BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489818
Length=1195
Score E
Sequences producing significant alignments: (Bits) Value
AT4G09670.1 | Symbols: | Oxidoreductase family protein | chr4:... 1875 0.0
> AT4G09670.1 | Symbols: | Oxidoreductase family protein | chr4:6107150-6109122
REVERSE LENGTH=1394
Length=1394
Score = 1875 bits (1015), Expect = 0.0
Identities = 1138/1198 (95%), Gaps = 6/1198 (1%)
Strand=Plus/Plus
Query 1 AAAAATCCATACCCACAACAATGGCTACCGACACCCAAATCCGAATCGGAGTAATGGGTT 60
||||| ||||| ||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 54 AAAAACCCATAACCACAACAATGGCCACCGAAACCCAAATCCGAATCGGAGTAATGGGTT 113
Query 61 GCGCCGACATCGCTCGAAAAGTCTCTCGAGCCATCAACCTCGCTCCCAACGCCACAATCG 120
||||||| ||||||||||||||||||||||| ||| |||||||||||||||||||||||
Sbjct 114 GCGCCGATATCGCTCGAAAAGTCTCTCGAGCAATCCACCTCGCTCCCAACGCCACAATCT 173
Query 121 CCGCCGTAGCAAGCCGTTCTTTAGAAAAAGCCAAA-TCTTTCGCCACCGCCAATAACTAC 179
||| |||||||||||| |||||||||||||||||| |||| ||||||||||||||||||
Sbjct 174 CCGGCGTAGCAAGCCGGTCTTTAGAAAAAGCCAAAGCCTTT-GCCACCGCCAATAACTAC 232
Query 180 CCAGAATCAACCAAAATCCACGGCTCTTACGAATCAATCCTCGAAGATCCAGAGATCGAT 239
||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct 233 CCAGAATCAACCAAAATCCACGGCTCTTACGAATCTCTTCTCGAAGATCCAGAGATCGAT 292
Query 240 GCTCTCTATGTTCCTCTGCCCACTAGTCTTCACGTTGAGTGGGCTATTAAAGCAGCTGAG 299
|| |||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 293 GCGCTCTATGTTCCTCTCCCCACTAGTCTCCACGTTGAGTGGGCTATTAAAGCAGCTGAG 352
Query 300 AAAGGGAAACATATCCTTTTGGAGAAGCCTGTTGCTATGAATGTAACTGAGTTTGATAAG 359
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 353 AAAGGGAAACATATCCTTTTGGAGAAGCCTGTTGCTATGAACGTAACTGAGTTTGATAAG 412
Query 360 ATTGTTGTTGCTTGTGAAGCTAATGGTGTTCAGATTATGGATGGTACTATGTGGGTTCAT 419
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 413 ATTGTTGATGCTTGTGAAGCTAATGGTGTTCAGATTATGGATGGTACTATGTGGGTTCAT 472
Query 420 AATCCTAGAACTGCTTTGCTTAAAGAGTTT-TTGTCTGATTCTGAACGTTTTGGTCAGCT 478
|||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 473 AATCCTAGAACTGCTTTGCTTAAAGAGTTTCTT-TCTGATTCTGAACGTTTTGGTCAGCT 531
Query 479 TAAAACTGTACAGAGTTGTTTCTCATTTGCTGGAGATGAAGATTTTCTCAAAAACGATAT 538
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 532 TAAAACTGTACAGAGTTGTTTCTCATTTGCTGGAGATGAAGATTTTCTTAAAAACGATAT 591
Query 539 CCGTGTGAAACCGGGTCTTGATGGGCTTGGTGCGCTAGGAGATGCTGGGTGGTACGCGAT 598
|||||||||||| |||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 592 CCGTGTGAAACCTGGTCTTGACGGGCTTGGTGCGCTAGGAGATGCGGGGTGGTACGCGA- 650
Query 599 TC-GAGCAACTCTTTTAGCTAATAACTTTGAGCTTCCGAAAACTGTGACGGCTTTTCCCG 657
|| |||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 651 TCAGAGCAACTCTTTTAGCTAATAACTTTGAGCTTCCGAAAACTGTGACTGCTTTCCCCG 710
Query 658 GGGCTGTGTTAAACGAGGCTGGAGTGATTCTTTCCTGTGGAGCATCTTTGAGTTGGGAAG 717
| |||||||| || || || |||||||| |||||||||||||||||||||||||||||||
Sbjct 711 GTGCTGTGTTGAATGAAGCAGGAGTGATACTTTCCTGTGGAGCATCTTTGAGTTGGGAAG 770
Query 718 ATGGACGGACTGCAACTATATATTGTTCGTTTTTGGCGAACTTGACAATGGAGATAACTG 777
||||||| |||||||||||||||||||| || ||||| ||||| ||||||||||||||||
Sbjct 771 ATGGACGAACTGCAACTATATATTGTTCATTCTTGGCTAACTTAACAATGGAGATAACTG 830
Query 778 CCATTGGAACGAAAGGCACACTTCGTGTGCACGACTTTATTATCCCGTATAAGGAGACTG 837
|||||||||||||||||||||| ||||| |||||||| ||||||||||||||||||||||
Sbjct 831 CCATTGGAACGAAAGGCACACTCCGTGTACACGACTTCATTATCCCGTATAAGGAGACTG 890
Query 838 AGGCGTCGTTTACCACGAGCACTAAAGCTTGGTTCAATGACCTTGTGACTGCGTGGGTTA 897
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 891 AGGCGTCGTTTACCACGAGCACTAAAGCTTGGTTCAATGACCTTGTGACTGCGTGGGTTA 950
Query 898 GTCCCCCGAGTGAGCACACGGTTAAGACAGAGCTTCCGCAAGAGGCATGTATGGTGAGGG 957
|||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| |
Sbjct 951 GTCCCCCGAGTGAGCATACGGTTAAGACAGAGCTTCCACAAGAGGCATGTATGGTGAGAG 1010
Query 958 AATTTGCTCGATTGGTTGGAGAAATCAAGAACAATGGTGCAAAGCCTGATGGGTACTGGC 1017
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1011 AGTTTGCTCGATTGGTTGGAGAAATCAAGAACAATGGTGCAAAGCCTGATGGGTACTGGC 1070
Query 1018 CTAGTATTAGCCGAAAGACGCAACTGGTTGTTGATGCTGTTAAAGAGTCTGTTGATAAAA 1077
|||||||||||||||||||||| || || |||||||||||||||||||||||||||||||
Sbjct 1071 CTAGTATTAGCCGAAAGACGCAGCTAGTGGTTGATGCTGTTAAAGAGTCTGTTGATAAAA 1130
Query 1078 AGTATCAACAGATTAGTCTCTCTGGTCGTTGAAGGAAAGGACTCAAATTAGAAATGTTGT 1137
| ||||||||||||||||||||||||||||||||||||||||||| | || |||||||||
Sbjct 1131 ACTATCAACAGATTAGTCTCTCTGGTCGTTGAAGGAAAGGACTCAGACTATAAATGTTGT 1190
Query 1138 CATGAGTTCACTCCTCTCTCGCTCTCTATGTTCAAACTTCGATCATCCGTTTAAGTGT 1195
| || |||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1191 CGTGTGTTCTCTCCTCTCTCGCTCTCTATGTTCAAACTTCGATCAACCGTTTAAGTGT 1248
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58684437105
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5