BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489832
Length=693
Score E
Sequences producing significant alignments: (Bits) Value
AT4G09800.1 | Symbols: RPS18C | S18 ribosomal protein | chr4:61... 1155 0.0
AT1G34030.1 | Symbols: | Ribosomal protein S13/S18 family | ch... 669 0.0
AT1G22780.1 | Symbols: PFL, RPS18A, PFL1 | Ribosomal protein S1... 534 3e-151
> AT4G09800.1 | Symbols: RPS18C | S18 ribosomal protein | chr4:6173715-6175200
FORWARD LENGTH=799
Length=799
Score = 1155 bits (625), Expect = 0.0
Identities = 671/693 (97%), Gaps = 4/693 (1%)
Strand=Plus/Plus
Query 1 GAAAAACCCTAGCAGACCTCTTTTGTGTTCTTCACTCTCCAGAGATCGTTTATTGCTTGA 60
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1 GAAAAACCCTAGCAGACCTCTTTTGTGTTCTTCACTCTCCAGCGATCGTTTATTGCTTGA 60
Query 61 AGACGGCTTCTTCTTCTTCTAACAAATCTCATCTCTGCAAATCAAAATGTCTCTGGTTGC 120
|||||||||||||||| || ||||| ||||||||||| |||||||||||||||||||||
Sbjct 61 AGACGGCTTCTTCTTC-TC--ACAAACCTCATCTCTGCTAATCAAAATGTCTCTGGTTGC 117
Query 121 AAATGAGGAGTTTCAGCACATTCTTCGTGTGTTGAACACAAATGTTGATGGTAAGCAGAA 180
||||||||||||||| |||||||||||||||||||| || ||||||||||||||||||||
Sbjct 118 AAATGAGGAGTTTCAACACATTCTTCGTGTGTTGAATACTAATGTTGATGGTAAGCAGAA 177
Query 181 GATTATGTTTGCCCTTACCTCTATCAAAGGTATTGGGAGGCGATTGGCTAACATTGTCTG 240
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 178 GATTATGTTTGCCCTTACCTCTATCAAAGGTATTGGTAGGCGATTGGCTAACATTGTCTG 237
Query 241 CAAGAAGGCTGATGTCGACATGAACAAAAGGGCTGGTGAGTTATCTGCTGCTGAGATTGA 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 238 CAAGAAGGCTGATGTCGACATGAACAAAAGGGCTGGTGAGTTATCTGCTGCTGAGATTGA 297
Query 301 CAACCTCATGACAATCGTTGCAAACCCACGTCAGTTCAAGATCCCAGACTGGTTCTTGAA 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 298 TAACCTCATGACAATCGTTGCAAACCCACGTCAGTTCAAGATCCCAGACTGGTTCTTGAA 357
Query 361 CAGGCAGAAGGATTACAAAGATGGCAAGTATTCTCAAGTTGTCTCCAATGCACTGGACAT 420
||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 358 CAGGCAGAAGGATTACAAAGATGGCAAGTATTCTCAAGTTGTCTCCAATGCTCTTGACAT 417
Query 421 GAAGCTGAGAGATGATCTTGAACGTCTCAAGAAGATCAGAAACCATCGTGGTCTGAGGCA 480
||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||
Sbjct 418 GAAGCTGAGAGATGATCTTGAACGTCTCAAGAAGATCAGAAACCACCGTGGTTTGAGGCA 477
Query 481 TTACTGGGGTCTCCGTGTGAGAGGACAACACACCAAGACTACTGGTCGCAGAGGAAAGAC 540
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 478 TTACTGGGGTCTCCGTGTCAGAGGACAACACACCAAGACTACTGGTCGCAGAGGAAAGAC 537
Query 541 TGTTGGTGTGTCAAAGAAGCGTTAAAGCAAGAGCCAATGTTGCTACTTACTGCTGTATTG 600
||||||||| ||||||||||||||| | |||| |||||||||||||||||| ||||||||
Sbjct 538 TGTTGGTGTCTCAAAGAAGCGTTAA-GAAAGATCCAATGTTGCTACTTACTTCTGTATTG 596
Query 601 GATACTTCATAAGGACCTGTTTTTATTTCGTACTAGGACCTTTTTGTGTGACGCTTTTCG 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 597 GATACTTCATAAGGACCTGTTTTTATTTCGTACTAGGACCTTTTTGTGTGACGCTTTTCG 656
Query 661 GGCTTTTTGTGATCACATTCCTCTGTTTTTCAT 693
||||||||||||||||||||||||||||||||
Sbjct 657 AGCTTTTTGTGATCACATTCCTCTGTTTTTCAT 689
> AT1G34030.1 | Symbols: | Ribosomal protein S13/S18 family |
chr1:12370065-12371553 REVERSE LENGTH=767
Length=767
Score = 669 bits (362), Expect = 0.0
Identities = 478/533 (90%), Gaps = 11/533 (2%)
Strand=Plus/Plus
Query 86 ATCTCATCTCTGCAAATCAAAATGTCTCTGGTTGCAAATGAGGAGTTTCAGCACATTCTT 145
||||| | ||| ||||||| ||||||||||||||||||||||||||||||||||||| ||
Sbjct 68 ATCTCTTATCTTCAAATCACAATGTCTCTGGTTGCAAATGAGGAGTTTCAGCACATT-TT 126
Query 146 -CGTGTGTTGAACACAAATGTTGATGGTAAGCAGAAGATTATGTTTGCCCTTACCTCTAT 204
|||||| | ||||| || |||||||||||||| ||||||||||||||||||||||||||
Sbjct 127 GCGTGTGCTCAACACTAACGTTGATGGTAAGCAAAAGATTATGTTTGCCCTTACCTCTAT 186
Query 205 CAAAGGTATTGGGAGGCGATTGGCTAACATTGTCTGCAAGAAGGCTGATGTCGACATGAA 264
|||||||||||| ||| ||||||| ||||||||||||||||| || ||||||||||||||
Sbjct 187 CAAAGGTATTGGAAGGAGATTGGCCAACATTGTCTGCAAGAAAGCCGATGTCGACATGAA 246
Query 265 CAAAAGGGCTGGTGAGTTATCTGCTGCTGAGATTGACAACCTCATGACAATCGTTGCAAA 324
||| |||||||||||||||||||| ||||||||||||||||||||||| || ||||||||
Sbjct 247 CAAGAGGGCTGGTGAGTTATCTGCAGCTGAGATTGACAACCTCATGACTATTGTTGCAAA 306
Query 325 CCCACGTCAGTTCAAGATCCCAGACTGGTTCTTGAACAGGCAGAAGGATTACAAAGATGG 384
|||| | ||||||||||| ||||||||||| |||||||| ||||| |||||||| |||||
Sbjct 307 CCCAAGACAGTTCAAGATTCCAGACTGGTTTTTGAACAGACAGAAAGATTACAAGGATGG 366
Query 385 CAAGTATTCTCAAGTTGTCTCCAATGCACTGGACATGAAGCTGAGAGATGATCTTGAACG 444
||||| |||||||||||||||||||| || ||||||||||| || ||||||||||| ||
Sbjct 367 GAAGTACTCTCAAGTTGTCTCCAATGCCCTTGACATGAAGCTCAGGGATGATCTTGAGCG 426
Query 445 TCTCAAGAAGATCAGAAACCATCGTGGTCTGAGGCATTACTGGGGTCTCCGTGTGAGAGG 504
||||||||| ||||||||||||||||||||||| |||||||||||||||||||| | ||
Sbjct 427 TCTCAAGAAAATCAGAAACCATCGTGGTCTGAGACATTACTGGGGTCTCCGTGTTCGTGG 486
Query 505 ACAACACACCAAGACTACTGGTCGCAGAGGAAAGACTGTTGGTGTGTCAAAGAAGCGTTA 564
||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 487 ACAACACACCAAGACAACTGGTCGCAGAGGAAAGACTGTTGGTGTGTCTAAGAAGCGTTA 546
Query 565 AAGCAAGAGCCAATGTTGCTACTTACTGCTGTATTGGATACTTC-ATAAGGAC 616
| || | |||||||||| || | |||| ||||||| ||| ||||||||
Sbjct 547 A-GC-----C-AATGTTGCTAGTTGCAGCTGGATTGGAT-CTTTGATAAGGAC 591
> AT1G22780.1 | Symbols: PFL, RPS18A, PFL1 | Ribosomal protein
S13/S18 family | chr1:8067864-8069342 FORWARD LENGTH=764
Length=764
Score = 534 bits (289), Expect = 3e-151
Identities = 408/466 (88%), Gaps = 6/466 (1%)
Strand=Plus/Plus
Query 104 AAAATGTCTCTGGTTGCAAATGAGGAGTTTCAGCACATTCTTCGTGTGTTGAACACAAAT 163
||||||||||| ||||| || |||||||||||||| ||||| |||||| | || || |||
Sbjct 124 AAAATGTCTCTAGTTGCGAACGAGGAGTTTCAGCATATTCTGCGTGTGCTCAATACTAAT 183
Query 164 GTTGATGGTAAGCAGAAGATTATGTTTGCCCTT-ACCTCTATCAAAGGTATTGGGAGGCG 222
|| ||||| ||||| || |||||||||| | || ||||| ||||| |||||||| |||||
Sbjct 184 GTCGATGGGAAGCAAAAAATTATGTTTG-CTTTGACCTCAATCAAGGGTATTGGAAGGCG 242
Query 223 ATTGGCTAACATTGTCTGCAAGAAGGCTGATGTCGACATGAACAAAAGGGCTGGTGAGTT 282
||||||||||||||| ||||||||||||||||| ||||||||||| |||||||| || |
Sbjct 243 ATTGGCTAACATTGTGTGCAAGAAGGCTGATGTTGACATGAACAAGAGGGCTGGAGAACT 302
Query 283 ATCTGCTGCTGAGATTGACAACCTCATGACAATCGTTGCAAACCCACGTCAGTTCAAGAT 342
| ||||||||||||||| |||||||||||||||||||| ||||| || |||||||||||
Sbjct 303 AAGTGCTGCTGAGATTGATAACCTCATGACAATCGTTGCTAACCCTCGCCAGTTCAAGAT 362
Query 343 CCCAGACTGG-TTCTTGAACAGGCAGAAGGATTACAAAGATGGCAAGTATTCTCAAGTTG 401
|||||||||| ||||| ||||| || ||||||||||| ||||| || || || |||||||
Sbjct 363 CCCAGACTGGTTTCTT-AACAGACAAAAGGATTACAAGGATGGGAAATACTCCCAAGTTG 421
Query 402 TCTCCAATGCACTGGACATGAAGCTGAGAGATGATCTTGAACGTCTCAAGAAGATCAGAA 461
| |||||||| || ||||||||| |||||||||||||||| |||||||||||||||||||
Sbjct 422 TTTCCAATGCTCTTGACATGAAGTTGAGAGATGATCTTGAGCGTCTCAAGAAGATCAGAA 481
Query 462 ACCATCGTGGTCTGAGGCATTACTGGGGTCTCCGTGTGA-GAGGACAACACACCAAGACT 520
||||||||||||||||||| ||||||||||||||||| | | ||||| |||||||| ||
Sbjct 482 ACCATCGTGGTCTGAGGCACTACTGGGGTCTCCGTGT-ACGTGGACAGCACACCAAAACC 540
Query 521 ACTGGTCGCAGAGGAAAGACTGTTGGTGTGTCAAAGAAGCGTTAAA 566
|| || ||| | ||||||||||||||||| || |||||||||||||
Sbjct 541 ACCGGACGCCGTGGAAAGACTGTTGGTGTTTCCAAGAAGCGTTAAA 586
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33556410196
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5