BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489810
Length=1252
Score E
Sequences producing significant alignments: (Bits) Value
AT4G09580.1 | Symbols: | SNARE associated Golgi protein family... 1731 0.0
> AT4G09580.1 | Symbols: | SNARE associated Golgi protein family
| chr4:6052352-6054397 REVERSE LENGTH=1317
Length=1317
Score = 1731 bits (937), Expect = 0.0
Identities = 1117/1199 (93%), Gaps = 31/1199 (3%)
Strand=Plus/Plus
Query 76 TGACGGCGGAGGAAGACAGCTCGTAAAAGACGAAGAAAGCGCCGCCGCGTCGTCGGCAGC 135
|||||| |||| ||||||||| |||||||||||||||||| |||| || || ||||||||
Sbjct 111 TGACGGTGGAGCAAGACAGCTAGTAAAAGACGAAGAAAGCCCCGCAGCTTCATCGGCAGC 170
Query 136 TAAAGGACTCTTAAACGATGATTCACCGACGGGTAAACGAACCAAATCGGAGAGATTTCC 195
||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 171 TAAAGGACTCTTAAACGATGACTCACCGACTGGTAAACGAACCAAATCGGAGAGATTTCC 230
Query 196 TCTCCCACGGTGGGAATTCGCCGTGTTTTTCACCGTCTTCCTTGTTTTCACCACCGGACT 255
|||| |||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 231 TCTCTCACGGTGGGAATTCGCCGTGTTTTTCACCGTCTTTCTCGTTTTCACCACCGGACT 290
Query 256 -TTTGTGTATTTACCTCACCATGCCTGCCGCTGAATACGGCAAGCTTAAAGTTCCTAGAA 314
||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 291 CTTT-TGTATTTACCTCACCATGCCTGCCGCTGAATACGGCAAGCTCAAAGTTCCTAGAA 349
Query 315 CTATCTCCGATCTTCGATTGCTTAAAGAGAATCTTGGGTCTTATGCAAGTGAGTACCAAG 374
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 350 CTATCTCCGATCTTCGATTGCTCAAAGAGAATCTTGGGTCTTATGCAAGTGAGTACCAAG 409
Query 375 CACGGTTCATTTTAGGTTACTGTTCGACGTATATCTTTATGCAGACCTTTATGATACCTG 434
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 410 CACGGTTCATTTTAGGTTACTGTTCGACGTATATCTTTATGCAGACATTTATGATACCTG 469
Query 435 GAACAATCTTTATGTCATTGCTTGCTGGAGCTCTTTTCGGTGTGGTTAGAGGTTTTGTCC 494
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 470 GAACGATCTTTATGTCATTGCTTGCTGGAGCTCTTTTCGGTGTGGTTAGAGGTTTTGTTC 529
Query 495 TTGTTGTTCTCAATGCAACAGCTGGAGCATGTTCTTGTTTCTTCTTATCGAAATTGGTCG 554
||||||| || |||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 530 TTGTTGTCCTTAATGCAACTGCTGGAGCATGTTCTTGCTTCTTCTTATCGAAATTGGTCG 589
Query 555 GAAGGCCTTTGGTTAACTGGTTATGGCCAGAAAAGTTGAGGTTTTTCCAGGCAGAGATTG 614
| ||||| |||||||||||||||||||| |||||||||||||||||||| || |||||||
Sbjct 590 GTAGGCCATTGGTTAACTGGTTATGGCCTGAAAAGTTGAGGTTTTTCCAAGCTGAGATTG 649
Query 615 CGAAAAGAAGAGATAGGCTGCTAAACTACATGTTGTTCTTAAGGATAACACCAACGCTTC 674
|||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||
Sbjct 650 CGAAAAGAAGAGATAGGCTGCTAAACTACATGCTGTTCTTAAGGATAACACCAACACTTC 709
Query 675 CAAACCTCTTTATCAATTTGTCTTCTCCAATCGTTGACATACCCTTTCACGTCTTCTTTT 734
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 710 CAAACCTCTTTATCAATTTGTCTTCTCCAATCGTTGACATACCCTTTCACGTCTTCTTTT 769
Query 735 TGGCGACTCTAGTCGGCCTTATGCCAGCTTCGTACATCACCGTTAGAGCTGGTTTGGCTC 794
|||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 770 TGGCGACTCTAGTCGGTCTTATGCCAGCTTCGTACATCACAGTTAGAGCTGGTTTGGCTC 829
Query 795 TTGGAGATCTCAGATCAGTAAAGGATCTGTATGATTTTAAGACTTTGTCCGTGCTATTCC 854
|||||||||||||||||||||||||| |||||||||| ||||| ||||| ||||| ||||
Sbjct 830 TTGGAGATCTCAGATCAGTAAAGGATTTGTATGATTTCAAGACCTTGTCAGTGCTGTTCC 889
Query 855 TCATTGGATCCATCTCCATATTCCCTGCCCTCCTAAAGAGAAAGAGAGTATATGAATGAA 914
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 890 TCATTGGATCCATCTCCATATTCCCTGCCCTTCTAAAGAGAAAGAGAGTATATGAATGAA 949
Query 915 GA--CG-----T-A----TA-A-TCATTTATATAGATATTGATGAGCAGCACCTTTCAGT 960
|| || | | || | |||||||||||||||||||||||||||||||||||||
Sbjct 950 GAGTCGAAGACTGAAGAGTATAATCATTTATATAGATATTGATGAGCAGCACCTTTCAGT 1009
Query 961 CGCATGGCGGGATTTTAAAGGTGTTTATGAGCTCAAGATAAA-GAAGAAGATTGTTTCTG 1019
|||||||| | |||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1010 CGCATGGCAGCATTTCAAAGGTGTTTATGAGCTCAAGATAAAAGAAGAAGATTGTTTCTG 1069
Query 1020 AAACATCACGGAGCTTAAAACCGCTAACTCTGGCTTTGATTGGTTTATTGTCGTCAATTC 1079
|||||| |||||||||||| |||||||||||||||||||| |||||||||| || |||
Sbjct 1070 CAACATCGCGGAGCTTAAAATCGCTAACTCTGGCTTTGATTTGTTTATTGTCTTCGATTT 1129
Query 1080 GAGAGCTTCTCTCATTCCCTTGTAGTA--A-GTGTTTGTCTAGCTAGTTTACTGAATCTT 1136
|||||||||||| | ||||||||||| | |||||||| ||||||||||||||||||
Sbjct 1130 GAGAGCTTCTCTTACCCCCTTGTAGTAGTAAGTGTTTGTGTAGCTAGTTTACTGAATC-- 1187
Query 1137 GATACACGATTGGCTTTGTATATTGAAT-CTTGATTCCGAGATCTGACTCTGCAGCCTAT 1195
|| ||||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 1188 -AT----GATTGGCTTTGTATATTGAATACTTGATTCAGAGATCTGACTCTGCAGCCTAT 1242
Query 1196 TGGCTTATGTA-A-CAAAACATGATTATGTAAATGCTTGAAGACATTGCTTTGACCAAA 1252
||||||||||| | |||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1243 TGGCTTATGTATAACAAA-CATGATTATGTAAATGCTTGAAGACATTGCTTTGACCAAA 1300
Score = 95.3 bits (51), Expect = 1e-18
Identities = 72/81 (89%), Gaps = 6/81 (7%)
Strand=Plus/Plus
Query 1 TGGGTTTTCTTGTGAAAGCATT------ACAGTAATGGCGGCTCCTCGGAATTTAACAGG 54
|||||||||||| ||||||||| ||||||||||||||||||||||||||||||||
Sbjct 51 TGGGTTTTCTTGAGAAAGCATTACAGACACAGTAATGGCGGCTCCTCGGAATTTAACAGG 110
Query 55 TGACGGCGGAGGAAGACAGCT 75
|||||| |||| |||||||||
Sbjct 111 TGACGGTGGAGCAAGACAGCT 131
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61545868170
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5