BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489837
Length=1299
Score E
Sequences producing significant alignments: (Bits) Value
AT2G17990.1 | Symbols: | BEST Arabidopsis thaliana protein mat... 1099 0.0
> AT2G17990.1 | Symbols: | BEST Arabidopsis thaliana protein match
is: kinectin-related (TAIR:AT5G66250.3); Has 7578 Blast
hits to 6129 proteins in 783 species: Archae - 220; Bacteria
- 1045; Metazoa - 3605; Fungi - 575; Plants - 442; Viruses
- 38; Other Eukaryotes - 1653 (source: NCBI BLink). | chr2:7826817-7828754
FORWARD LENGTH=1424
Length=1424
Score = 1099 bits (595), Expect = 0.0
Identities = 713/766 (93%), Gaps = 23/766 (3%)
Strand=Plus/Plus
Query 514 GAACACTAGAAGGTACCA-TGGTTCCTTGGGTGTAGAGGATGGAGCCTATACTAATGAGA 572
||| ||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 628 GAA-ACTAGAAGGTA-CAGTGGTTCCTTGGGTGTAGAGGATGGAGCCTATACTAATGAGA 685
Query 573 TGCTCCAATCCATAGAAATGGTTACTGATGTGCTGGACTCTCTTGTGAGGAGGGTTACAG 632
||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 686 TGCTCCAGTCCATAGAGATGGTTACTGATGTGCTGGACTCTCTTGTGAGGAGGGTTACAG 745
Query 633 CAGCAGAATCTGAGACGGCTGTTCAAAAAGAGAAGGCACTTTTGGGCGAGGAAGAAATCA 692
||||||||||||| | ||||||||||| |||| |||||||||||| |||||||||||||
Sbjct 746 TAGCAGAATCTGAGTCTGCTGTTCAAAAGGAGAGGGCACTTTTGGGAGAGGAAGAAATCA 805
Query 693 GTAGGAAGAC-AGTCCAAATCGAGAATTTGTCC-TCGAAGTTAGAAGAAATGGAACGATT 750
|||||||||| | |||||||||| ||||||||| | |||||||||||| |||||||||||
Sbjct 806 GTAGGAAGACTA-TCCAAATCGAAAATTTGTCCGT-GAAGTTAGAAGAGATGGAACGATT 863
Query 751 TGCTCATGGGACTAATAGTGTTCTAAATGAAATGCGGGAAAGGATTGAGGAACTAGTTGA 810
|||| |||||||||||||||||||||| |||||||||||||||||||||||| |||||||
Sbjct 864 TGCTTATGGGACTAATAGTGTTCTAAACGAAATGCGGGAAAGGATTGAGGAATTAGTTGA 923
Query 811 AGAGACGATGAGACAAAGGGAAAAAGCTAAGGAAAACGAAGAGGAGCTGTGTCGTGTGAA 870
|||||||||||| || |||||||||||| |||||||||||||||| |||||||||||||
Sbjct 924 AGAGACGATGAGGCAGAGGGAAAAAGCTGTGGAAAACGAAGAGGAGTTGTGTCGTGTGAA 983
Query 871 GAGAGAGTTCGAGTCGCTTAAAAGCTATGTTAGTACTTTTACCAATG-TCAGAGAAACAC 929
||||||||||||||||||||||||||| || |||||||||||||||| || |||||||||
Sbjct 984 GAGAGAGTTCGAGTCGCTTAAAAGCTACGTCAGTACTTTTACCAATGTTC-GAGAAACAC 1042
Query 930 TTCTTTCATCCGAGAGACAATTCAAAACCATTGAGGAGCTCTTTGAAAGGTTGGTCACTA 989
||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1043 TTCTTTCGTCCGAGAGACAATTCAAAACCATTGAGGAGCTCTTTGAACGGTTGGTCACTA 1102
Query 990 AGACGACACAATTAGAAGGTGAGAAGGCACAAAAGGAGGTTGAAGTTCAGAAACTGATGG 1049
||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 1103 AGACGACACAATTAGAAGGGGAGAAGGCACAAAAGGAGGTTGAAGTACAGAAACTGATGG 1162
Query 1050 AGGAGAATGTGAAATTGACGGCACTTCTCGACAAGAAAGAGGCTCAGCTTCTAGCTTTGA 1109
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1163 AGGAGAATGTGAAATTGACAGCACTTCTCGACAAGAAAGAGGCTCAGCTTCTAGCTTTGA 1222
Query 1110 ATGAACAATGCAAAGTCATGGCTTTGAGTGCATCAAACATATGAA-TTTGCT--ATCTTT 1166
|||||||||||||||| |||||||||||||||||||||||||||| |||||| ||||||
Sbjct 1223 ATGAACAATGCAAAGTTATGGCTTTGAGTGCATCAAACATATGAAATTTGCTTTATCTTT 1282
Query 1167 GCATTGTTGTTGACTCATCTCTTATTGCCATCTTTCTATTCTTGAGACAAATGCTTTCGC 1226
|||||||||||| ||||||||||||| | ||| | |||||||||| |||||||||
Sbjct 1283 GCATTGTTGTTGGCTCATCTCTTATT----T-TTT-T---CTTGAGACAA-TGCTTTCGC 1332
Query 1227 AGAAGAAGATGA-TGCAATATTCTTCCTTCATTGTTCTTTGTTTCA 1271
||||| |||||| |||||| ||||||||||||||||||||| ||||
Sbjct 1333 AGAAGTAGATGAATGCAATCTTCTTCCTTCATTGTTCTTTGCTTCA 1378
Score = 486 bits (263), Expect = 2e-136
Identities = 336/371 (91%), Gaps = 5/371 (1%)
Strand=Plus/Plus
Query 115 CCTCTAATTCGTTCCTGA-AAATCTGGAATCGGCCGGAGCGAATCTCGAAGCTTATGATC 173
||||||||| | |||| | |||||||||||| ||||||||||||||||||||||||||||
Sbjct 168 CCTCTAATTTGCTCCT-ACAAATCTGGAATCAGCCGGAGCGAATCTCGAAGCTTATGATC 226
Query 174 TCGAGTTATTGAAGATGCTGGGGATGGCTGGTAGAGAGGATACTAATGTATCTGCAAAAG 233
|||| || |||||| |||||| |||||||||| |||||| ||| ||||||||||| |||
Sbjct 227 TCGACTTGCTGAAGAGGCTGGGAATGGCTGGTAAAGAGGAGACTGATGTATCTGCACAAG 286
Query 234 GGTCTTTAACCAGGGAAGCCACTGAGATATGGAAGAGTGAATTGGAATCTCGTCGGTTGC 293
|||||||||||||||| |||||||||||||||| |||||| ||||||||||| ||||| |
Sbjct 287 GGTCTTTAACCAGGGAGGCCACTGAGATATGGAGGAGTGAGTTGGAATCTCGCCGGTTTC 346
Query 294 AGATAGATAGTTTAGAAGCTGAACTTGTTGATGTCAATGCTTACCTTGAGTTTGGTTCAG 353
|| ||||||||||||||||||||||||| |||||||| ||||||||||||||||| ||||
Sbjct 347 AGGTAGATAGTTTAGAAGCTGAACTTGTGGATGTCAAGGCTTACCTTGAGTTTGGCTCAG 406
Query 354 AAGAAGATGCCAGAAAGGAATTAGGGGTTCTTTCGGGTAGGGTCAGATCGACTGCAACAA 413
||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| |
Sbjct 407 AAGAAGATGCCAGAAAGGAGTTAGGAGTTCTTTCGGGTAGGGTCAGATCGACTGCAACTA 466
Query 414 TGTTGCGCTATTTGAGATCAAAAGCTGGAAACTTGGCCATTCCTGAT---CTAGCGAATG 470
||||||| |||||||||||||||||| || |||||||||||||||| ||||| ||||
Sbjct 467 TGTTGCGTTATTTGAGATCAAAAGCTAGAGTCTTGGCCATTCCTGATGATCTAGCAAATG 526
Query 471 TGTCATCCGGT 481
|||||| ||||
Sbjct 527 TGTCATGCGGT 537
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63905293785
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5