BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489814
Length=529
Score E
Sequences producing significant alignments: (Bits) Value
AT4G09600.1 | Symbols: GASA3 | GAST1 protein homolog 3 | chr4:6... 534 3e-151
AT4G09610.1 | Symbols: GASA2 | GAST1 protein homolog 2 | chr4:6... 383 1e-105
> AT4G09600.1 | Symbols: GASA3 | GAST1 protein homolog 3 | chr4:6072804-6073612
REVERSE LENGTH=606
Length=606
Score = 534 bits (289), Expect = 3e-151
Identities = 393/442 (89%), Gaps = 12/442 (3%)
Strand=Plus/Plus
Query 1 AGAAGTGTTAGATTTATATACTTAA----A--TACCAAA-ACAGAATTACAGAGAATAG- 52
||| ||||||||||||||||||||| | ||| ||| | ||||| | |||||||||
Sbjct 1 AGAGGTGTTAGATTTATATACTTAATTGTAGCTACTAAATAGAGAATCAGAGAGAATAGT 60
Query 53 TTTATACAC-TGCACGAAACTGCATACTTTTTCAGACATGGCAATCTTCCGAAGTAAACT 111
|||||| | ||||||||||||||| |||||| ||||||||||||||||||||||| |||
Sbjct 61 TTTATA-TCTTGCACGAAACTGCATGCTTTTTGAGACATGGCAATCTTCCGAAGTACACT 119
Query 112 -GttttttttGTTAATCCTGTTCTGTCTCACCACTTATGAGCTTCATGTTCATGCTGCTG 170
| |||| || | ||||| ||||| |||||||||| |||||||||||||||||||||||
Sbjct 120 AG-TTTTACTGCTGATCCTCTTCTGCCTCACCACTTTTGAGCTTCATGTTCATGCTGCTG 178
Query 171 AAGCTACACAGGTCGGTGAAGGCGTAGTGAAAATTGATTGTGGTGGGAGATGCAAAGGTA 230
||| | |||| ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 179 AAGATTCACAAGTCGGTGAAGGCGTAGTGAAAATTGATTGCGGTGGGAGATGCAAAGGTA 238
Query 231 GATGCAGCAAATCGTCGAGGCCAAATCTGTGTTTGAGAGCATGCAACAGCTGTTGTTACC 290
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 239 GATGCAGCAAATCGTCGAGGCCAAATCTGTGTTTGAGAGCATGCAACAGCTGTTGTTACC 298
Query 291 GCTGCAACTGTGTGCCACCTGGTACTGCCGGAAACCACCACCTTTGTCCTTGCTACGCCT 350
||||||||||||||||||| || || ||||| ||||||||||||||||||||||||||||
Sbjct 299 GCTGCAACTGTGTGCCACCAGGCACCGCCGGGAACCACCACCTTTGTCCTTGCTACGCCT 358
Query 351 CCATTACTACTCACGGTGGCCGCCTCAAGTGCCCTTAAATATATATATACAAAGATGTGT 410
||||||| |||| |||||||| |||||||||||||||| ||||| | | | ||||||||
Sbjct 359 CCATTACCACTCGTGGTGGCCGTCTCAAGTGCCCTTAAACATATACACATACAGATGTGT 418
Query 411 ATATGTGTCTCCCGCGAGGACA 432
||| ||||| ||||||| |||
Sbjct 419 GTATATGTCTTCCGCGAGCACA 440
> AT4G09610.1 | Symbols: GASA2 | GAST1 protein homolog 2 | chr4:6074770-6075645
REVERSE LENGTH=529
Length=529
Score = 383 bits (207), Expect = 1e-105
Identities = 302/347 (87%), Gaps = 10/347 (3%)
Strand=Plus/Plus
Query 48 AATAGTTTATAC-ACTGCAC-GAAACTGCATACTTTTTCAG-ACATGGCAATCTTCCGAA 104
|||| ||| ||| ||| ||| |||| ||||| |||| | |||||||| |||||||||
Sbjct 32 AATATTTTGTACAACT-CACAGAAATTGCAT-GAGTTTC-GAACATGGCAGTCTTCCGAA 88
Query 105 GTAAACTGttttttttGTTAATCCT-GTTCTGTCTCACCACTTATGAGCTTCATGTTCAT 163
||| |||| || | || ||||| | | ||||||||||||||||||||||||| || ||
Sbjct 89 GTACACTGGTTCTGTTACTAATCATCG-TCTGTCTCACCACTTATGAGCTTCACGTCCAC 147
Query 164 GCTGCTGAAGCTACACAGGTCGGTGAAGGCGTAGTGAAAATTGATTGTGGTGGGAGATGC 223
|||||||| | | || ||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 148 GCTGCTGATGGTGCAAAGGTCGGTGAAGGCGTAGTGAAAATCGATTGTGGTGGGAGATGC 207
Query 224 AAAGGTAGATGCAGCAAATCGTCGAGGCCAAATCTGTGTTTGAGAGCATGCAACAGCTGT 283
|||| ||||||||||||||| ||||| | || || || |||||||| ||||||||||||
Sbjct 208 AAAGATAGATGCAGCAAATCTTCGAGAACGAAGCTATGCTTGAGAGCGTGCAACAGCTGT 267
Query 284 TGTTACCGCTGCAACTGTGTGCCACCTGGTACTGCCGGAAACCA-CCACCTTTGTCCTTG 342
|||| |||||||||||||||||||||||||||| | ||||| || |||||||||||||||
Sbjct 268 TGTTCCCGCTGCAACTGTGTGCCACCTGGTACTTCTGGAAA-CACCCACCTTTGTCCTTG 326
Query 343 CTACGCCTCCATTACTACTCACGGTGGCCGCCTCAAGTGCCCTTAAA 389
||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 327 CTACGCCTCCATTACCACTCACGGTGGCCGCCTCAAGTGCCCTTAAA 373
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25318010088
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5