BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489834
Length=1708
Score E
Sequences producing significant alignments: (Bits) Value
AT4G09820.1 | Symbols: TT8, BHLH42 | basic helix-loop-helix (bH... 2527 0.0
> AT4G09820.1 | Symbols: TT8, BHLH42 | basic helix-loop-helix (bHLH)
DNA-binding superfamily protein | chr4:6182023-6186493
FORWARD LENGTH=1833
Length=1833
Score = 2527 bits (1368), Expect = 0.0
Identities = 1602/1714 (93%), Gaps = 19/1714 (1%)
Strand=Plus/Plus
Query 1 TTTT-GTATCTCCGGGAAAGATGGATGAATCAAGTATTCTTCCGGCAGAGAAAGTGGCCG 59
|||| ||||||||||||| ||||||||||||||||||| |||||||||||||||||||||
Sbjct 25 TTTTCGTATCTCCGGGAACGATGGATGAATCAAGTATTATTCCGGCAGAGAAAGTGGCCG 84
Query 60 GAGCTGAGAAAAGAGAGCTGCAAGGGCTGCTTAAGACCGCGGTTCAATCTGTGGAGTGGA 119
|||||||||||| |||||| ||||||||||||||||| ||||||||||||||||| ||||
Sbjct 85 GAGCTGAGAAAAAAGAGCTTCAAGGGCTGCTTAAGACGGCGGTTCAATCTGTGGACTGGA 144
Query 120 CTTATAGTGTCTTCTGGCAATTTTGTCCTCAACAACGGGTATTGGTGTGGGCGAGTGGAT 179
|||||||||||||||||||||||||||||||||||||||| |||||||||| || |||||
Sbjct 145 CTTATAGTGTCTTCTGGCAATTTTGTCCTCAACAACGGGTCTTGGTGTGGGGGAATGGAT 204
Query 180 ACTACAACGGTGCAATAAAGACGAGGAAGACAACTCAGCCGGCGGAGGTGACCGCGGAAG 239
||||||||||||||||||||||||||||||||||||| || ||||||||||| || ||||
Sbjct 205 ACTACAACGGTGCAATAAAGACGAGGAAGACAACTCAACCAGCGGAGGTGACGGCAGAAG 264
Query 240 AAGCTGCGTTAGAGAGGAGCCAACAGCTGAGGGAGCTTTATGAGACACTTTTAGCCGGAG 299
| || ||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 265 AGGCGGCGTTAGAGAGGAGCCAACAGCTCAGGGAGCTTTATGAGACACTTTTAGCCGGAG 324
Query 300 AGTCAACGTCAGAAGCAAGGGCATGCACCGCATTATCGCCGGAGGATTTAACGGAGACTG 359
||||||||||||||||||| |||||||||||||| || ||||||||||| |||||||| |
Sbjct 325 AGTCAACGTCAGAAGCAAGAGCATGCACCGCATTGTCACCGGAGGATTTGACGGAGACAG 384
Query 360 AATGGTTTTATCTAATGTGTGTCTCTTTCTCTTTCCCTCCTCCTTCTGGGATGCCAGGAA 419
||||||||||||||||||| |||||||||||||| |||||||| ||||||||||||||||
Sbjct 385 AATGGTTTTATCTAATGTGCGTCTCTTTCTCTTTTCCTCCTCCATCTGGGATGCCAGGAA 444
Query 420 AAGCGTATGCGAGGAGGAAGCACGTATGGCTAAGTTGTGCAAATGAAGTTGACAGTAAAA 479
|||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 445 AAGCGTATGCAAGGAGGAAGCACGTATGGCTAAGTGGTGCAAATGAAGTTGACAGTAAAA 504
Query 480 CTTTTTCTAGGGCTATTCTTGCTAAGAGTGCTAAAATTCAGACTGTGGTTTGCATTCCCA 539
|||||||||| |||||||| ||||||||||||||||||||||| |||||||||||||| |
Sbjct 505 CTTTTTCTAGAGCTATTCTCGCTAAGAGTGCTAAAATTCAGACAGTGGTTTGCATTCCAA 564
Query 540 TGCTTGATGGTGTTGTGGAACTAGGAACAACGAAAAAGGTAAGAGAAGGTGTAGAGTTTG 599
||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||
Sbjct 565 TGCTTGATGGTGTTGTGGAACTAGGCACAACGAAAAAGGTAAGAGAAGATGTAGAGTTTG 624
Query 600 TTGAGCTCATAAAGAGTTTCTTCCATGACCACTGCAAGTCGAATCCAAAGCAGGCTCTTT 659
||||||||| ||||||||||||| |||||||||||||| |||| ||||||| ||||||||
Sbjct 625 TTGAGCTCACAAAGAGTTTCTTCTATGACCACTGCAAGACGAACCCAAAGCCGGCTCTTT 684
Query 660 CTGAACACTCCACCTACCAAGTGCATgaagaagctg-a-a-gaagaagaagtagaagaag 716
||||||||||||||||| |||||||||||||||| | | | |||||||||||||||||||
Sbjct 685 CTGAACACTCCACCTACGAAGTGCATGAAGAAGCCGAAGACGAAGAAGAAGTAGAAGAAG 744
Query 717 aaATGACAATGTCAGAGGAGATGAGGCTTGGCTCTCCTGATGATGACGATGTCTCCAATC 776
| ||||||||||||||||| |||||||||||||||||||||||||| ||||| |||||||
Sbjct 745 AGATGACAATGTCAGAGGAAATGAGGCTTGGCTCTCCTGATGATGAAGATGTTTCCAATC 804
Query 777 AAAATCTACACTCTGATCATCATATAGAATCAAGCCACACGTTAGACACACACATGGACA 836
|||||||||||||||||| |||||| ||||||| ||| |||||||||||||| |||||||
Sbjct 805 AAAATCTACACTCTGATCTTCATATTGAATCAACCCATACGTTAGACACACATATGGACA 864
Query 837 TGATGAATCTAATGGAGGAAGGTGGAAACTATTCTCAGACAGTAACAACACTTCTTC-TG 895
||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 865 TGATGAATCTAATGGAGGAAGGTGGAAACTATTCTCAGACAGTAACAACACTTCT-CATG 923
Query 896 TCACATCCCACGAGTCTTCTTTCAGATTCAGTTTCCACATCTTCTTACATCCAATCCTCG 955
||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 924 TCACACCCCACAAGTCTTCTTTCAGATTCAGTTTCCACATCTTCTTACATCCAATCATCG 983
Query 956 TTTGCCACGTGGAGGGTTGAGAATGTCAAAGACCATCAGCGAGTAGAGAAAGCGGCTTCG 1015
||||||||||||||||||||||||| |||||| ||||||| ||| || ||| |||| ||
Sbjct 984 TTTGCCACGTGGAGGGTTGAGAATGGCAAAGAGCATCAGCAAGT-GA-AAA-CGGCGCCG 1040
Query 1016 TCTTCACAATGGATGCTCAAACACATGATCTTGAGAGTTCCTTTCCTCCATGACAACACT 1075
|| ||||||||| |||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 1041 TCGTCACAATGGGTGCTCAAACAAATGATCTTCAGAGTTCCTTTCCTCCATGACAACACT 1100
Query 1076 AAAGAGAAGAGGCTACCGCGGGAAGAGCTGAACCACGTAGTGGCAGAGCGACGCAGGAGA 1135
||||| |||||||||||||||||||| |||| ||||||||| |||||||||||||||||
Sbjct 1101 AAAGATAAGAGGCTACCGCGGGAAGATCTGAGCCACGTAGTAGCAGAGCGACGCAGGAGG 1160
Query 1136 GAGAAGCTTAACGAGAAATTCATAACGTTGAGATCAATGGTTCCATTTGTGACAAAGATG 1195
|||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1161 GAGAAGCTGAACGAGAAATTCATAACGTTGAGATCAATGGTTCCATTTGTGACCAAGATG 1220
Query 1196 GATAAAGTATCAATCCTTGGAGACACTATTGCGTACGTAAATCATCTTCGAAAGAGGGTC 1255
|||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1221 GATAAAGTCTCAATCCTTGGAGACACCATTGCGTACGTAAATCATCTTCGAAAGAGGGTC 1280
Query 1256 CATGAGCTTGAGAGTACTCATCATGAGCAACAACATAAGCGGACACGTACTTGTAAGAGA 1315
||||||||||||| |||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 1281 CATGAGCTTGAGAATACTCATCATGAGCAACAGCATAAGCGGACGCGTACTTGTAAGAGA 1340
Query 1316 AAAACATCGGAAGAGGTGGAGGTTTCCATCATAGAGAGTGATGTTTTGTTAGAGATGAGA 1375
||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1341 AAAACATCGGAGGAGGTGGAGGTTTCCATCATAGAGAATGATGTTTTGTTAGAGATGAGA 1400
Query 1376 TGCGAGTACCGAGATGGTTTGTTGCTTGATATTCTTCAGGTTCTTCATGAGCTTGGTATA 1435
|| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1401 TGTGAGTACCGAGATGGTTTGTTGCTTGACATTCTTCAGGTTCTTCATGAGCTTGGTATA 1460
Query 1436 GAGACTACTGCGGTTCATACCGCGGTAAACGACC-TAGATTTTGAGGCGGAGATAAGGGC 1494
|||||||| || ||||||||| |||| ||||||| | ||||| |||||||||||||||||
Sbjct 1461 GAGACTACGGCAGTTCATACCTCGGTGAACGACCAT-GATTTCGAGGCGGAGATAAGGGC 1519
Query 1495 GAAAGTGAGAGGGAAGAAAGCAAGCATCGCTGAGGTCAAAAGAGCCATCCACCAAGTCAT 1554
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1520 GAAAGTAAGAGGGAAGAAAGCAAGCATCGCTGAGGTCAAAAGAGCCATCCACCAAGTCAT 1579
Query 1555 AGTACATGATACTACTCTATAGATCCTAACTTTATTGATGCCAACTCTAGAGAAAGATAA 1614
| |||||||||||| |||||||| |||||||||||||||||||||||||||||| |||||
Sbjct 1580 AATACATGATACTAATCTATAGACCCTAACTTTATTGATGCCAACTCTAGAGAAGGATAA 1639
Query 1615 TTAAACATATTTTTGTTTTAGCCTCACGTTTATCACGACATCAGTTACATACAGTATATC 1674
|||| | |||||||||||||||||||| | ||| | ||||||||||||||| ||||
Sbjct 1640 TTAAGCGTATTTTTGTTTTAGCCTCACATGTATTAAGACATCAGTTACATA---TATA-- 1694
Query 1675 GGCCCCGGATGCAACATATAAATGCAAATGTACT 1708
| || |||||||||||||||||| |||||||||
Sbjct 1695 G-CC--GGATGCAACATATAAATGAAAATGTACT 1725
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 84437316690
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5