTCGAATCGAGGTTCCTCCTTTTCATGA 837
||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 780 TGCTAATCTTGTTCTTTTAAGAGGCTGTGGTATTCGAATCGAGGTTCCTCCTTTTCACGA 839
Query 838 GAAGCACGGTTTGTGGCCGTGTATGGTAGCACCAACGAAGATTATAGCCGGACTTGGTAT 897
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 GAAGCATGGTTTGTGGCCGTGTATGGTAGCACCAACGAAGATTATAGCCGGACTTGGTAT 899
Query 898 GTCCCTTGGTATTGACATTCTAGAAGCTCCGGGAGCCACTGGAGATTACCGGACACTTCT 957
||||||||||||||| ||||| ||||||| |||||||||||||||||||||||| |||||
Sbjct 900 GTCCCTTGGTATTGATATTCTTGAAGCTCTGGGAGCCACTGGAGATTACCGGACGCTTCT 959
Query 958 CACATCAAAAGCAATTGCTATAGCCAATGCGCTTTCAGCTCCTTTGAATCCCTGCCCAAA 1017
|||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 960 CACATCGAAAGCGATTGCTATAGCGAATGCGCTTTCAGCTCCTTTGAATCCCTGCCCAAA 1019
Query 1018 TGTCTTTGATCCAGCAGAAGACGGGCATAAACCGGGAAGGTCAGATGGTTACGATTTTGG 1077
||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 1020 TGTCTTTGAACCAGCAGAGGACGGGCATAAACCGGGAAGGTCAGATGGTTACGATTTCGG 1079
Query 1078 ATTCCTTCACATAAAGGCTATAGATGATGCAGGTCATGACAAGGCAACATTGTTCAAAGT 1137
||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1080 CTTCCTTCACATTAAGGCTATAGATGATGCAGGTCATGACAAGGCTACATTGTTCAAAGT 1139
Query 1138 CCGAGGCTTGGAAGCTGTGGATAAGGCGATACGTCAGCTCGCTAAGCTTCTATGGCATGC 1197
||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 1140 TCGAGGCTTGGAAGCTGTGGATAAAGCGATACGTCAGCTCGCTAAGCTTCTATGGCAAGC 1199
Query 1198 CGAATCTTCTTCAAATTACCAGTATTTCTTGTGTGTGACTGGTGATCATTCTACTCCAGT 1257
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1200 TGAATCTTCTTCAAATTACCAGTATTTCTTGTGTGTGACTGGTGATCATTCTACTCCAGT 1259
Query 1258 TGAGTATGGAGACCACAGCTTCGAGCCTGTCCCATTTACAATGTGCCGGCTAAAGGACTT 1317
|||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||
Sbjct 1260 TGAGTATGGAGACCACAGCTTCGAGCCTGTCCCATTCACAATGTGCCGGTTAAAGGACTT 1319
Query 1318 TGTGAGCGCGGTTGGAGGAGAATCAGC-CTTATTAGAGACGTCGTTGGACCCTTTTCCAC 1376
|||||| |||||||||||||||||||| || ||||||||| || || |||||||||||||
Sbjct 1320 TGTGAGAGCGGTTGGAGGAGAATCAGCTCT-ATTAGAGACATCTTTAGACCCTTTTCCAC 1378
Query 1377 TTCCAACG-A-AT-G--TC-ACTGAAA----CA--G-AA--GAAGAAGACG---GTGGGA 1418
|||||||| | || | || | ||||| || | || |||||||| | ||||||
Sbjct 1379 TTCCAACGGATATAGCATCCAGTGAAAATGTCATCGGAAAAGAAGAAGAAGACTGTGGGA 1438
Query 1419 AGAAGGAAGCTCCT-TCGGCGATTAGTGGAGACTCAGTCTCAGAATTGAATGAGATTGCA 1477
|| ||||||| || | ||||||||||||||| ||||||||||| ||||| |||||||||
Sbjct 1439 GGAGGGAAGCTTCTCT-GGCGATTAGTGGAGATTCAGTCTCAGAGTTGAACGAGATTGCA 1497
Query 1478 TCTGCAAGAGGATGTCTTGGCCGTTTCCATGGTGGTGAAATGATGGGAGTCATCACCAAG 1537
|||||||| |||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 1498 GCTGCAAGAAGATGTCTTGGCCGTTTCCATGGCGGTGAAATGATGGGAGTTATCACCAAG 1557
Query 1538 TTTCTTAAGCTAGATGTAT 1556
||||| ||| | |||||||
Sbjct 1558 TTTCTGAAGTTGGATGTAT 1576
> AT3G30841.1 | Symbols: | Cofactor-independent phosphoglycerate
mutase | chr3:12591392-12593527 FORWARD LENGTH=1722
Length=1722
Score = 1808 bits (979), Expect = 0.0
Identities = 1317/1480 (89%), Gaps = 24/1480 (2%)
Strand=Plus/Plus
Query 98 ATGGAAGAAGTCAAAAAGAGAGTTGCTTTTGTACTGATTGATGGTTTGGGAGATGTATCA 157
||| || |||||||||||||||| |||||||| || || |||||||| ||||||||| ||
Sbjct 122 ATGTAA-AAGTCAAAAAGAGAGTAGCTTTTGTTCTAATCGATGGTTTAGGAGATGTAACA 180
Query 158 ATACCAAGATTAGGTTATAAAACTCCATTACAAGCAGCAAACATACCTAATCTTGATGCA 217
||||||| | ||||||| ||||||||||||||||||||||||||||||||||| || |||
Sbjct 181 ATACCAAAACTAGGTTACAAAACTCCATTACAAGCAGCAAACATACCTAATCTCGACGCA 240
Query 218 ATTGCTTCATCTGGAATCAATGGTTTAATGGATCCAGTTGAAGTTGGATTAGGTTGTGGT 277
||||| ||| |||| ||||| ||||||||||||||||| |||||||| ||||||||||||
Sbjct 241 ATTGCATCAGCTGGTATCAACGGTTTAATGGATCCAGTAGAAGTTGGTTTAGGTTGTGGT 300
Query 278 AGTGACACTGCTCATCTTTCTCTAATGGGTTATGATCCAAGAGTGTATTACCGAGGTCGC 337
||||||||||||||||||||||| |||||||||||||||||||| |||||||| || ||
Sbjct 301 AGTGACACTGCTCATCTTTCTCTCATGGGTTATGATCCAAGAGTATATTACCGTGGACGT 360
Query 338 GGTGCGTTTGAATCTATGGGTGCTGGATTAGCTATGTCACCAGGTGACATAGCTTTCAAG 397
||||| ||||| ||||||||||| || |||||||||||||| ||||| ||||||||||||
Sbjct 361 GGTGCTTTTGAGTCTATGGGTGCAGGTTTAGCTATGTCACCTGGTGATATAGCTTTCAAG 420
Query 398 TCTAATTTTGCAACTTTGGATGAGGATTCTGGAGTTGTTGTTAGTAGGAGAGCTGATCGA 457
|||||||||||||||||||||||| | |||||||||||||||||| | ||||||||||||
Sbjct 421 TCTAATTTTGCAACTTTGGATGAGAAATCTGGAGTTGTTGTTAGTCGAAGAGCTGATCGA 480
Query 458 CATTTCGAAGAAGAAGGACCGATACTTTGTGCTGCTCTTGATGGAATGAAGCTTCCTTCT 517
||||||||||||||||| || ||||||||||| ||||||||||| | ||||||| |||
Sbjct 481 CATTTCGAAGAAGAAGGTCCTATACTTTGTGCAGCTCTTGATGGGTTAAAGCTTCAATCT 540
Query 518 TTCCCTGAGTATGAAGTTAGAGTCAGATATGCAACGGAACATAGATGTGGAGTGGTTGTA 577
||||||||||||||||| |||||||||||||| ||||||||| | ||||| || |||||
Sbjct 541 TTCCCTGAGTATGAAGTGAGAGTCAGATATGCGACGGAACATCGGTGTGGTGTTGTTGTT 600
Query 578 AAAGGGCCAAGACTTAGTGGGAATATATCTGGAACAGACCCGTTGAAGGATAATCGTTTG 637
|||||||||||||||||||||||||||||||| || || |||||||| ||||||||||||
Sbjct 601 AAAGGGCCAAGACTTAGTGGGAATATATCTGGCACTGATCCGTTGAAAGATAATCGTTTG 660
Query 638 CTTCTTGAAGCTAAACCTTTGGATGAATCAGAAGAAGCTAATCACACAGCTAAAGTCGTT 697
|||||||||||||||||||| ||||||||||||||||||| |||||| |||||||| |||
Sbjct 661 CTTCTTGAAGCTAAACCTTTAGATGAATCAGAAGAAGCTACTCACACTGCTAAAGTTGTT 720
Query 698 AACGAATTATCCAGGGAGATATCGCGCATTCTTGTTTCTCATCCGGTTAATGTAAAGAGA 757
||||||||||| || ||||||||||| |||||||||||||| |||||||| | | |||||
Sbjct 721 AACGAATTATCAAGAGAGATATCGCGTATTCTTGTTTCTCACCCGGTTAACGCAGAGAGA 780
Query 758 GCTGCACAAGGAAAGAATATTGCCAATCTTGTCCTTTTAAGAGGCTGTGGTATTCGAATC 817
||||||||||| ||||||||||| ||||| || |||||| | || |||||||||||||||
Sbjct 781 GCTGCACAAGGCAAGAATATTGCAAATCTCGTTCTTTTACGTGGTTGTGGTATTCGAATC 840
Query 818 GAGGTTCCTCCTTTTCATGAGAAGCACGGTTTGTGGCCGTGTATGGTAGCACCAACGAAG 877
||||| |||||||||||||||||||| || |||||||| ||||||||||||||||| |||
Sbjct 841 GAGGTACCTCCTTTTCATGAGAAGCATGGCTTGTGGCCATGTATGGTAGCACCAACAAAG 900
Query 878 ATTATAGCCGGACTTGGTATGTCCCTTGGTATTGACATTCTAGAAGCTCCGGGAGCCACT 937
|||||||| |||||||||||||| || |||||||||||| |||||||||||||||| |||
Sbjct 901 ATTATAGCTGGACTTGGTATGTCGCTCGGTATTGACATTTTAGAAGCTCCGGGAGCTACT 960
Query 938 GGAGATTACCGGACACTTCTCACATCAAAAGCAATTGCTATAGCCAATGCGCTTTCAGCT 997
|||||||||||||| ||||| ||||| ||||||| ||||||||| ||||| || ||||||
Sbjct 961 GGAGATTACCGGACGCTTCTGACATCGAAAGCAACTGCTATAGCTAATGCTCTCTCAGCT 1020
Query 998 CCTTTGAATCCCTGCCCAAATGTCTTTGAT-CCAGCAGAAGACGGGCATAAACCGGGAAG 1056
||||||||||||||||| |||||||||| | || | ||| |||||||||||||| |||||
Sbjct 1021 CCTTTGAATCCCTGCCCTAATGTCTTTG-TACCGGGAGAGGACGGGCATAAACCAGGAAG 1079
Query 1057 GTCAGATGGTTACGATTTTGGATTCCTTCACATAAAGGCTATAGATGATGCAGGTCATGA 1116
|||||||||||| ||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 1080 GTCAGATGGTTATGATTTCGGGTTCCTTCACATAAAGGCTATAGATGATGCAGGTCATGA 1139
Query 1117 CAAGGCAACATTGTTCAAAGTCCGAGGCTTGGAAGCTGTGGATAAGGCGATACGTCAGCT 1176
||||| ||| |||||||||| ||||| || |||||||| ||||||||||||||||||||
Sbjct 1140 TAAGGCGACAATGTTCAAAGTTCGAGGTTTAGAAGCTGTTGATAAGGCGATACGTCAGCT 1199
Query 1177 CGCTAAGCTTCTATGGCATGCCGAATCTTCTTCAAATTACCAGTATTTCTTGTGTGTGAC 1236
||||||||| ||||||| || || |||||| || |||||||||||||||||||||||||
Sbjct 1200 TGCTAAGCTTTTATGGCAAGCTGAGTCTTCTACACATTACCAGTATTTCTTGTGTGTGAC 1259
Query 1237 TGGTGATCATTCTACTCCAGTTGAGTATGGAGACCACAGCTTCGAGCCTGTCCCATTTAC 1296
||||||||||| ||||| ||||||||||||||||||||||| |||||||||||||| ||
Sbjct 1260 CGGTGATCATTCAACTCCTGTTGAGTATGGAGACCACAGCTTTGAGCCTGTCCCATTCAC 1319
Query 1297 AATGTGCCGGCTAAAGGACTTTGTGAGCGCGGTTGGAGGAGAATCAGCCTTATTAGAGAC 1356
|||||||||| ||| |||||||||||||||||| ||||||||||||||| || |||||||
Sbjct 1320 AATGTGCCGGTTAAGGGACTTTGTGAGCGCGGTGGGAGGAGAATCAGCCGTACTAGAGAC 1379
Query 1357 GTCGTTGGACCCTTTTCCACTTCCAACGAATGTC-A--C---TGAA-A-----C-AGA-A 1402
||| |||||||||||||||||||||||| ||| | | |||| | | | | |
Sbjct 1380 GTCTTTGGACCCTTTTCCACTTCCAACGGTTGTGGAATCAGGTGAAGATGTTACCAAACA 1439
Query 1403 -GAAGAAGACG-GTGGGAAGAAGGAAGCTCCT-TCGGCGATTAGTGGAGACTCAGTCT-C 1458
|| ||||| | |||||| || |||||||||| | ||| ||| ||||||| | ||| | |
Sbjct 1440 AGAGGAAGA-GAGTGGGAGGAGGGAAGCTCCTCT-GGCAATTGGTGGAGATTTAGT-TGC 1496
Query 1459 AGAATTGAATGAGATTGCATCTGCAAGAGGATGTCTTGGCCGTTTCCATGGTGGTGAAAT 1518
||| ||||||||| ||||| ||||||||||||||||||||||||||||||| ||||||||
Sbjct 1497 AGAGTTGAATGAGGTTGCAGCTGCAAGAGGATGTCTTGGCCGTTTCCATGGCGGTGAAAT 1556
Query 1519 GATGGGAGTCATCACCAAGTTTCTTAAGCTAGATGTATGA 1558
||||||||||||||| || |||||||| ||||| ||||||
Sbjct 1557 GATGGGAGTCATCACTAACTTTCTTAATCTAGAGGTATGA 1596
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78915256740
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5