BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg489807

Length=296
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G09530.1 | Symbols:  | SAUR-like auxin-responsive protein fa...   422    1e-117


> AT4G09530.1 | Symbols:  | SAUR-like auxin-responsive protein 
family  | chr4:6029413-6029724 REVERSE LENGTH=312
Length=312

 Score =  422 bits (228),  Expect = 1e-117
 Identities = 274/296 (93%), Gaps = 3/296 (1%)
 Strand=Plus/Plus

Query  1    ATGCCGAACAAGGTCATTGACATGCACTTCCACCAaagagaagaagaagaagaTTCTGGA  60
            |||||| |||||||||||||||||||||||||| |||||||||||||||||||| |||| 
Sbjct  1    ATGCCGCACAAGGTCATTGACATGCACTTCCACGAAAGAGAAGAAGAAGAAGATACTGGT  60

Query  61   GAGAGCAGATCATCATCCTCAAGAACACCCAGAGGGCATTTCGTGGTTTACGTCGGTACG  120
            ||||| ||   |||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct  61   GAGAGTAG---ATCATCCTCAAGAACACCGAGAGGGCATTTCGTCGTTTACGTCGGTACG  117

Query  121  AATAAGAAGTTGGAAAGATTCGTGATCCCCACAAAGTTTTTGAAGAGCCCTTCTTTCCAA  180
            || ||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||
Sbjct  118  AAGAAGAAGTTGGAAAGATTCGTGATCCCCACAACGTTTTTGAAGAGCCCTTCATTCCAA  177

Query  181  AAGCTTCTAGACAATGCGGCGGAAGAATTCGGTTACGCGGAGGCTTACCAGAACAAGATT  240
            |||||||||||||||||||| || ||||||||||||||||| ||| ||| | ||||||||
Sbjct  178  AAGCTTCTAGACAATGCGGCCGAGGAATTCGGTTACGCGGAAGCTCACCGGGACAAGATT  237

Query  241  GTCTTGCCCTGTGATGTCTCTAGTTTCCGAAGTCTTGTCATGTTCCTGACTTCTCA  296
            || ||||| ||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct  238  GTATTGCCTTGTGATGTCTCTACTTTCCGAAGTCTTGTCATGTTCCTGACTTCTCA  293



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 13672827728


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5