BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489836
Length=2062
Score E
Sequences producing significant alignments: (Bits) Value
AT2G17980.1 | Symbols: ATSLY1 | Sec1/munc18-like (SM) proteins ... 2822 0.0
> AT2G17980.1 | Symbols: ATSLY1 | Sec1/munc18-like (SM) proteins
superfamily | chr2:7824166-7826597 FORWARD LENGTH=2263
Length=2263
Score = 2822 bits (1528), Expect = 0.0
Identities = 1886/2059 (92%), Gaps = 24/2059 (1%)
Strand=Plus/Plus
Query 18 TAGATCTCTTTGTTTCTGCTGTTTTTCATTGTTGGATCTGCGTTTCGCAAAGGGAGATAC 77
||||||||||||||||| ||| ||||||| ||||||||||||||| ||||||||||||||
Sbjct 66 TAGATCTCTTTGTTTCTACTGCTTTTCATCGTTGGATCTGCGTTTTGCAAAGGGAGATAC 125
Query 78 AGAGAGGAATAGCTCAGAATTGACAAGTTGttttttttCTCTAATCC-AGCGAATCTCAA 136
||| |||||||||| ||||||||||| | ||| |||||||||| | ||||||||||
Sbjct 126 AGAAAGGAATAGCTTTGAATTGACAAG--G---TTTCTCTCTAATCCAACCGAATCTCAA 180
Query 137 GCTTCCATGGCTCTCAATCTCCGTCAGAAACAGACTGAATGTATAATCCGTATGCTAAAT 196
|||||||||||||||||||||||||||||||||||||||||| ||||||| ||| | |||
Sbjct 181 GCTTCCATGGCTCTCAATCTCCGTCAGAAACAGACTGAATGTGTAATCCGGATGTTGAAT 240
Query 197 CTGAATCAACCTCTGAATCCAAGTGGAACTGCGAATGAAGAAGTTTACAAGATCTTGATC 256
||||| |||||| |||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 241 CTGAACCAACCTTTGAATCCAAGTGGAACTGCGAACGAAGAAGTTTACAAGATCTTGATT 300
Query 257 TACGACACATTCTGTCAAAACATTCTATCACCATTGATCAATGTCAAGGATCTGCGTAAG 316
||||| | || ||||| ||||||||||| ||||||| | ||||||||||||||||||||
Sbjct 301 TACGATAGGTTTTGTCAGAACATTCTATCTCCATTGACCCATGTCAAGGATCTGCGTAAG 360
Query 317 CATGGAGTTACACTCTACTTTCTCATAGACAAAGATCGA-AGGCCCGTTCATGATG-TCC 374
|||||||||||||||| |||||||||||||||||||||| | || |||||||||| |||
Sbjct 361 CATGGAGTTACACTCTTCTTTCTCATAGACAAAGATCGACA-ACCTGTTCATGATGTTCC 419
Query 375 CTGCTGTCTTCTTTGTTCAACCCACTGAATCCAACCTACAGAGGATCATAGCTGATGCTT 434
| ||||||| |||||||||||| |||||||||||||| |||||||||||||| |||||||
Sbjct 420 C-GCTGTCTACTTTGTTCAACCAACTGAATCCAACCTCCAGAGGATCATAGCCGATGCTT 478
Query 435 CTAGATCTCTCTACGATACCTTTCATCTGAATTTCTCGTCTTCGATCCCTCGCAAGCTTC 494
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||
Sbjct 479 CTAGATCTCTCTACGATACCTTTCATCTGAATTTCTCGTCTTCGATCCCTCGTAAGTTTC 538
Query 495 TTGAAGAGCTAGCTTCCGGGACTCTCAAATCTGGTTCTGTTGATAAAGTCTCGAAAGTGC 554
|||||||||||||||| |||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 539 TTGAAGAGCTAGCTTCTGGGACTCTTAAATCTGGTTCTGTTGAGAAAGTCTCGAAAGTGC 598
Query 555 ATGATCAGTATCTGGAGTTTGTGACTTTGGAAGATAACTTGTTCTCTCTGGCTCAGCAAT 614
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 599 ATGATCAGTATCTGGAGTTTGTGACTTTGGAAGATAACTTGTTCTCGCTGGCTCAGCAAT 658
Query 615 CTACTTATGTTCAAATGAATGATCCATCAGCCGGGGATAAAGAGATCGAA-GAGATAATC 673
|||| ||||||||||||||||| |||||||| ||||| |||||||| || ||||| |||
Sbjct 659 CTACCTATGTTCAAATGAATGACCCATCAGCAGGGGAGAAAGAGAT-TAATGAGATTATC 717
Query 674 GAAAGGGTTGCTAGTGGTTTGTTTTGTGTCTTGGTAACGCTCGGTGTTGTCCCTGTTATC 733
|||||||| |||||||||||||||||||| ||||||||||| ||||| || |||||||||
Sbjct 718 GAAAGGGTCGCTAGTGGTTTGTTTTGTGTGTTGGTAACGCTTGGTGTGGTTCCTGTTATC 777
Query 734 CGGTGTCCTCGTGGTGGACCGGCAGAGATGGTGGCTTCTTTGTTGGATCAGAAACTGAGG 793
|| || ||| |||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 778 CGATGCCCTAGTGGTGGACCTGCAGAGATGGTGGCGTCTTTGTTGGATCAGAAACTGAGG 837
Query 794 GATCATCTTTTGTCCAAGAACAATCTGTTTACTGAAGGTGGCGGTTTCATGAGCTCGTTT 853
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 838 GATCATCTTTTGTCCAAGAACAATCTGTTTACTGAAGGTGGCGGTTTCATGAGCTCGTTT 897
Query 854 CAGCGTCCGCTCTTGTGCAT-TTTCGATAGGAATTTTGAGCTCTCGGTTGGGATTCAGCA 912
|||||||| ||||||||||| ||| |||||||| ||||||||||||||||||||||||||
Sbjct 898 CAGCGTCCCCTCTTGTGCATATTT-GATAGGAACTTTGAGCTCTCGGTTGGGATTCAGCA 956
Query 913 TGATTTCAGATACCGGCCTCTTGTTCATGACGTTCTCGACTTAAAGCTCAACCGATTGAC 972
||||||||||||||||||||| ||||| || ||||||| ||||||||||||| |||||
Sbjct 957 TGATTTCAGATACCGGCCTCTCGTTCACGATGTTCTCGGGTTAAAGCTCAACCAATTGAA 1016
Query 973 CGTGCAGGCAGAGAAAGGAGGAAAGAAATCGTTTGATCTGGACAGTGCTGACCCATTCTG 1032
||||||| |||||||||| | |||||||||||| ||||||||| | |||||||||||
Sbjct 1017 AGTGCAGGGAGAGAAAGGACCACCGAAATCGTTTGAGCTGGACAGTTCGGACCCATTCTG 1076
Query 1033 GTCAGCAAACAGTTCTCTGGAGTTTCCAGAAGTCGCTGTGGAGATTGAAACGCAGTTGAA 1092
||||||||||||| |||||||||||||||| |||||||||||||| ||||| ||||||||
Sbjct 1077 GTCAGCAAACAGTACTCTGGAGTTTCCAGATGTCGCTGTGGAGATCGAAACACAGTTGAA 1136
Query 1093 CAAGTACAAGAGAGACGTGGAGGAGGTTAACAAGAGAACCGGCGGTGGGAGTGGCACTGA 1152
|||||||||||||||||| || ||||||||||||| |||||| |||||||| ||| ||||
Sbjct 1137 CAAGTACAAGAGAGACGTTGAAGAGGTTAACAAGAAAACCGGAGGTGGGAGCGGCGCTGA 1196
Query 1153 GTTTGATGGGACAGATCTGATCGGAAACA-CCA-A---A-CATCTCATGGACGCTGTGAA 1206
||||||||||||||||||||| ||||||| ||| | | ||||||||| || |||||||
Sbjct 1197 GTTTGATGGGACAGATCTGATTGGAAACATCCACACCGAGCATCTCATGAACACTGTGAA 1256
Query 1207 TTCGCTCCCGGAATTAACTGAGAGAAAGCAAGTGATTGACAAACACACCAACATTGCAAC 1266
||||||||||| ||||||||| ||||| |||||||||||||||||||||| || |||||
Sbjct 1257 ATCGCTCCCGGAGTTAACTGAGCGAAAGAAAGTGATTGACAAACACACCAATATCGCAAC 1316
Query 1267 CGCGCTCCTAGGACAGATCAAGGAGAGATCTATCGACGCTTTCACTAAGAAAGAAAGCGA 1326
|||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1317 AGCGCTCTTAGGACAGATCAAGGAGAGATCTATTGACGCTTTCACTAAGAAAGAAAGCGA 1376
Query 1327 GATGATGATGAGAGGTGGAATCGACAGAGCTGAACTTATGGCTACTCTAAAAGGCAAAGG 1386
||||||||||| || |||||||||||| |||||||||||||| |||| |||||||||||
Sbjct 1377 CATGATGATGAGGGGCGGAATCGACAGAACTGAACTTATGGCTGCTCTGAAAGGCAAAGG 1436
Query 1387 TACAAAGATGGACAAGCTCCGGTTTGCAATCATGTACTTGATTTCCACAGAGACCATAAA 1446
|||||||||||||||||||||||||||||||||||| |||| |||||||| ||||||||
Sbjct 1437 GACAAAGATGGACAAGCTCCGGTTTGCAATCATGTACCTGATCTCCACAGAAACCATAAA 1496
Query 1447 CCAATCCGAAGTGGAATCCGTGGAAGCAGCATTGAACGAAGCCGAGGCTGACACAAGCGC 1506
|||||| ||||| ||| | ||||| ||||||||||| ||||| |||||||| ||||| ||
Sbjct 1497 CCAATCGGAAGTTGAAGCAGTGGAGGCAGCATTGAATGAAGCTGAGGCTGATACAAGTGC 1556
Query 1507 GTTTCAGTACGTGAAGAAAATCAAATCCTTAAACGTATCTCTTGCAGCTTCTTCAGCGAA 1566
||||||||| || |||||||||||||| ||||||| |||| |||||||| | ||||||||
Sbjct 1557 GTTTCAGTATGTAAAGAAAATCAAATCGTTAAACGCATCTTTTGCAGCTACATCAGCGAA 1616
Query 1567 CTCAGCGAGTAGAAGCAACATTGTAGACTGGGCCGAGAAGCTTTACGGACAGTCTATAAG 1626
||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1617 TTCAGCTAGCAGAAGCAACATTGTAGACTGGGCCGAGAAGCTTTACGGACAGTCTATAAG 1676
Query 1627 CGCAGTCACTGCAGGAGTGAAGAATCTGTTATCTAGTGATCAACAATTGGCAGTGACTCG 1686
|||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1677 CGCAGTGACTGCAGGAGTCAAGAATCTGTTATCTAGTGATCAACAATTGGCAGTGACTCG 1736
Query 1687 AACCGTTGAAGCTTTAACAGAAGGAAAACCAAACCCAGAGATTGACTCTTACCTCTTCCT 1746
||| || ||||||||||||||||||||||||||||| ||||| || ||||||| ||||||
Sbjct 1737 AACAGTCGAAGCTTTAACAGAAGGAAAACCAAACCCGGAGATCGATTCTTACCGCTTCCT 1796
Query 1747 GGACCCAAGAGCTCCAAAGTCTTCTAGCTCCGGTGGTAGCCACGTGAAGGGACCGTTTAG 1806
||||||||||||||||||||| |||||||||||||||||||| || || |||||||| ||
Sbjct 1797 GGACCCAAGAGCTCCAAAGTCGTCTAGCTCCGGTGGTAGCCATGTAAAAGGACCGTTCAG 1856
Query 1807 AGAAGCTATAGTGTTCATGATCGGTGGAGGTAACTATGTTGAGTACGGGAGTTTGCAGGA 1866
||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 1857 AGAAGCTATAGTGTTCATGATCGGTGGAGGTAACTATGTTGAGTATGGAAGTTTGCAGGA 1916
Query 1867 GCTGACTCAGAGACAGTTAACCGTTAAAAACGTTATATATGGAGCCACTGAGATTCTTAC 1926
| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1917 GTTGACTCAGAGACAGTTAACCGTTAAAAACGTTATTTATGGAGCCACTGAGATTCTTAA 1976
Query 1927 CGGAGGTGAATTGGTGGAACAGCTTGGACTTTTGGGAAAGAAGATGGGATTGGGAGGTCC 1986
||||||||| |||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 1977 CGGAGGTGAGTTGGTGGAGCAGCTTGGACTTTTGGGAAAGAAGATGGGATTAGGAGGTCC 2036
Query 1987 GGTCGCTTCAACGTCATCGTCTGGT---CACTGAGTGTTAGACACTGTTGctttcttttt 2043
||||||||||||||||| ||||||| |||||||||||| ||||||| ||||||||||
Sbjct 2037 GGTCGCTTCAACGTCATTGTCTGGTGGTCACTGAGTGTTACTCACTGTTACTTTCTTTTT 2096
Query 2044 ttcttttggcttttCAGAG 2062
| |||||||||||| ||||
Sbjct 2097 T-CTTTTGGCTTTTGAGAG 2114
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 102208309620
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5