BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg489832 Length=693 Score E Sequences producing significant alignments: (Bits) Value AT4G09800.1 | Symbols: RPS18C | S18 ribosomal protein | chr4:61... 1155 0.0 AT1G34030.1 | Symbols: | Ribosomal protein S13/S18 family | ch... 669 0.0 AT1G22780.1 | Symbols: PFL, RPS18A, PFL1 | Ribosomal protein S1... 534 3e-151 > AT4G09800.1 | Symbols: RPS18C | S18 ribosomal protein | chr4:6173715-6175200 FORWARD LENGTH=799 Length=799 Score = 1155 bits (625), Expect = 0.0 Identities = 671/693 (97%), Gaps = 4/693 (1%) Strand=Plus/Plus Query 1 GAAAAACCCTAGCAGACCTCTTTTGTGTTCTTCACTCTCCAGAGATCGTTTATTGCTTGA 60 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 1 GAAAAACCCTAGCAGACCTCTTTTGTGTTCTTCACTCTCCAGCGATCGTTTATTGCTTGA 60 Query 61 AGACGGCTTCTTCTTCTTCTAACAAATCTCATCTCTGCAAATCAAAATGTCTCTGGTTGC 120 |||||||||||||||| || ||||| ||||||||||| ||||||||||||||||||||| Sbjct 61 AGACGGCTTCTTCTTC-TC--ACAAACCTCATCTCTGCTAATCAAAATGTCTCTGGTTGC 117 Query 121 AAATGAGGAGTTTCAGCACATTCTTCGTGTGTTGAACACAAATGTTGATGGTAAGCAGAA 180 ||||||||||||||| |||||||||||||||||||| || |||||||||||||||||||| Sbjct 118 AAATGAGGAGTTTCAACACATTCTTCGTGTGTTGAATACTAATGTTGATGGTAAGCAGAA 177 Query 181 GATTATGTTTGCCCTTACCTCTATCAAAGGTATTGGGAGGCGATTGGCTAACATTGTCTG 240 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 178 GATTATGTTTGCCCTTACCTCTATCAAAGGTATTGGTAGGCGATTGGCTAACATTGTCTG 237 Query 241 CAAGAAGGCTGATGTCGACATGAACAAAAGGGCTGGTGAGTTATCTGCTGCTGAGATTGA 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 238 CAAGAAGGCTGATGTCGACATGAACAAAAGGGCTGGTGAGTTATCTGCTGCTGAGATTGA 297 Query 301 CAACCTCATGACAATCGTTGCAAACCCACGTCAGTTCAAGATCCCAGACTGGTTCTTGAA 360 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 298 TAACCTCATGACAATCGTTGCAAACCCACGTCAGTTCAAGATCCCAGACTGGTTCTTGAA 357 Query 361 CAGGCAGAAGGATTACAAAGATGGCAAGTATTCTCAAGTTGTCTCCAATGCACTGGACAT 420 ||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| Sbjct 358 CAGGCAGAAGGATTACAAAGATGGCAAGTATTCTCAAGTTGTCTCCAATGCTCTTGACAT 417 Query 421 GAAGCTGAGAGATGATCTTGAACGTCTCAAGAAGATCAGAAACCATCGTGGTCTGAGGCA 480 ||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| Sbjct 418 GAAGCTGAGAGATGATCTTGAACGTCTCAAGAAGATCAGAAACCACCGTGGTTTGAGGCA 477 Query 481 TTACTGGGGTCTCCGTGTGAGAGGACAACACACCAAGACTACTGGTCGCAGAGGAAAGAC 540 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 478 TTACTGGGGTCTCCGTGTCAGAGGACAACACACCAAGACTACTGGTCGCAGAGGAAAGAC 537 Query 541 TGTTGGTGTGTCAAAGAAGCGTTAAAGCAAGAGCCAATGTTGCTACTTACTGCTGTATTG 600 ||||||||| ||||||||||||||| | |||| |||||||||||||||||| |||||||| Sbjct 538 TGTTGGTGTCTCAAAGAAGCGTTAA-GAAAGATCCAATGTTGCTACTTACTTCTGTATTG 596 Query 601 GATACTTCATAAGGACCTGTTTTTATTTCGTACTAGGACCTTTTTGTGTGACGCTTTTCG 660 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 597 GATACTTCATAAGGACCTGTTTTTATTTCGTACTAGGACCTTTTTGTGTGACGCTTTTCG 656 Query 661 GGCTTTTTGTGATCACATTCCTCTGTTTTTCAT 693 |||||||||||||||||||||||||||||||| Sbjct 657 AGCTTTTTGTGATCACATTCCTCTGTTTTTCAT 689 > AT1G34030.1 | Symbols: | Ribosomal protein S13/S18 family | chr1:12370065-12371553 REVERSE LENGTH=767 Length=767 Score = 669 bits (362), Expect = 0.0 Identities = 478/533 (90%), Gaps = 11/533 (2%) Strand=Plus/Plus Query 86 ATCTCATCTCTGCAAATCAAAATGTCTCTGGTTGCAAATGAGGAGTTTCAGCACATTCTT 145 ||||| | ||| ||||||| ||||||||||||||||||||||||||||||||||||| || Sbjct 68 ATCTCTTATCTTCAAATCACAATGTCTCTGGTTGCAAATGAGGAGTTTCAGCACATT-TT 126 Query 146 -CGTGTGTTGAACACAAATGTTGATGGTAAGCAGAAGATTATGTTTGCCCTTACCTCTAT 204 |||||| | ||||| || |||||||||||||| |||||||||||||||||||||||||| Sbjct 127 GCGTGTGCTCAACACTAACGTTGATGGTAAGCAAAAGATTATGTTTGCCCTTACCTCTAT 186 Query 205 CAAAGGTATTGGGAGGCGATTGGCTAACATTGTCTGCAAGAAGGCTGATGTCGACATGAA 264 |||||||||||| ||| ||||||| ||||||||||||||||| || |||||||||||||| Sbjct 187 CAAAGGTATTGGAAGGAGATTGGCCAACATTGTCTGCAAGAAAGCCGATGTCGACATGAA 246 Query 265 CAAAAGGGCTGGTGAGTTATCTGCTGCTGAGATTGACAACCTCATGACAATCGTTGCAAA 324 ||| |||||||||||||||||||| ||||||||||||||||||||||| || |||||||| Sbjct 247 CAAGAGGGCTGGTGAGTTATCTGCAGCTGAGATTGACAACCTCATGACTATTGTTGCAAA 306 Query 325 CCCACGTCAGTTCAAGATCCCAGACTGGTTCTTGAACAGGCAGAAGGATTACAAAGATGG 384 |||| | ||||||||||| ||||||||||| |||||||| ||||| |||||||| ||||| Sbjct 307 CCCAAGACAGTTCAAGATTCCAGACTGGTTTTTGAACAGACAGAAAGATTACAAGGATGG 366 Query 385 CAAGTATTCTCAAGTTGTCTCCAATGCACTGGACATGAAGCTGAGAGATGATCTTGAACG 444 ||||| |||||||||||||||||||| || ||||||||||| || ||||||||||| || Sbjct 367 GAAGTACTCTCAAGTTGTCTCCAATGCCCTTGACATGAAGCTCAGGGATGATCTTGAGCG 426 Query 445 TCTCAAGAAGATCAGAAACCATCGTGGTCTGAGGCATTACTGGGGTCTCCGTGTGAGAGG 504 ||||||||| ||||||||||||||||||||||| |||||||||||||||||||| | || Sbjct 427 TCTCAAGAAAATCAGAAACCATCGTGGTCTGAGACATTACTGGGGTCTCCGTGTTCGTGG 486 Query 505 ACAACACACCAAGACTACTGGTCGCAGAGGAAAGACTGTTGGTGTGTCAAAGAAGCGTTA 564 ||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| Sbjct 487 ACAACACACCAAGACAACTGGTCGCAGAGGAAAGACTGTTGGTGTGTCTAAGAAGCGTTA 546 Query 565 AAGCAAGAGCCAATGTTGCTACTTACTGCTGTATTGGATACTTC-ATAAGGAC 616 | || | |||||||||| || | |||| ||||||| ||| |||||||| Sbjct 547 A-GC-----C-AATGTTGCTAGTTGCAGCTGGATTGGAT-CTTTGATAAGGAC 591 > AT1G22780.1 | Symbols: PFL, RPS18A, PFL1 | Ribosomal protein S13/S18 family | chr1:8067864-8069342 FORWARD LENGTH=764 Length=764 Score = 534 bits (289), Expect = 3e-151 Identities = 408/466 (88%), Gaps = 6/466 (1%) Strand=Plus/Plus Query 104 AAAATGTCTCTGGTTGCAAATGAGGAGTTTCAGCACATTCTTCGTGTGTTGAACACAAAT 163 ||||||||||| ||||| || |||||||||||||| ||||| |||||| | || || ||| Sbjct 124 AAAATGTCTCTAGTTGCGAACGAGGAGTTTCAGCATATTCTGCGTGTGCTCAATACTAAT 183 Query 164 GTTGATGGTAAGCAGAAGATTATGTTTGCCCTT-ACCTCTATCAAAGGTATTGGGAGGCG 222 || ||||| ||||| || |||||||||| | || ||||| ||||| |||||||| ||||| Sbjct 184 GTCGATGGGAAGCAAAAAATTATGTTTG-CTTTGACCTCAATCAAGGGTATTGGAAGGCG 242 Query 223 ATTGGCTAACATTGTCTGCAAGAAGGCTGATGTCGACATGAACAAAAGGGCTGGTGAGTT 282 ||||||||||||||| ||||||||||||||||| ||||||||||| |||||||| || | Sbjct 243 ATTGGCTAACATTGTGTGCAAGAAGGCTGATGTTGACATGAACAAGAGGGCTGGAGAACT 302 Query 283 ATCTGCTGCTGAGATTGACAACCTCATGACAATCGTTGCAAACCCACGTCAGTTCAAGAT 342 | ||||||||||||||| |||||||||||||||||||| ||||| || ||||||||||| Sbjct 303 AAGTGCTGCTGAGATTGATAACCTCATGACAATCGTTGCTAACCCTCGCCAGTTCAAGAT 362 Query 343 CCCAGACTGG-TTCTTGAACAGGCAGAAGGATTACAAAGATGGCAAGTATTCTCAAGTTG 401 |||||||||| ||||| ||||| || ||||||||||| ||||| || || || ||||||| Sbjct 363 CCCAGACTGGTTTCTT-AACAGACAAAAGGATTACAAGGATGGGAAATACTCCCAAGTTG 421 Query 402 TCTCCAATGCACTGGACATGAAGCTGAGAGATGATCTTGAACGTCTCAAGAAGATCAGAA 461 | |||||||| || ||||||||| |||||||||||||||| ||||||||||||||||||| Sbjct 422 TTTCCAATGCTCTTGACATGAAGTTGAGAGATGATCTTGAGCGTCTCAAGAAGATCAGAA 481 Query 462 ACCATCGTGGTCTGAGGCATTACTGGGGTCTCCGTGTGA-GAGGACAACACACCAAGACT 520 ||||||||||||||||||| ||||||||||||||||| | | ||||| |||||||| || Sbjct 482 ACCATCGTGGTCTGAGGCACTACTGGGGTCTCCGTGT-ACGTGGACAGCACACCAAAACC 540 Query 521 ACTGGTCGCAGAGGAAAGACTGTTGGTGTGTCAAAGAAGCGTTAAA 566 || || ||| | ||||||||||||||||| || ||||||||||||| Sbjct 541 ACCGGACGCCGTGGAAAGACTGTTGGTGTTTCCAAGAAGCGTTAAA 586 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 33556410196 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5