BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489839
Length=1266
Score E
Sequences producing significant alignments: (Bits) Value
AT4G09900.1 | Symbols: ATMES12, MES12 | methyl esterase 12 | ch... 1700 0.0
AT1G33990.1 | Symbols: ATMES14, MES14 | methyl esterase 14 | ch... 1029 0.0
AT2G04230.1 | Symbols: | FBD, F-box and Leucine Rich Repeat do... 322 5e-87
> AT4G09900.1 | Symbols: ATMES12, MES12 | methyl esterase 12 |
chr4:6221664-6224134 REVERSE LENGTH=1363
Length=1363
Score = 1700 bits (920), Expect = 0.0
Identities = 1071/1145 (94%), Gaps = 6/1145 (1%)
Strand=Plus/Plus
Query 125 TTTTCTTGAATTTCCAATAAAATCCACTTCTGTGGGCTAAATTCAAGGATTTGT-AAAAA 183
||||||||| |||||| |||| ||||||||| ||||||||||||| || ||||| || ||
Sbjct 152 TTTTCTTGAGTTTCCATTAAAGTCCACTTCTTTGGGCTAAATTCAGGGTTTTGTGAAGAA 211
Query 184 TGGGTAACAGAGTAATCTGCATGAAGAAGAAAGATGTTGTTATCAGAAGTGGAGGAGATG 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 212 TGGGTAACAGAGTAATCTGCATGAAGAAGAAAGATGTTGTTATCAGAAGTGGAGGAGATG 271
Query 244 GATCCAGAAGCAAGAGAGTGAATTGTTCACAAAGGAAGTTGCTTGCTGATGAAGAGAATT 303
| ||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||
Sbjct 272 GGTCCAGAAGCAAGAGAGTGAATCGTTCACAGAGGAAGTTGCTTGCTGATGAAGAGAATT 331
Query 304 TGCATCGACA-AGCTTTGTCTATGGCTATTCATCAAGCTCAGGTTTCTCAGAGATTTGAT 362
|||||||| | |||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 332 TGCATCGA-AGAGCTTTGTCTATGGCTATTCATCAAGCTCAAGTTTCTCAGAGATTTGAT 390
Query 363 GGATCTATGTCTAGACGTATCGGGTCTACTAGCTCTAGAAGAGGAACACTCTCTGACCCA 422
||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| ||
Sbjct 391 GGATCCATGTCTAGACGAATCGGGTCTACTAGCTCTAGAAGAGGAACACTCTCTGACTCA 450
Query 423 TTTGCTAATAACAAACAGGTACCTGAGTTTTTGGAGGGCTTGAAGGTTAAGAAATTCGTT 482
||| |||||||||| ||||| ||||||||||||||| |||||||||||||||||||||||
Sbjct 451 TTTTCTAATAACAAGCAGGTTCCTGAGTTTTTGGAGAGCTTGAAGGTTAAGAAATTCGTT 510
Query 483 TTGGTTCATGGTGAAGGGTTTGGGGCATGGTGTTGGTACAAAAATATTGCTTTATTGGAA 542
||||| ||||||||||||||||||||||||||||||||||||| |||||| | ||||||
Sbjct 511 TTGGTGCATGGTGAAGGGTTTGGGGCATGGTGTTGGTACAAAACTATTGCGTCATTGGAG 570
Query 543 GAGTCTGGACTATATCCTGTTACAGTTGATCTGGCTGGTTCTGGATTTAATATGACTGAC 602
||||||||||| | ||||||||| ||||| || ||||| ||||||||||||||||| |||
Sbjct 571 GAGTCTGGACTGTCTCCTGTTACGGTTGACCTCGCTGGATCTGGATTTAATATGACAGAC 630
Query 603 GCCAATAGCGTTTCCACGTTAGAAGAATATTCAAAACCGTTGATCGAGCTCCTTCAAAAT 662
|| ||||| |||||||| ||||||||||||||||||||||||||||||||| ||||||||
Sbjct 631 GCAAATAGTGTTTCCACCTTAGAAGAATATTCAAAACCGTTGATCGAGCTCATTCAAAAT 690
Query 663 CTTCCCGAGGAAGAAAAGGTTATTCTGGTGGGTCACAGTACTGGAGGTGCATGTGTTTCC 722
||||| | ||||||||||| |||||||| ||||||||||||||||| |||||||||||
Sbjct 691 CTTCCTGCTGAAGAAAAGGTGATTCTGGTAGGTCACAGTACTGGAGGGGCATGTGTTTCA 750
Query 723 TATGCGTTAGAGCGGTATCCAGAGAAAATCTCAAAAGCTATATTCATATGTGCAACTATG 782
|||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||
Sbjct 751 TATGCGTTAGAGCGGTTTCCAGAGAAAATCTCAAAAGCTATATTCATTTGTGCAACTATG 810
Query 783 GTTACTGATGGACAAAGACCCTTTGATGTCTTTGCTGATGAGCTTGGTTCTGCAGAACGG 842
||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 811 GTTACTGATGGACAAAGACCCTTCGATGTCTTCGCTGATGAGCTTGGTTCTGCAGAACGG 870
Query 843 TTCATGAAAGAGTCGCAGTTCTTGATCTATGGGAACGGCAAAGACAAGCCCGCTACGGGG 902
|||||||||||||| ||||||||||||||||| |||||||| ||||| ||||| || |||
Sbjct 871 TTCATGAAAGAGTCACAGTTCTTGATCTATGGAAACGGCAAGGACAACCCCGCGACAGGG 930
Query 903 TTCATGTTTGAGAAACAACACATGAAAGGCTTGTACTTCAATCAGTCACCCAATAAGGAC 962
|||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 931 TTCATGTTCGAGAAACAACACATGAAAGGCTTGTACTTCAATCAGTCACCAAATAAGGAC 990
Query 963 ATTGCATTGTCGACGATATCGATGCGACCTGTACCATTAGGTCCCATGATGGAGAAGCTG 1022
||||||||||| | ||| |||||||| |||||||||||||||||||||||||||||| ||
Sbjct 991 ATTGCATTGTCAATGATCTCGATGCGGCCTGTACCATTAGGTCCCATGATGGAGAAGTTG 1050
Query 1023 TCGCTTAGTGCAGAAAGGTATGGGAAAGGTCGAAGATTCTATGTTCAGACGCTCGATGAC 1082
|| |||||||||||||| |||||||||||||| ||||||||||| |||||||||||||||
Sbjct 1051 TCACTTAGTGCAGAAAGATATGGGAAAGGTCGGAGATTCTATGTCCAGACGCTCGATGAC 1110
Query 1083 TTGGCTCTTTCACCGGACGTTCAAGAGAAACTGGT-CAGAGAGAATAGTCCTGAAGCAGT 1141
||||||||||||||||||||||||||||||||||| | ||||||||||||| ||||||||
Sbjct 1111 TTGGCTCTTTCACCGGACGTTCAAGAGAAACTGGTTC-GAGAGAATAGTCCCGAAGCAGT 1169
Query 1142 TTTTAAGATCAAAGGAAGTGATCATTGCCCTTTCTTCTCTAAACCTCAGTCTCTTCACAA 1201
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1170 TTTTAAGATCAAAGGAAGTGATCATTGCCCATTCTTCTCTAAACCTCAGTCTCTTCACAA 1229
Query 1202 GATCCTTCTTGAGATAGCTCAGATTCCTTAAAAAGACACAAATCTTGAATTCAGAATGTA 1261
|||||||||||| ||||| ||||||||||||||| | | |||||||||||||||||||||
Sbjct 1230 GATCCTTCTTGAAATAGCACAGATTCCTTAAAAATAGA-AAATCTTGAATTCAGAATGTA 1288
Query 1262 TAATA 1266
|||||
Sbjct 1289 TAATA 1293
Score = 148 bits (80), Expect = 1e-34
Identities = 114/129 (88%), Gaps = 7/129 (5%)
Strand=Plus/Plus
Query 1 GAAACAATTAACATTCTTTGGCTGCTTTGTCTTAAATCTGAATCGTCCTTATTCTTCCTA 60
||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1 GAAACAATTAACAAACTTTGGCTGCTTTGTCTTAAATCTGAATCGTCCTTATTCATCCTA 60
Query 61 ATTAATGACACCATTTTGCTTCTTCTTCCTCTACCTCTCCTCTCTATCCCCAAGTCAAGA 120
|| ||||||||| |||| |||||||||| | | | | || |||||||| ||||||||||
Sbjct 61 ATCAATGACACCGTTTTACTTCTTCTTC-T-T-C-T-TC-TCTCTATCATCAAGTCAAGA 114
Query 121 TCTTTTTTC 129
| |||||||
Sbjct 115 T-TTTTTTC 122
> AT1G33990.1 | Symbols: ATMES14, MES14 | methyl esterase 14 |
chr1:12355568-12358031 FORWARD LENGTH=1525
Length=1525
Score = 1029 bits (557), Expect = 0.0
Identities = 916/1085 (84%), Gaps = 42/1085 (4%)
Strand=Plus/Plus
Query 172 GATTTGTAAAAATGGGTAAC-AGAGTAATCTGC-ATGAAGAAGAAAGATGTTGTTATCAG 229
|||||| ||| ||||||||| ||| |||||| | |||| ||||||||| | | | ||
Sbjct 331 GATTTGGAAAGATGGGTAACAAGA-TAATCT-CAATGATGAAGAAAGA--TAG-CA-AAG 384
Query 230 A-AGTGGAGGA-GATGGATC-CAGAAGCAAGAGAGTGAATTGTTCACAAAGGAAGTTGCT 286
| | |||||| || ||||| || ||||||||| ||||| | || || ||||| || ||
Sbjct 385 ATGGAGGAGGAGGA-GGATCTAAG-AGCAAGAGAATGAATCGGTCTCAGAGGAAATTACT 442
Query 287 TGCTGATGAAGAGAAT-TTGCATCGACAAGCT-TTGTCTATGGCTATTCATCAAGCTCAG 344
||||||||||||| || |||||||| | |||| || || ||||| |||||||||||||||
Sbjct 443 TGCTGATGAAGAG-ATGTTGCATCGTCGAGCTCTT-TCCATGGCGATTCATCAAGCTCAG 500
Query 345 GTTTCTCAGAGATTTGATGGATCTATGTCTAGACGTATCGGGTCTACTAGCT-CTAG-AA 402
|||||||||||||||||||||||||||||||||| ||||||||||||| | |||| ||
Sbjct 501 CTTTCTCAGAGATTTGATGGATCTATGTCTAGACGGGTCGGGTCTACTAG-TACTAGGAA 559
Query 403 GAGGAACACTCTCTGACCCATTTGCTAATAACAAACAGGTACCTGAGTTTTTG-GAGGGC 461
| | || ||||||||||| ||| ||||| ||| ||||||||||| ||||| ||| ||
Sbjct 560 -ACGTACTCTCTCTGACCCGTTTTCTAATGGCAAGCAGGTACCTGA-TTTTTCAGAGAGC 617
Query 462 TTGA-AGGTTAAGAAATTCGTTTTGGTTCATGGTGAAGGGTTTGGGGCATGGTGTTGGTA 520
|||| || | |||||||| ||| |||| || |||||||| ||||||||||||||||||||
Sbjct 618 TTGATAG-TGAAGAAATTTGTTCTGGTGCACGGTGAAGGATTTGGGGCATGGTGTTGGTA 676
Query 521 CAAAAATA-TTGCTTTATTGGAAGAGTCTGGACTATATCCTGTTACAGTTGATCTGGCTG 579
||||| | |||||| |||||||||||| ||||| | ||||||||||||||| || |||
Sbjct 677 CAAAA-TGGTTGCTTCATTGGAAGAGTCAGGACTGTCTCCTGTTACAGTTGACCTCACTG 735
Query 580 GTTCTGGATTTAATATGACTGACGCCAATAGC-GTTTCCACGTTAGAAGAATATTCAAAA 638
| | ||||||||||||||||||| | |||| | || || || || || ||||||||||||
Sbjct 736 GGTGTGGATTTAATATGACTGACACAAATA-CTGTCTCTACCTTGGAGGAATATTCAAAA 794
Query 639 CCGTTGATCGAGCTCCTTC-AAAATCTTCCCGAGGAAGAAAAGGTTATTCTGGTGGGTCA 697
||||||||||| ||||| | ||||||| ||||| ||||| ||||||||||| ||||||||
Sbjct 795 CCGTTGATCGATCTCCT-CGAAAATCTCCCCGAAGAAGAGAAGGTTATTCTAGTGGGTCA 853
Query 698 CAGTACTGGAGGTGCATGTGTTTCCTATGCGTTAGAGCGGTATCCAGAGAAAATCTCAAA 757
||||||||||||||| | |||| |||||||||||| ||| ||||||||||||||| ||
Sbjct 854 CAGTACTGGAGGTGCTTCCATTTCATATGCGTTAGAGAGGTTTCCAGAGAAAATCTCTAA 913
Query 758 AGCTATATTCATATGTGCAACTATGGTTACTGATGGACAAAGACCCTTTGATGTCTT-TG 816
|||||||||| |||||||||| |||||| ||||||| |||||||| |||||||| || |
Sbjct 914 AGCTATATTCGTATGTGCAACAATGGTTTCTGATGGCCAAAGACCTTTTGATGTTTTCT- 972
Query 817 CTGATGAGCTTGGTTCTGCAGAACGGTTCATGAAAGAGTCGCAGTTCTTGATCTATGGGA 876
|||| ||||||||||| ||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 973 CTGAAGAGCTTGGTTCCGCAGAGCGGTTCATGAAAGAGTCGCAGTTCTTGATTTATGGGA 1032
Query 877 ACGGCAAAGACAAGCC-CGCTACGGGGTTCATGTTTGAGAAACAACACATGAAAGGCTTG 935
|||| ||||||||||| | |||||||||||||||||||||| | ||| ||||||||||||
Sbjct 1033 ACGGTAAAGACAAGCCTC-CTACGGGGTTCATGTTTGAGAAGCCACATATGAAAGGCTTG 1091
Query 936 TACTTCAATCAGTCACCCAATAAGGACATTGCATTGTCGACGATATCGATGCGACCTGTA 995
|| |||||||| |||||||| ||||| || |||||| ||| ||| || ||| ||||||||
Sbjct 1092 TATTTCAATCAATCACCCAACAAGGATATAGCATTGGCGATGATCTCAATGAGACCTGTA 1151
Query 996 CCATTAGGTCCCATGATGGAGAA-GCTGTCGCTTAGTGCAGAAAGGTATGGGAAAGGTCG 1054
||| | || || ||||||||||| | | || || | |||||||| ||||||||||| |
Sbjct 1152 CCACTCGGACCAATGATGGAGAAAG-TATCTCTAACCGCAGAAAGATATGGGAAAGGGAG 1210
Query 1055 AAGATTCTATGTTCAGACGCTCGATGACT-TGGCTCTTTCACCGGACGTTCAAGAGAAAC 1113
||||||||| || |||||||| |||||| || | |||||||| || |||||||||||
Sbjct 1211 AAGATTCTACGTCCAGACGCTAGATGACCGTG-CACTTTCACCAGATGTTCAAGAGAAGT 1269
Query 1114 TGGTCAGAGAGAATAGTCCTGAAGCAGTTTTTAAGATCAAAGGAAGTGATCATTGCCCTT 1173
| || |||||||| || ||||||| ||| || ||||||||||||||||||||||||||||
Sbjct 1270 TAGTGAGAGAGAACAGCCCTGAAGGAGTCTTCAAGATCAAAGGAAGTGATCATTGCCCTT 1329
Query 1174 TCTTCTCTAAA-CCTCAGTCTCTTCACAAGATCCTTCTTGAGATAGCTCAGATTCCTTAA 1232
||||||| ||| ||||| ||||| ||||| |||||||| ||||| || ||||||||||||
Sbjct 1330 TCTTCTC-AAAGCCTCAATCTCTCCACAAAATCCTTCTGGAGATTGCACAGATTCCTTAA 1388
Query 1233 -AAAG 1236
||||
Sbjct 1389 CAAAG 1393
> AT2G04230.1 | Symbols: | FBD, F-box and Leucine Rich Repeat
domains containing protein | chr2:1446864-1449100 REVERSE LENGTH=1930
Length=1930
Score = 322 bits (174), Expect = 5e-87
Identities = 206/221 (93%), Gaps = 3/221 (1%)
Strand=Plus/Minus
Query 157 TGGGCTAAATTCAAGGATTTGT-AAAAATGGGTAACAGAGTAATCTGCATGAAGAAGAAA 215
||||| ||||||| || ||||| || ||||||||||||||||||||||||||||||||||
Sbjct 314 TGGGCAAAATTCAGGGTTTTGTGAATAATGGGTAACAGAGTAATCTGCATGAAGAAGAAA 255
Query 216 GATGTTGTTATCAGAAGTGGAGGAGATGGATCCAGAAGCAAGAGAGTGAATTGTTCACAA 275
||||||||||||||||||||||||||| ||||||||||||||||| ||||| |||||||
Sbjct 254 GATGTTGTTATCAGAAGTGGAGGAGATTGATCCAGAAGCAAGAGAATGAATCGTTCACAG 195
Query 276 AGGAAGTTGCTTGCTGATGAAGAGAATTTGCATCGACA-AGCTTTGTCTATGGCTATTCA 334
||||||||| |||||| ||||||||||||||||||| | |||||||||||||||||||||
Sbjct 194 AGGAAGTTGATTGCTGTTGAAGAGAATTTGCATCGA-AGAGCTTTGTCTATGGCTATTCA 136
Query 335 TCAAGCTCAGGTTTCTCAGAGATTTGATGGATCTATGTCTA 375
|||||||||||| |||||||||||||||||||| |||||||
Sbjct 135 TCAAGCTCAGGTGTCTCAGAGATTTGATGGATCCATGTCTA 95
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62248675800
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5