BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg489841 Length=1133 Score E Sequences producing significant alignments: (Bits) Value AT4G09960.3 | Symbols: STK, AGL11 | K-box region and MADS-box t... 1639 0.0 AT3G58780.3 | Symbols: SHP1 | K-box region and MADS-box transcr... 180 3e-44 > AT4G09960.3 | Symbols: STK, AGL11 | K-box region and MADS-box transcription factor family protein | chr4:6236473-6240681 REVERSE LENGTH=1198 Length=1198 Score = 1639 bits (887), Expect = 0.0 Identities = 1064/1146 (93%), Gaps = 25/1146 (2%) Strand=Plus/Plus Query 1 ATCAAGTTCCCATCTTTGTACACATCTCTTCATTCAAAAACTCTACATTTATATCTCTCT 60 ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 1 ATCAAGTTCCCATCTTTGTACACATCTCTTCATTCAAAAACTCTACATTTATA--TCTCT 58 Query 61 ATATATGCAGATTCCAAGCTTATAATAATTCTTGTCAGCATGGG-TTTTTTCTTTG-CTT 118 ||||||||||||||||||||| ||||||||||||||| |||||| ||||||| ||| ||| Sbjct 59 ATATATGCAGATTCCAAGCTTGTAATAATTCTTGTCATCATGGGTTTTTTTC-TTGCCTT 117 Query 119 GTCTCTTCACAAAACTTAATTTTCACAATTATGAAATATTTTCCCTT-TTTATGATCT-C 176 |||||| || ||||||||||||||||||||||||| |||||| |||| ||| || | | | Sbjct 118 GTCTCTCCAGAAAACTTAATTTTCACAATTATGAATTATTTT-CCTTATTTTTG-T-TAC 174 Query 177 TTCCGTC-GTTTGATGCTCTTTCCCCATGAAAGAAAGAGAGACAAAGAAAGATCACCA-- 233 || | || |||||||||||||||||||||||||||||| ||| ||||||||||||| | Sbjct 175 TTTCTTCTGTTTGATGCTCTTTCCCCATGAAAGAAAGAAAGAGAAAGAAAGATCACAAGG 234 Query 234 GATTAATGTTGTTTGATGTTTTTAA-AATGAAGGATGGGAAGAGGAAAGATAGAAATAAA 292 | || || ||| | | |||| ||| ||||||||||||||||||||||||||||| Sbjct 235 GTTTTAT-TTG-GTCACCAGATTAAGAAT-TAGGATGGGAAGAGGAAAGATAGAAATAAA 291 Query 293 GAGGATAGAGAACTCAACAAATCGACAAGTGACGTTTTGCAAAAGAAGAAATGGACTTCT 352 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 292 GAGGATAGAGAACTCAACAAATCGACAAGTGACGTTTTGCAAAAGAAGAAATGGACTTCT 351 Query 353 GAAGAAAGCCTATGAGCTTTCGGTCCTTTGCGATGCAGAAGTTGCGCTCATTGTCTTCTC 412 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 352 GAAGAAAGCCTATGAGCTTTCGGTCCTTTGCGATGCAGAAGTTGCGCTCATTGTTTTCTC 411 Query 413 CACTCGTGGCCGTCTCTATGAGTACGCCAATAACAACATAAGATCAACCATTGAGAGATA 472 ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || Sbjct 412 CACTCGTGGCCGTCTCTATGAATACGCCAATAACAACATAAGATCAACCATTGAGAGGTA 471 Query 473 CAAGAAAGCTTGTTCTGATAGCACCAACACCAGCACTGTCCAAGAAATCAATGCCGCGTA 532 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 472 CAAGAAAGCTTGTTCTGATAGCACCAACACTAGCACTGTCCAAGAAATCAATGCCGCGTA 531 Query 533 CTATCAACAAGAATCTGCAAAGCTGAGACAACAGATCCAAACAATTCAAAACTCCAACAG 592 |||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| Sbjct 532 CTATCAACAAGAATCTGCTAAGCTGAGACAACAGATCCAAACGATTCAAAACTCCAACAG 591 Query 593 GAATCTGATGGGAGAATCTTTGAGTTCCCTAAGTGTCAAGGAACTAAAACAAGTTGAGAA 652 ||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| Sbjct 592 GAATCTGATGGGAGACTCTTTGAGTTCCTTAAGTGTCAAGGAACTAAAACAAGTTGAGAA 651 Query 653 TCGCCTTGAGAAAGCTATCTCCAGGATCAGGTCCAAGAAGCATGAGTTGCTTCTAGTTGA 712 ||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| Sbjct 652 TCGCCTTGAGAAAGCTATCTCTAGGATCAGGTCCAAGAAGCATGAGTTGCTTTTAGTTGA 711 Query 713 AATCGAAAACGCGCAGAAAAGGGAGATTGAGCTTGATAATGAGAATATCTATCTACGAAC 772 |||||||||||||||||||||||||||||||||||| |||||||| ||||||||| |||| Sbjct 712 AATCGAAAACGCGCAGAAAAGGGAGATTGAGCTTGACAATGAGAACATCTATCTAAGAAC 771 Query 773 TAAGGTAGCAGAAGTGGAGAGGTATCAACAACACCATCATCAAATGGTTAGTGGTTCAGA 832 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 772 TAAGGTAGCAGAAGTGGAGAGGTATCAACAACACCATCATCAAATGGTTAGTGGTTCAGA 831 Query 833 GATCACCGCCATCGAAGCTTTAGCCTCACGCAATTACTTTGCTCATAGTATTATGACTGC 892 ||| | || || ||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 832 GATTAATGCAATTGAAGCTTTAGCCTCACGCAATTACTTTGCTCATAGCATTATGACTGC 891 Query 893 TGGTTCTGGTTCTGGTAATGGAGGTTCTTACTCTGACCCCGACAAGAAAATCCTTCATCT 952 ||||||||| |||||||||||||||||||||||||| |||||||||||||| |||||||| Sbjct 892 TGGTTCTGGATCTGGTAATGGAGGTTCTTACTCTGATCCCGACAAGAAAATTCTTCATCT 951 Query 953 CGGTTAATCTCGTGGGTGAAAATC-GAGCTGCAATAACGCTCTGCAT-C-T--GGGGATT 1007 ||| ||||||||| | ||||| | ||||||||||||| |||||||| | | ||||||| Sbjct 952 CGGATAATCTCGTCTGCGAAAAACCGAGCTGCAATAACTCTCTGCATGCATCTGGGGATT 1011 Query 1008 CTCTACTCAGATTTATCTCTACATAAAATATGTTTTGGTTTATGATAATAATTCAAAGTA 1067 || | |||||||||||||||||||||||||||||||||| | | |||||||||||||| Sbjct 1012 CTTTGCTCAGATTTATCTCTACATAAAATATGTTTTGGTGCA--A-AATAATTCAAAGTA 1068 Query 1068 CAATGAAGGTATTGATCCTTCAAGACTCATTGGAAATTGTGTTGTGTAATGATGAAGACA 1127 |||||||||||||| ||||||||||||||||| || ||||||||||||||||| |||||| Sbjct 1069 CAATGAAGGTATTGGTCCTTCAAGACTCATTGCAATTTGTGTTGTGTAATGATTAAGACA 1128 Query 1128 TACTCT 1133 |||||| Sbjct 1129 TACTCT 1134 > AT3G58780.3 | Symbols: SHP1 | K-box region and MADS-box transcription factor family protein | chr3:21738460-21742517 FORWARD LENGTH=1894 Length=1894 Score = 180 bits (97), Expect = 3e-44 Identities = 155/182 (85%), Gaps = 7/182 (4%) Strand=Plus/Plus Query 269 GGGAAGA-GGAAAGATAGAAATAAAGAGGATAGAGAACTCAACAAATCGACAAGTGACGT 327 ||| ||| ||||| ||||| |||||||||||||||||| |||||||||| ||||| || | Sbjct 370 GGG-AGAGGGAAA-ATAGAGATAAAGAGGATAGAGAACACAACAAATCGTCAAGTTAC-T 426 Query 328 TT-TGCAAAAGAAGAAATGGACTTCTGAAGAAAGCCTATGAGCTTTCGGTCCTT-TGCGA 385 || |||||| || | ||||| ||||| |||||||| ||||| || || || ||| || || Sbjct 427 TTCTGCAAACGACGCAATGGTCTTCTCAAGAAAGCTTATGAACTCTCTGT-CTTGTGTGA 485 Query 386 TGCAGAAGTTGCGCTCATTGTCTTCTCCACTCGTGGCCGTCTCTATGAGTACGCCAATAA 445 ||| |||||||| ||| | ||||||||||||||||||||||||||||||||||||| || Sbjct 486 TGCCGAAGTTGCCCTCGTCATCTTCTCCACTCGTGGCCGTCTCTATGAGTACGCCAACAA 545 Query 446 CA 447 || Sbjct 546 CA 547 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 55572003315 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5