BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489823
Length=979
Score E
Sequences producing significant alignments: (Bits) Value
AT4G09720.3 | Symbols: ATRABG3A, RABG3A | RAB GTPase homolog G3... 765 0.0
AT1G52280.1 | Symbols: AtRABG3d, RABG3d | RAB GTPase homolog G3... 274 1e-72
AT5G39620.1 | Symbols: AtRABG1, RABG1 | RAB GTPase homolog G1 |... 56.5 5e-07
> AT4G09720.3 | Symbols: ATRABG3A, RABG3A | RAB GTPase homolog
G3A | chr4:6132917-6135183 FORWARD LENGTH=1062
Length=1062
Score = 765 bits (414), Expect = 0.0
Identities = 461/484 (95%), Gaps = 1/484 (0%)
Strand=Plus/Plus
Query 497 GCAAGTCCATCAGATCCAAAGACATTTCCGTTTATAGTGCTTGGAAACAAGGTTGACGTA 556
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 545 GCAAGTCCATCAGATCCAAAGACATTTCCGTTTATAGTGCTTGGAAACAAGATTGACGTA 604
Query 557 GATGGAGGGAGCAGTAGAGTGGTCTCTGAGAAGAAAGCAGCTGACTGGTGTGCTTCAAAT 616
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 605 GATGGAGGGAGCAGTAGAGTGGTCTCTGATAAGAAAGCAGCTGACTGGTGTGCTTCAAAT 664
Query 617 GGTAATATTCCCTATTTTGAGACCTCAGCAAAAGAAGACTTCAATGTTGATGAGGCATTC 676
||||| || |||||||| ||||| ||||||||||| ||||||||||| ||||||||||||
Sbjct 665 GGTAACATACCCTATTTCGAGACATCAGCAAAAGATGACTTCAATGTCGATGAGGCATTC 724
Query 677 TTAACCATTGCCAAAACCGCCCTTGCAAACGAACATGAACAGGATATATACTTCCAAGGC 736
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 725 TTAACCATTGCCAAAACCGCCCTTGCTAACGAACATGAACAGGATATATACTTCCAAGGC 784
Query 737 ATACCCGATGGAGTGACTGAGAACGAGCCAAAAGGCGGTGGTTGCGCTTGCTGAACCGCA 796
||||| |||| ||||||||| |||||||||||||||||||||||||||||||||||| ||
Sbjct 785 ATACCAGATGCAGTGACTGAAAACGAGCCAAAAGGCGGTGGTTGCGCTTGCTGAACCACA 844
Query 797 GATTTGAGGATTCATTTACATTTGtttttttGATGAATTCA-TTGAAGGTTGGTGTACTC 855
|||||||||||||| | ||||| |||||||||||| ||||| ||||||||||||||||||
Sbjct 845 GATTTGAGGATTCAATGACATTCGTTTTTTTGATGCATTCATTTGAAGGTTGGTGTACTC 904
Query 856 TTGAGTTGCAGAACGATAAGCTTGTAGAAGCAATTTTTCGCCATTCCATCATATATTAAT 915
|||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct 905 TTGAGTTGCAGAACGATAAGCTTGTAGAAGCAATTTTTTGTCATTCCATCATATATTAAT 964
Query 916 TGATTGGAGAAGTCTCTGTATGATCAATCGATTCTGCTGGATAAAAATTTTATTTTTGGA 975
||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 965 TGATTGGAGAAGTCTGTGTATGATCAATCGATTCTGCTGGATACAAATTTTATTTTTGTA 1024
Query 976 AGAA 979
||||
Sbjct 1025 AGAA 1028
Score = 708 bits (383), Expect = 0.0
Identities = 470/508 (93%), Gaps = 21/508 (4%)
Strand=Plus/Plus
Query 1 TCTCTCTAATTGGCGCTCCTTTACTAATAT-CCCTTT--TT---TCCATCTTCGGATTCT 54
|||||||||||||||||||||||||||| | |||||| || ||||||||||||||||
Sbjct 19 TCTCTCTAATTGGCGCTCCTTTACTAAT-TGCCCTTTAATTCCATCCATCTTCGGATTCT 77
Query 55 TTTCAAATC-A-ATAAGAAGTACAAATCGGAGATCCCTACAAAATCCTCACCACTGTTCA 112
||||||||| | | || ||||||||||| | ||||||||||| |||||| ||||| ||||
Sbjct 78 TTTCAAATCAACAAAAAAAGTACAAATC-G-GATCCCTACAATATCCTCTCCACTCTTCA 135
Query 113 CAATTCCTTCTCCGAGATCTACACATTCTTTAACTCTCTTTCATTCTTCCGA-TATCAAT 171
||| |||||||||||||||| ||| ||| || |||||||||||||| || ||||
Sbjct 136 CAAATCCTTCTCCGAGATCT--ACA------AACGCTGTTTCATTCTTCCGATTA-CAAT 186
Query 172 GGCGACGAGAAGACGTACTTTGCTCAAGGTCATTGTCCTCGGTGACAGTGGGGTTGGTAA 231
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 187 GGCGACGAGAAGACGTACTTTGCTCAAGGTCATTGTCCTCGGTGACAGTGGGGTTGGAAA 246
Query 232 AACCTCCTTGATGAATCAATATGTGCATAAGAAGTTTAGTATGCAGTATAAAGCAACGAT 291
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 247 AACCTCCTTGATGAATCAATATGTGCATAAGAAGTTTAGTATGCAGTATAAAGCAACGAT 306
Query 292 TGGTGCTGATTTTGTAACCAAGGAGCTTCAGATTGGGGAAAAGCTTGTTACTCTCCAGAT 351
|||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 307 TGGTGCTGATTTTGTAACCAAGGAGCTTCAGATTGGGGAAAAGCTTGTTACTTTACAGAT 366
Query 352 TTGGGATACTGCTGGACAAGAAAGATTTCAGAGTCTTGGTGCTGCTTTTTACAGAGGAGC 411
||||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||
Sbjct 367 TTGGGATACTGCTGGACAAGAGAGATTCCAGAGTCTTGGTGCTGCTTTTTATAGAGGAGC 426
Query 412 TGATTGTTGTGCTTTGGTTTATGATGTTAATGTGTTGAGGTCTTTTGACAATCTCGAAAC 471
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 427 TGATTGTTGTGCTTTGGTTTATGATGTTAATGTGTTGAGGTCTTTTGATAATCTCGAAAC 486
Query 472 TTGGCACGAAGAGTTTCTTAAACAGGCA 499
|||||| || ||||||||||||||||||
Sbjct 487 TTGGCATGAGGAGTTTCTTAAACAGGCA 514
> AT1G52280.1 | Symbols: AtRABG3d, RABG3d | RAB GTPase homolog
G3D | chr1:19467969-19469586 REVERSE LENGTH=939
Length=939
Score = 274 bits (148), Expect = 1e-72
Identities = 400/517 (77%), Gaps = 36/517 (7%)
Strand=Plus/Plus
Query 194 CTCAAGGTCATTGTCCTCGGTGACAGTGGGGTTGGTAAAACCTCCTTGATGAATCAATAT 253
|||||||| || | |||||||| || || ||||| || || || ||||||||||| | |
Sbjct 162 CTCAAGGTTATCATTCTCGGTGATAGCGGTGTTGGGAAGACTTCGTTGATGAATCAGTTT 221
Query 254 GTGCATAAG-AAGTTTAGT-ATGCAGTATAAAGCAACGATTGGTGCTGATTTTGTAACCA 311
||| || | ||||||||| || ||||||||||| |||||||| || |||||| | || |
Sbjct 222 GTGAAT-CGAAAGTTTAGTAAT-CAGTATAAAGCTACGATTGGAGCAGATTTTTTGACTA 279
Query 312 AGGAGCTTCAGATTGGGGAAAAGCTTGTT-ACTCTCCAGATTTGGGATACTGCTGGACAA 370
| ||| |||| || | | | || | || ||| | ||||||||||||||||||||||||
Sbjct 280 AAGAGGTTCAAATAGATG-ACAGAATCTTCACTTTACAGATTTGGGATACTGCTGGACAA 338
Query 371 GAAAGATTTCAGAGTCTTGGT-GCTGCTTTTTACAGAGGAGCTGATTGTTGTGCT-TTGG 428
||||||||||| ||| |||| | ||| |||||| ||||||| |||||||||| | |||
Sbjct 339 GAAAGATTTCAAAGT-TTGGGAGTTGCGTTTTACCGAGGAGCGGATTGTTGTGTTCTTG- 396
Query 429 TTTATGATGTTAATGTGT-TGAGGTCTTTTGACAATCTCGA-AACTTGGCACG-AAGAGT 485
| |||||||| ||||| | ||| |||||||| ||||| | |||| || | | ||||||
Sbjct 397 TCTATGATGTCAATGT-TATGAAATCTTTTGATAATCTTAATAACT-GG-AGGGAAGAGT 453
Query 486 TTCTTAAA-CAGGCAAGTCCATCAGATCC--AAAGACATTTCCGTTTATAGTGCTTGGA- 541
| ||| | ||||| ||||| |||||||| ||| || ||||| ||| | ||| ||||
Sbjct 454 T-CTTGATTCAGGCTAGTCCTTCAGATCCTGAAA-AC-TTTCCATTTGTTGTG-TTGGGG 509
Query 542 AACAAGGTTGACGTAGATGGAGGGA-GCAGTAGAGTGGTCTCTGAGAAGAAAG-CAGCTG 599
|||||| ||| || ||||| || | | || |||||||| |||||||| |||| || |
Sbjct 510 AACAAGACTGATGTTGATGGTGGAAAG-AGCAGAGTGGTTTCTGAGAA-AAAGGCAAAGG 567
Query 600 -ACTGGTGTGCTTC-AAATGGTAATATTCCCTATTTTGAGACCTCAGCAAAAGAAG-ACT 656
| |||||||| || ||| || || ||||| || |||||||| || || ||||||| | |
Sbjct 568 CA-TGGTGTGCATCTAAA-GGAAACATTCCTTACTTTGAGACTTCCGCCAAAGAAGGA-T 624
Query 657 TCAATGTTGATGAGGCATTCTTAAC-CATTGCCAAAA 692
||||||| |||| ||| ||| || |||| ||||||
Sbjct 625 TCAATGTAGATGCGGCTTTCG-AATGCATTACCAAAA 660
> AT5G39620.1 | Symbols: AtRABG1, RABG1 | RAB GTPase homolog G1
| chr5:15864166-15865782 REVERSE LENGTH=615
Length=615
Score = 56.5 bits (30), Expect = 5e-07
Identities = 30/30 (100%), Gaps = 0/30 (0%)
Strand=Plus/Plus
Query 350 ATTTGGGATACTGCTGGACAAGAAAGATTT 379
||||||||||||||||||||||||||||||
Sbjct 172 ATTTGGGATACTGCTGGACAAGAAAGATTT 201
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47923376238
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5