BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489822
Length=3199
Score E
Sequences producing significant alignments: (Bits) Value
AT4G09680.1 | Symbols: CTC1, ATCTC1 | conserved telomere mainte... 2665 0.0
> AT4G09680.1 | Symbols: CTC1, ATCTC1 | conserved telomere maintenance
component 1 | chr4:6116762-6123304 FORWARD LENGTH=4169
Length=4169
Score = 2665 bits (1443), Expect = 0.0
Identities = 1702/1826 (93%), Gaps = 21/1826 (1%)
Strand=Plus/Plus
Query 1381 GGTCACCCAGGAATGCCTGACTGTACTAGTGCATTCATCGAGGCTTTAGTCCTTCCGTGG 1440
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 2071 GGTCACCCAGGAATGCCTGACTGTACTAGTGTATTCATCGAGGCTTTAGTCCTTCCGTGG 2130
Query 1441 GAACTCATTTGCACTGTGACTGAAGAAGACGCAGCAGCTGCTCCCTATTTTGAAGAACAT 1500
|| ||||||||||||||||| |||||||| | |||||||||||| ||||||||||||||
Sbjct 2131 GATCTCATTTGCACTGTGACCGAAGAAGA-G--GCAGCTGCTCCCAATTTTGAAGAACAT 2187
Query 1501 GATACTTCGCAAGAAATACGTCCACATAAGAGATGTAAAACTAATAATGAATTAGAAAGG 1560
|||||||| |||||||||||||||||||||||||||||||||||||||| || | ||
Sbjct 2188 GATACTTCCCAAGAAATACGTCCACATAAGAGATGTAAAACTAATAATGGGCTACAGAGT 2247
Query 1561 CAAAGAGC-AT-TATCTGTGCCGCATGAAATTTCTTGCCAGATGACCATCAGATGTGCTA 1618
| || ||| | |||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 2248 C-AA-AGCTTTCTATCTGTGCCACATGAAATTTCTTGCCAGATGACCATCAGATGTGCTA 2305
Query 1619 GTAGTCACTGTTTGGTCACAGCAGCAACTCTTTCAAATTTGAGGGAGAACAAAAGTGGTA 1678
|||||||||| ||||| || ||||||||||||| ||||||| |||||||||||||||||
Sbjct 2306 GTAGTCACTGCTTGGTTGCAACAGCAACTCTTTCTAATTTGACGGAGAACAAAAGTGGTA 2365
Query 1679 ACATGCACATTACGAAGCGTGTGCTCTTAGAATTCATACCTGAGTGCCGTAACTATTATG 1738
| ||||| | | | | ||||||||| ||||||||||||||||| ||| ||||||||||||
Sbjct 2366 AAATGCATAGTGCTATGCGTGTGCTGTTAGAATTCATACCTGAATGCAGTAACTATTATG 2425
Query 1739 CTTTACAGATTGGCGGTTGCTATTTGATGAAACATGACACTGATGATTCTTTTTGTGTTG 1798
||||||||||||||||||||||||||||| |||| | |||||||||| ||||||||||
Sbjct 2426 GGTTACAGATTGGCGGTTGCTATTTGATGAAGCATGGCTCTGATGATTCCTTTTGTGTTG 2485
Query 1799 GACGGTCTGGCATATCTAACAATGACAAAATTGGTTTTAGACCTGAAACACGTATATGGA 1858
||||||||||||||||||||||||| ||||| ||||||||| ||||||||| ||||||
Sbjct 2486 GACGGTCTGGCATATCTAACAATGATAAAATCAATTTTAGACCAGAAACACGTTTATGGA 2545
Query 1859 GTGTGGAATTTTCTTTTGATGAAGTTCTCACCCATGATGGATCTATGGATGTATATCCTC 1918
|| ||||||||||||| || ||||||||||||||||||||||||||||||||| ||||||
Sbjct 2546 GTCTGGAATTTTCTTTCGACGAAGTTCTCACCCATGATGGATCTATGGATGTACATCCTC 2605
Query 1919 TGGTGTCTTCTCAACCATCTCTTGCGGTGGAACAAG-AAAATGTTTTTAGTCCACAACCT 1977
|||||||||||||||||||| |||||||||||| || ||||||||| ||||| |||||||
Sbjct 2606 TGGTGTCTTCTCAACCATCTTTTGCGGTGGAAC-AGCAAAATGTTTCTAGTCGACAACCT 2664
Query 1978 TGTTCAGATGTTTCACTTCTTCTCCCTTATGATGCAAAAGGACTCTTTTCGGTATTTCTC 2037
|||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 2665 TGTTCAGATGTTTCGCTTCTTCTCCCTTATGATGCAAAAGGACTCTTTTCAGTATTTCTC 2724
Query 2038 AAAGACGTGGAAGAAG-TTAATAAGCCATTGGCAGCTGGGAAGGACAATAATAATAT-TG 2095
|| ||| |||||| | |||||||||||||||||||||||||||||||||||||||| |
Sbjct 2725 AACGACTTGGAAG-GGCTTAATAAGCCATTGGCAGCTGGGAAGGACAATAATAATATAT- 2782
Query 2096 CATGCTGTACTCAGTCGGAGA-AGATAATGCATGCAGAGCCGTCTCGAGTACCTCCTTCC 2154
||||||||||||||||||||| | |||||||||||||||||||||||| ||| |||||||
Sbjct 2783 CATGCTGTACTCAGTCGGAGACA-ATAATGCATGCAGAGCCGTCTCGACTACTTCCTTCC 2841
Query 2155 AACAGCTTGTTTCCTGAAGGAAATCTAGCGACTTTCAGAGGCGACGTAGTAGCAGTTGAC 2214
|||||||||||||||||||||||||| || ||||||||||| ||||||||||||||||||
Sbjct 2842 AACAGCTTGTTTCCTGAAGGAAATCTTGCTACTTTCAGAGGTGACGTAGTAGCAGTTGAC 2901
Query 2215 GCTGTTACCTCTTCTGTCAATGATGTTTCAAGCAGCTATTGCATTAATGTTCTAGTCAAT 2274
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 2902 GCTGTTACCTCTTCTGTCGTTGATGTTTCAAGCAGCTATTGCATTAATGTTCTAGTCAAT 2961
Query 2275 CATCAAATTTTGAAGATATTTGGTCCACTTAGAAGGCATTCATATCTCACTGGATTCGGC 2334
|||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 2962 CATCAAATGGTGAAGATATTTGGTCCACTTAGAAGGCATTCATATCTCACTGGATTTGGC 3021
Query 2335 CCTGGGGCGAGTGCAACATTCTACCGGATTCTTGGAACAGGAGAGGAAAACAGGTTTGTG 2394
|||| ||| ||||||||||||||||||||||||||| |||||| ||||||| ||||||
Sbjct 3022 TTTGGGACGAATGCAACATTCTACCGGATTCTTGGAACGGGAGAGCAAAACAGCTTTGTG 3081
Query 2395 TTGACATCAGCATCGTTTGTCAAGATAAACTCACGAAAGGCATTGGATAGTCCGCAGTTA 2454
|||||||||||||||||| |||| |||||||| |||||||||||||||||||||| ||||
Sbjct 3082 TTGACATCAGCATCGTTTATCAAAATAAACTCTCGAAAGGCATTGGATAGTCCGCCGTTA 3141
Query 2455 GAGAAACCGACTCACCGAGCTGCTATGTGTCTGCCCAAAATTACACATCAGGAATACGTA 2514
||||||||||||||| |||||||| ||||||||||||||||||||| |||||||| ||||
Sbjct 3142 GAGAAACCGACTCACGGAGCTGCTTTGTGTCTGCCCAAAATTACACCTCAGGAATTCGTA 3201
Query 2515 CCTTGCATTCTTGCTGGTCCTGCTTGTAATTCACTCTCAGGAAACAAGGATAATCAGCAA 2574
|||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 3202 CCTTGCATTCTTGCTGGTCCTGCTTGTAATTCGTTCTCAGGAAACGAGGATAATCAGCAA 3261
Query 2575 ATAAAGTCTGCCT----GC-A-AGGTTCTTTCAGTTTATCTTCTGGTTCTCCAAACGAGA 2628
||||||| ||||| || | |||||||||||||||||||||||||||||||||| |||
Sbjct 3262 ATAAAGTTTGCCTGCAAGCAACAGGTTCTTTCAGTTTATCTTCTGGTTCTCCAAACTAGA 3321
Query 2629 TCTGATGATCTGTCAGAAAACGAATGTAGGAACAATATTGATATACCACTTGCAGGATTT 2688
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3322 TCTGATGATCCCTCAGAAAACGAATGTAGGAACAATATTGATATACCACTTGCAGGATTT 3381
Query 2689 GTGGTAGATGACGGATCATCAATTTATCTTTGCTGGACGAGTGGGGAAAGAGCGTATACA 2748
|||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 3382 GTGGTAGATGACGGATCATCAACTTATCTTTGCTGGACGAGTGGGGAAAGAGCGTTTACA 3441
Query 2749 ATTCTTAGGCTGCACGAAGAGTTGCCTGAAGAAGCCATTGATGTGGCAAAGTGGATTAGA 2808
||||||||||||||||||||||| ||||||||| |||||||||||| | |||||| ||||
Sbjct 3442 ATTCTTAGGCTGCACGAAGAGTTACCTGAAGAAACCATTGATGTGGTACAGTGGACTAGA 3501
Query 2809 AGAGACAGCAGCCGGGGCACCACAGCTTACCATCTTGAACAAATTGTTCGGGTTCACAAG 2868
||| |||||| | ||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 3502 AGATACAGCAACTGGGGCACCACAGCTTACCATCTTGACCAAATTGTTCGGGTTCACAAG 3561
Query 2869 AGAATAGTTATGAAGTGCAATGGATCACAGATTGACGCACTCTTTCAAGACATCACCATT 2928
|||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 3562 AGAATAGTGATGAAGTGCAATGGATCACAGATTGACGTACTCTTTCAAGACATCACCATT 3621
Query 2929 GCTGTTACTTCAGATCAACTTCTCACCAAGTCAGAGGATAAGTTCCTCAAGTGGTTGATC 2988
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 3622 GCTGTTACTTCAGATCAACTTCTCACCAAATCAGAGGATAAGTTCCTCAAGTGGTTGATC 3681
Query 2989 CTAAATTCCATTGGCGGCCCCATATGGGAAGTTGCCACGAGCTCAATGGACATGAAAATG 3048
|||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 3682 CTAAATGCCATTAGCGGCCCCATATGGGAAGTTGCCGCGAGCTCAATGGACATGAAAATG 3741
Query 3049 ATTGAGCATTTGGAGAGGGAACAGTGTGTGGAGATGGAGACATCAAGACATAATCTGCAG 3108
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 3742 ATTGAGCATTTGGAGAGGGAACAGTGTGTGGAGATGGAGACATCAAGATATAATCTGCAG 3801
Query 3109 AGCGTTTGGGGTAATGAAGTATGCCAAGTGGATCCGTTGGTCCGAGCTTGGAGCTTACTC 3168
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3802 AGTGTTTGGGGTAATGAAGTATGCCAAGTGGATCCGTTGGTCCGAGCTTGGAGCTTACTC 3861
Query 3169 CAAGGTTTGCTAAATAGCTGATCATG 3194
||||||||||||||||||||||||||
Sbjct 3862 CAAGGTTTGCTAAATAGCTGATCATG 3887
Score = 1247 bits (675), Expect = 0.0
Identities = 922/1037 (89%), Gaps = 34/1037 (3%)
Strand=Plus/Plus
Query 1 ATGGAGAACGCCACAATTCTCACGATTGCGGAACTTGTCCACAAAGGCCGAGCCGTCACC 60
||||||||| |||||||||||||| || ||| |||||| || |||| ||||||||||
Sbjct 58 ATGGAGAACACCACAATTCTCACGGTTAAGGACCTTGTCAACGAAGGAATAGCCGTCACC 117
Query 61 GGTTCATCGTCGCTATTCTTC-TCCGCTGC-T-ACAC-CGAC-TCC---TC-ACTC-GT- 109
||| |||||||||||||| || |||||||| | ||| || | ||| || || | ||
Sbjct 118 GGTGCATCGTCGCTATTC-TCTTCCGCTGCTTCTCACTCGTCTTCCGAATCAAC-CAGTA 175
Query 110 C--TTCC-GAATCACATCCCGGTGCCGTCGATTCAGACTTTAGCCGTAAGTTTCTCGCAC 166
| || ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 176 CGAACCCTAAATCACATCCCGGTGCCGTCGATTCAGACTTTAGCCGTAAGTTTCTCACAC 235
Query 167 CGTTGAATC-ACCCAGCGGTTATCGTCGGGACGCTAGCTCTTCCTTCCGAAACCCTAAAA 225
||||||| | ||||| |||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 236 CGTTGAA-CTACCCAACGGTTATCTTCGGGACGGTAGCTCTTCCTTCCGAAACCCTAAAA 294
Query 226 TGTCCGAATCGCTACTGCTTTCGATTCTCAGACGGTGATTTGACAATCTGCTGTGATATC 285
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 295 TGTCCGAATCGCTACTGCTTTCGATTCACAGACGGTGATTTGACAATCTGCTGTGATATC 354
Query 286 CTTAGATTCGAAATT-CGCGCGATTGGGAGTACGATTTGTGTTCTCTCCTGGAATTTTCT 344
||| |||||| |||| |||||||||||||||| |||||||||||| || |||||||||||
Sbjct 355 CTTGGATTCG-AATTCCGCGCGATTGGGAGTAAGATTTGTGTTCTATCTTGGAATTTTCT 413
Query 345 TCCTATGAAGCATTGTTGTGGATTTTTGGAGATTATTAAGTGGAAATTTGTGGATACTGA 404
||||||||| |||| | |||||||||||||||| || || |||||||||||||||| ||
Sbjct 414 TCCTATGAATCATTCTGGTGGATTTTTGGAGATAATCAACTGGAAATTTGTGGATAGTGG 473
Query 405 TAATTTGGT-T-TC-----TC-GG---T-GTTCGTTTCCATTGATTCCTTCTTTGTATTC 452
|| |||| | | || || || | |||||||||||||||||||||||||||||||
Sbjct 474 TAGTTTGCTATCTCGGTGTTCTGGAATTAGTTCGTTTCCATTGATTCCTTCTTTGTATTC 533
Query 453 ACCGCAAAACGTTGACCGTAAGTCGCGATATAGCGTCTGTGGTGTGTTAGAGTCTATCAG 512
| ||||||||| |||||| ||||| || || ||||| |||||||||||||||||||||||
Sbjct 534 ATCGCAAAACGGTGACCGGAAGTCACGGTACAGCGTTTGTGGTGTGTTAGAGTCTATCAG 593
Query 513 CCCTGTGTCTGTTGTTCCTTGTCA-GGATGGGGTTTCAAGTGATTCTGTAAATCTTCCTG 571
|||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct 594 CCCTGTGTCTGTTGTTCCTTGT-ATGGATGGGGTTTCAAGTGATTCTGTAAATCTTCCTG 652
Query 572 GGTTCTTAGTGCATGTCATGGCTTGTGAGTGTAAAGAGTATAACCGGGATGCGATTGATT 631
|||||||||| ||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 653 GGTTCTTAGTACATGTCATGGCTTGTGAGTGTAAAGTGTATAGCCGGGATGCGATTGATT 712
Query 632 GCGGTCATGCTTTTGAGAAGTCTGTTTTTGTTTACTTATGTGGTTCAGTGGCTGCGAGTT 691
||||||| |||||||||| |||||| ||||||||||| ||||||| || |||||||||||
Sbjct 713 GCGGTCACGCTTTTGAGAGGTCTGTATTTGTTTACTTCTGTGGTTTAGAGGCTGCGAGTT 772
Query 692 GGCACCCTGCGATAACGAAGCTAGTTGGGAGTAATGTTGCTTTTTCTGGGTTGAAAAGGA 751
|||| |||| | | | |||| ||||||| || ||||||||| |||| |||||||||||||
Sbjct 773 GGCATCCTGTGGTGATGAAGTTAGTTGGAAGAAATGTTGCTCTTTCCGGGTTGAAAAGGA 832
Query 752 AGTTGGTTTATGTAAGAGGTGATTCTCTGTTGGTGTTTGTGACGACTGAGAATTCTGTTC 811
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 833 AGTTGGTTTATGTAAGAGGTGATTCTCTGTTGGTGTTTGTGACTACTGAGAATTCTGTTC 892
Query 812 TTCATCCACCTTGGTTATCGAAGAAACAGACAGTTTTGAAAGCTGGTGTTGATAGGAGAG 871
||||||||||||||||||| |||||| |||||||| |||| ||| ||||||||||||||
Sbjct 893 TTCATCCACCTTGGTTATCTAAGAAAGGGACAGTTTCGAAAACTGTTGTTGATAGGAGAG 952
Query 872 GTAACTACGGTTCCTACCTTGGATTTGTCAGAGGTTTGTACATGAGAGGAAAGCTTGTTG 931
|||||| |||||||||| ||||| ||| ||||||||||| ||| ||||||||||||||
Sbjct 953 GTAACTGTGGTTCCTACCGTGGATATGTTAGAGGTTTGTATTTGAAAGGAAAGCTTGTTG 1012
Query 932 AAATGGATGAAGATGTCTGGCTTTTATTGACGGATCAGATACACAACAGATCACACAGTA 991
| |||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||
Sbjct 1013 AGATGGATGAAGATGTCTGGCTTTTATTGACGGATCAGATACTCAATAGATCACACAGTA 1072
Query 992 TCCGAACTGGTTCTCTT 1008
|||| |||||||| |||
Sbjct 1073 TCCGTACTGGTTCCCTT 1089
Score = 590 bits (319), Expect = 3e-167
Identities = 356/374 (95%), Gaps = 2/374 (1%)
Strand=Plus/Plus
Query 1009 GGTGGGATCTTTACTGAATTCTGCATGCATGAGTCATGCGGATGCAATAGTGAAGCTCGT 1068
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1423 GGTGGGATCTTTACTGAATTCTGCATGCATGAGTCATGCGGATGCAATAGTGAAGCTCGT 1482
Query 1069 GATTGCAACCTAAAACTGGTAATGCCTATCTCAAGTTTTGTTCACCACTTCAAGGTCATG 1128
|||||||||||||||||||||||||| |||||||||||||| |||||| ||||||| |||
Sbjct 1483 GATTGCAACCTAAAACTGGTAATGCCCATCTCAAGTTTTGTCCACCACGTCAAGGTTATG 1542
Query 1129 CTGAATGAATTGCTTTCTCAGATTAAGAAAGACTTTAGTGCTAGTGATTGCTTAAGTGAT 1188
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1543 CTGAATGAATTGCTTTCTCAGATTAAGAAAGACTTTAGTGCTAGTGATTGCTTAAGTCAT 1602
Query 1189 TCACCGTCAACATGGAAAAGGTACAATCATACAAACACGAAGACTTTTAGAAGTGAGGAT 1248
||| |||||||||||||||| |||||| |||||||| |||||||| ||||||||||||||
Sbjct 1603 TCATCGTCAACATGGAAAAGATACAATAATACAAACCCGAAGACTCTTAGAAGTGAGGAT 1662
Query 1249 ACTAGTGTCATCTTACTTGGAAGATTGAAGATCTCATCTTCTGGAAGACTACAATTGTAT 1308
||| |||||||||| |||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1663 ACTGGTGTCATCTTGCTTGGAAGATTGAAGATCTCATCTTCTGGAAGACTACAATTGCAT 1722
Query 1309 GACAGAGCTAGCAGTATTGATATTCTTG-CTCCAGACCTTCTAAGTGATATAAATGCGAG 1367
|||||| |||||||||||||| |||| | ||||||||||||||||||||| |||||||||
Sbjct 1723 GACAGAACTAGCAGTATTGATGTTCT-GACTCCAGACCTTCTAAGTGATAGAAATGCGAG 1781
Query 1368 CAGGATATGTGAGG 1381
||||||||||||||
Sbjct 1782 CAGGATATGTGAGG 1795
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 159129543196
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5