BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489831
Length=1058
Score E
Sequences producing significant alignments: (Bits) Value
AT4G09770.1 | Symbols: | TRAF-like family protein | chr4:61543... 1334 0.0
AT4G09780.1 | Symbols: | TRAF-like family protein | chr4:61595... 920 0.0
> AT4G09770.1 | Symbols: | TRAF-like family protein | chr4:6154374-6155905
REVERSE LENGTH=1100
Length=1100
Score = 1334 bits (722), Expect = 0.0
Identities = 872/943 (92%), Gaps = 16/943 (2%)
Strand=Plus/Plus
Query 122 ATGAGAGATTGATATTTTACCCGGCTGGAAAGGTAGAAGAAGGTGGAAAAGACCATGTTT 181
||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 166 ATG-GAGATTGATATTTTACCCGGCTGGAAAGTTAGAAGAAGGTGGAAAAGACCATGTTT 224
Query 182 CGATTTATGCGAGGATCGACAATGTTGGTGCTTCTGAGATGCAGATTGATG-TAGAACTC 240
||||||||||||||||||| ||||||||||||||| ||||||||||||| | ||||||
Sbjct 225 CGATTTATGCGAGGATCGAAAATGTTGGTGCTTCT---ATGCAGATTGATGCT-GAACTC 280
Query 241 AAGTTCTTCATCTACAATCACAACATCAAGAAATACTCTGT-TTTCCAAGATGGAACTAT 299
||||||||||||||||||||||||| |||| |||||||||| ||| ||||||||||||||
Sbjct 281 AAGTTCTTCATCTACAATCACAACAACAAGCAATACTCTGTCTTT-CAAGATGGAACTAT 339
Query 300 GAAGCATTATAGTAAGGAGAAAAAAGAGTGGGGATTAGCACAAATGCTTCTTCTTTCGAA 359
||||||||| | |||||||||||||||||| ||||| || |||||||||||| |||||||
Sbjct 340 GAAGCATTACAATAAGGAGAAAAAAGAGTGTGGATTTGCGCAAATGCTTCTTTTTTCGAA 399
Query 360 GTTTAACGACCCAAAAAATGGGTACATCGATGGAAATGCTTGTATCGTTGGGGTGGAGAT 419
||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 400 GTTCAACGACCCAAAGAATGGGTACATCGATGGAAATGCTTGTATCGTTGGGGTGGAGAT 459
Query 420 ATTCGTTATAAAGCCGAGAGAGAGGGTGGAGAGGGTTGCATTCACACAAAACCCACCAAA 479
||||||||||||||||| ||||| |||||||||||||| ||||||||||||||||||| |
Sbjct 460 ATTCGTTATAAAGCCGATAGAGAAGGTGGAGAGGGTTGTATTCACACAAAACCCACCAGA 519
Query 480 AAACAAATTCACCTGGAAAATCTCTCATTTCTCAGAAATAGGAGACAAGAGATATTATTA 539
|||||||||||| ||||||||||||||||||||| | ||||||||||||||||| |||||
Sbjct 520 AAACAAATTCACGTGGAAAATCTCTCATTTCTCATATATAGGAGACAAGAGATACTATTA 579
Query 540 CTCGGATGAATTTGTGGTCGGAGATAGAAAATGGAGAATGAAGATTAGTCCAAAGGGAGA 599
|| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 580 TTCAGATGAATTTGTGGTCGGAGATAGAAAATGGAGATTGAAGATTAGTCCAAAGGGAGA 639
Query 600 CAAAAAGGTAAGAGCACTTTCAGTCTATGTTCAAGCCATGGCATATCTGCCAAATGCGGT 659
|||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 640 CAAAAAGGTAAGAGCACTTTCAGTTTATGTACAAGCCATGGCATATCTGCCAAATGCGGT 699
Query 660 AGCTTCTAGCACTTACGCAAAGCTCAAACTTCGTCTAATAAATCAGAAAAACTCTAACCA 719
||||||||||||||| |||||||||| |||||| ||| ||||||||||||||||||||||
Sbjct 700 AGCTTCTAGCACTTATGCAAAGCTCAGACTTCGGCTACTAAATCAGAAAAACTCTAACCA 759
Query 720 CATTGAGAAACGCGTTTTTCATTTTTATTCGAGAGA-AACTCAAGACGGATCAGGGATAT 778
||||||||||||||||||||||||||| |||||||| || | |||||||||||||||||
Sbjct 760 CATTGAGAAACGCGTTTTTCATTTTTACTCGAGAGAGAA-TGGAGACGGATCAGGGATAT 818
Query 779 CGGAGTTAATATCTGTGGAGGATCTAAATGATGAATCAAAAGGGTACCTTGTGGAAGACA 838
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 819 CTGAGTTAATATCTGTGGAGGATCTAAATGATGAATCAAAAGGGTACCTTGTGGAAGACT 878
Query 839 CCATTGTTCTTGAAACTACTCTGCTTTGTGTCTCTGAGACGATGTTTGTCGACTCTATCT 898
|||||||||||||||||||||| ||||| |||||||| || | | | || ||||||||||
Sbjct 879 CCATTGTTCTTGAAACTACTCTTCTTTGGGTCTCTGACACTAAGGTCGTTGACTCTATCT 938
Query 899 AATGACTCTTATTACCTCTCTCTTTCTTT-GCATACATCTTTCTTTTGTAAGCAACAAAA 957
|| ||||| |||||||||| ||||||||| ||||||||||||||||| ||||||||||||
Sbjct 939 AAAGACTCCTATTACCTCTTTCTTTCTTTTGCATACATCTTTCTTTTTTAAGCAACAAAA 998
Query 958 AGTCTCCTTCGCTAttttc--ttttcttttctgttttattgtttttttagtttGTTAAAT 1015
|||| ||| ||||||| | |||| |||| | |||| || |||||||||||||||||||
Sbjct 999 TGTCTTCTTTGCTATTTCCCCTTTTTTTTTTTTTTTT-TT-TTTTTTTAGTTTGTTAAAT 1056
Query 1016 ATATTGATGTTATTGTTGACTGATTATGTAAGAATCTTTGTAC 1058
| |||||||| |||||||||||||||||||||||||||||||
Sbjct 1057 TTTTTGATGTT-TTGTTGACTGATTATGTAAGAATCTTTGTAC 1098
> AT4G09780.1 | Symbols: | TRAF-like family protein | chr4:6159538-6161378
REVERSE LENGTH=1284
Length=1284
Score = 920 bits (498), Expect = 0.0
Identities = 576/613 (94%), Gaps = 7/613 (1%)
Strand=Plus/Plus
Query 122 ATGAGAGATTGATATTTTACCCGGCTGGAAAGGTAGAAGAAGGTGGAAAAGACCATGTTT 181
||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 279 ATG-GAGATTGATATTTTACCCGGCTGGAAAGGTAGAAGAAGGTGGAAAAGACCATATTT 337
Query 182 CGATTTATGCGAGGATCGACAATGTTGGTGCTTCTGAGATGCAGATTGATGTAGAACTCA 241
|||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 338 CGATTTATGCGAGGGTCGAAAATGTTGGTGCTTCTGAGATGCAGATTGATGTAGAACTCA 397
Query 242 AGTTCTTCATCTACAATCACAACATCAA-GAAATACTCTGTTTTCCAAGATGGAACTATG 300
|||||||| |||||||||||||| ||| |||||||||||||||||||||||||||| ||
Sbjct 398 AGTTCTTCCTCTACAATCACAACG-CAAAGAAATACTCTGTTTTCCAAGATGGAACTGTG 456
Query 301 AAGCATTATAGTAAGGAGAAAAAAGAGTGGGGATTAGCACAAATGCTTCTTCTTTCGAAG 360
||||||||||||||||||||||||||||| ||||| |||||||||||||||| |||||||
Sbjct 457 AAGCATTATAGTAAGGAGAAAAAAGAGTGCGGATTTGCACAAATGCTTCTTCGTTCGAAG 516
Query 361 TTTAACGACCCAAAAAATGGGTACATCGATGGAAATGCTTGTATCGTTGGGGTGGAGATA 420
||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||
Sbjct 517 TTTAACGACCCAAAAAATGGGTACACCGATGGAGATGCTTGTATCGTTGGGGTGGAGATA 576
Query 421 TTCGTTATAAAGCCGAGAGAGAGGGTGGAGAGGGTTGCATTCACACAAAACCCACCAAAA 480
|||||||||||||||| ||||| |||||||||||||| ||||||||||||||||||||
Sbjct 577 TTCGTTATAAAGCCGATAGAGAAGGTGGAGAGGGTTGTATTCACACAAAACCCACCAACG 636
Query 481 AACAAATTCACCTGGAAAATCTCTCATTTCTCAGAAA-TAGGAGACAAGAGATATTATTA 539
||||||||||| |||||||||||| |||||||| ||| |||||||||||| |||| ||||
Sbjct 637 AACAAATTCACATGGAAAATCTCTGATTTCTCA-AAACTAGGAGACAAGAAATATCATTA 695
Query 540 CTCGGATGAATTTGTGGTCGGAGATAGAAAATGGAGAATGAAGATTAGTCCAAAGGGAGA 599
|||||||||||||||||||||||| |||||||||||||| || ||||| |||||||||||
Sbjct 696 CTCGGATGAATTTGTGGTCGGAGAAAGAAAATGGAGAATAAAAATTAGCCCAAAGGGAGA 755
Query 600 CAAAAAGGTAAGAGCACTTTCAGTCTATGTTCAAGCCATGGCATATCTGCCAAATGCGGT 659
||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||
Sbjct 756 CAAAAAGGTAAGAGCACTTTCAGTCTATGTTCAAGCCATGGAATATTTGCCAAATGCGGT 815
Query 660 AGCTTCTAGCACTTACGCAAAGCTCAAACTTC-GTCTAATAAATCAGAAAAACTCTAACC 718
|||||||| ||||||||||||||||||||||| | ||||| |||||||||||| ||||||
Sbjct 816 AGCTTCTACCACTTACGCAAAGCTCAAACTTCAG-CTAATGAATCAGAAAAACACTAACC 874
Query 719 ACATTGAGAAACG 731
| |||||||||||
Sbjct 875 ATATTGAGAAACG 887
Score = 187 bits (101), Expect = 2e-46
Identities = 135/150 (90%), Gaps = 8/150 (5%)
Strand=Plus/Plus
Query 733 GTTTTTCATTTTTAT-TCGAGAGA-AACTCAAGACGGATCA-GGGA-TATCGGAGTTAAT 788
||||||||||||| | |||||||| || |||| |||| | |||| | || ||||||||
Sbjct 922 GTTTTTCATTTTT-TCTCGAGAGAGAA-GGAAGATGGAT-ATGGGACT-TCTGAGTTAAT 977
Query 789 ATCTGTGGAGGATCTAAATGATGAATCAAAAGGGTACCTTGTGGAAGACACCATTGTTCT 848
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 978 ATCTGTGGAGGATCTAAATGATGAATCAAAAGGGTACCTTGTGGAAGACACCATCGTTCT 1037
Query 849 TGAAACTACTCTGCTTTGTGTCTCTGAGAC 878
|||||||||| ||||||||||| |||||||
Sbjct 1038 TGAAACTACTTTGCTTTGTGTCACTGAGAC 1067
Score = 167 bits (90), Expect = 2e-40
Identities = 112/123 (91%), Gaps = 0/123 (0%)
Strand=Plus/Plus
Query 1 ACAACTCTGAAGTCAACAATCTTTTGTCCAAAGAAATTCATCATCATGGAAACTCTAAGA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 115 ACAACTCTGAAGTCAACAATCTTTTGTCCAAAGAAATTCATCATCATGGAAACCCTAAGA 174
Query 61 GAGCAGGGTCCTTCAAGCTACTTGGTTAAGCTGGTGGGTTTCTCTGAGGTTAGATTAAGT 120
||| ||| ||| |||||||||||| | ||||| || |||||||||||||| | ||| |||
Sbjct 175 GAGGAGGCTCCATCAAGCTACTTGATGAAGCTTGTTGGTTTCTCTGAGGTGAAATTCAGT 234
Query 121 CAT 123
|||
Sbjct 235 CAT 237
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51806962440
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5