BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489833
Length=1128
Score E
Sequences producing significant alignments: (Bits) Value
AT4G09810.1 | Symbols: | Nucleotide-sugar transporter family p... 1375 0.0
> AT4G09810.1 | Symbols: | Nucleotide-sugar transporter family
protein | chr4:6175176-6177293 REVERSE LENGTH=1388
Length=1388
Score = 1375 bits (744), Expect = 0.0
Identities = 1036/1168 (89%), Gaps = 56/1168 (5%)
Strand=Plus/Plus
Query 1 AGATCACTCACCAATCCAATTCAAATACTTAACCACCGAGCAATCTCGCCGGAAACAGAG 60
||||||||||| |||||||||||| |||| |||||||||||||||||||||||||||||
Sbjct 1 AGATCACTCACTGATCCAATTCAAAAACTTCACCACCGAGCAATCTCGCCGGAAACAGAG 60
Query 61 CCTCTCTTCTTCTCCACCAATCAAAATAACGATTCTCGCTTC-GTCAATTTCTGTA-T-- 116
|||||||||||| || || | | | | |||| || | | ||| | | | |
Sbjct 61 CCTCTCTTCTTCACCGCC-GT---ATTTTC--TTCT-TCTCCAG-AAATGT-GGGATTGA 111
Query 117 AGAATG-TG--G-TG-A-TCGAAGAAGAACAATGGCTCCAGTGAAAAAATCTGATAAGAA 170
|||| | || | | | ||||| |||||||||||||||||||||||| ||||||||
Sbjct 112 AGAA-GTTGACGAAGAAGACGAAGTTTAACAATGGCTCCAGTGAAAAAATCAGATAAGAA 170
Query 171 AGCAACATTAGATGCTGCTGCTTGGATCTTCAATGTTGTTACTTCTGTTGGAATCATCAT 230
||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 171 AGCAACATTAGATGCTGCTGCTTGGATGTTCAATGTTGTTACTTCTGTTGGTATCATCAT 230
Query 231 TGTTAATAAAGCTTTAA----T--TTATGGCTTTAGCTTTGCAACAACCTTAACCGGTTT 284
||||||||||||||||| | |||||||||||||||||| ||||| |||||||||||
Sbjct 231 TGTTAATAAAGCTTTAATGGCTACTTATGGCTTTAGCTTTGCTACAACGTTAACCGGTTT 290
Query 285 ACATTTCGCTACGAAGACGTTGATGACACTTGTTTTAAGATGTTTAGGATATATTCAGCC 344
||||||||| || | |||||||||||| |||||||||||||||||||||||||| || ||
Sbjct 291 ACATTTCGCCACTACGACGTTGATGACGCTTGTTTTAAGATGTTTAGGATATATACAACC 350
Query 345 TTCTCATCTTCCATTTACAGACCTT-TTAAAGTTTATTTTGTTTGCGAATTTTTCGATTG 403
||||||||||||||||||||| ||| || ||||||||| ||||||| |||||||||||||
Sbjct 351 TTCTCATCTTCCATTTACAGAGCTTCTT-AAGTTTATTCTGTTTGCTAATTTTTCGATTG 409
Query 404 TTGGAATGAATGTTAGTCGTATGTGGAACTCTGTTGGG-TTT-T---A-T---AAG--T- 451
|||||||||||||||||| ||||||||||||||||||| ||| | | | ||| |
Sbjct 410 TTGGAATGAATGTTAGTCTTATGTGGAACTCTGTTGGGTTTTATCAGATTGCAAAGCTTA 469
Query 452 --ATGATTCCCGTGTCATGCTTGTTGGAAGTTGTATATATTTGATAAGATTCGTTACTCG 509
|||||||| || ||||||||||||||| ||| ||||||||||||||||||||||
Sbjct 470 GCATGATTCCTGTATCATGCTTGTTGGAA---GTA-GTATTTGATAAGATTCGTTACTCA 525
Query 510 AGAGATACAAAACTTAGCATTGGACTTGTTCTTGTTGGTGTTGGTGTTTGTACTGTTACT 569
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 526 AGAGATACAAAACTTAGCATTGGACTTGTTCTTGTTGGTGTTGGTGTTTGTACTGTTACT 585
Query 570 GACGTTAGTGTTAACACCAAAGGTTTCGTTGCTGCTTTTGTTGCTGTGTGGAGTACTGCT 629
|| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 586 GATGTTAGTGTTAACACCAAAGGTTTTGTTGCTGCTTTTGTTGCTGTGTGGAGTACTGCT 645
Query 630 TTGCAATAATA-TAT-T---TCA-CCAAAG-G-AAGTACTCACTTAGCTCATTCAACCTA 681
|||||| |||| ||| | | | | | || | |||||||| ||||||||||||||||||
Sbjct 646 TTGCAACAATACTATGTACATTATCTACAGCGAAAGTACTCGCTTAGCTCATTCAACCTA 705
Query 682 CTGGGTCATACTGCTCCAGCCCAGGCTGCAACGTTGTTGATAGTCGGTCCATTTCTCGAT 741
|||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 706 CTGGGTCATACTGCTCCAGCTCAGGCTGCAACGTTATTGATAGTCGGTCCATTTCTCGAC 765
Query 742 TATTGGTTGACAGACAAACGGGTAGACATGTACGATTACAACTTTGTCTCTCTGATGTTT 801
|||||||||||||||||||||||||||||||| |||||||||| ||||||| ||||||||
Sbjct 766 TATTGGTTGACAGACAAACGGGTAGACATGTATGATTACAACTCTGTCTCTGTGATGTTT 825
Query 802 ATAACCCTTTTGTGCACAATAGCTATCGGGACAATTCTAAGCCAGTTCATCTGCATCGGG 861
|||||||| | |||||||||||| |||||||||| || |||||||||||||||||||||
Sbjct 826 ATAACCCTCTCGTGCACAATAGCAATCGGGACAAACCTGAGCCAGTTCATCTGCATCGGG 885
Query 862 AGATTCACAGCGGTATCATTCCAAGTCCTGGGCCATATGAAGACGATCTTGGTGCTGGTA 921
||||||||||| || ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 886 AGATTCACAGCAGTGTCATTCCAAGTCCTGGGCCATATGAAGACGATCTTGGTGCTTGTA 945
Query 922 ATGGGCTTCTTCTTCTTTGACAGAGATGGTCTTAACCTGCATGTGGTCCTTGGCATGATT 981
|||||||||||||||||||||||||||||||| |||||||||||| | |||||||||||
Sbjct 946 ATGGGCTTCTTCTTCTTTGACAGAGATGGTCTAAACCTGCATGTGATTCTTGGCATGATC 1005
Query 982 ATTGCAGTACTCGGGATGATCTGGTACGGTAATGCCTCGTCCAAGCCAGGCGGTAAAGAG 1041
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 1006 ATTGCAGTACTCGGGATGATCTGGTACGGTAATGCCTCGTCCAAGCCAGGCGGCAAGGAG 1065
Query 1042 AAGAAGAATTATTCTCTTCCAACGACCCGACAACAGAAACA-GGGAGCTGCTTCGGATTC 1100
|||||||||||||||||||||||||||||||||||||||| ||| ||| |||| |||||
Sbjct 1066 AAGAAGAATTATTCTCTTCCAACGACCCGACAACAGAAACTTGGG-GCTACTTCAGATTC 1124
Query 1101 TGATGAATACCAAGGTAAAGCTTAGCAA 1128
||||||| | | || |||||| ||||||
Sbjct 1125 TGATGAACATCGAGATAAAGCGTAGCAA 1152
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55321000590
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5