BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489841
Length=1133
Score E
Sequences producing significant alignments: (Bits) Value
AT4G09960.3 | Symbols: STK, AGL11 | K-box region and MADS-box t... 1639 0.0
AT3G58780.3 | Symbols: SHP1 | K-box region and MADS-box transcr... 180 3e-44
> AT4G09960.3 | Symbols: STK, AGL11 | K-box region and MADS-box
transcription factor family protein | chr4:6236473-6240681
REVERSE LENGTH=1198
Length=1198
Score = 1639 bits (887), Expect = 0.0
Identities = 1064/1146 (93%), Gaps = 25/1146 (2%)
Strand=Plus/Plus
Query 1 ATCAAGTTCCCATCTTTGTACACATCTCTTCATTCAAAAACTCTACATTTATATCTCTCT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1 ATCAAGTTCCCATCTTTGTACACATCTCTTCATTCAAAAACTCTACATTTATA--TCTCT 58
Query 61 ATATATGCAGATTCCAAGCTTATAATAATTCTTGTCAGCATGGG-TTTTTTCTTTG-CTT 118
||||||||||||||||||||| ||||||||||||||| |||||| ||||||| ||| |||
Sbjct 59 ATATATGCAGATTCCAAGCTTGTAATAATTCTTGTCATCATGGGTTTTTTTC-TTGCCTT 117
Query 119 GTCTCTTCACAAAACTTAATTTTCACAATTATGAAATATTTTCCCTT-TTTATGATCT-C 176
|||||| || ||||||||||||||||||||||||| |||||| |||| ||| || | | |
Sbjct 118 GTCTCTCCAGAAAACTTAATTTTCACAATTATGAATTATTTT-CCTTATTTTTG-T-TAC 174
Query 177 TTCCGTC-GTTTGATGCTCTTTCCCCATGAAAGAAAGAGAGACAAAGAAAGATCACCA-- 233
|| | || |||||||||||||||||||||||||||||| ||| ||||||||||||| |
Sbjct 175 TTTCTTCTGTTTGATGCTCTTTCCCCATGAAAGAAAGAAAGAGAAAGAAAGATCACAAGG 234
Query 234 GATTAATGTTGTTTGATGTTTTTAA-AATGAAGGATGGGAAGAGGAAAGATAGAAATAAA 292
| || || ||| | | |||| ||| |||||||||||||||||||||||||||||
Sbjct 235 GTTTTAT-TTG-GTCACCAGATTAAGAAT-TAGGATGGGAAGAGGAAAGATAGAAATAAA 291
Query 293 GAGGATAGAGAACTCAACAAATCGACAAGTGACGTTTTGCAAAAGAAGAAATGGACTTCT 352
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 292 GAGGATAGAGAACTCAACAAATCGACAAGTGACGTTTTGCAAAAGAAGAAATGGACTTCT 351
Query 353 GAAGAAAGCCTATGAGCTTTCGGTCCTTTGCGATGCAGAAGTTGCGCTCATTGTCTTCTC 412
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 352 GAAGAAAGCCTATGAGCTTTCGGTCCTTTGCGATGCAGAAGTTGCGCTCATTGTTTTCTC 411
Query 413 CACTCGTGGCCGTCTCTATGAGTACGCCAATAACAACATAAGATCAACCATTGAGAGATA 472
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 412 CACTCGTGGCCGTCTCTATGAATACGCCAATAACAACATAAGATCAACCATTGAGAGGTA 471
Query 473 CAAGAAAGCTTGTTCTGATAGCACCAACACCAGCACTGTCCAAGAAATCAATGCCGCGTA 532
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 472 CAAGAAAGCTTGTTCTGATAGCACCAACACTAGCACTGTCCAAGAAATCAATGCCGCGTA 531
Query 533 CTATCAACAAGAATCTGCAAAGCTGAGACAACAGATCCAAACAATTCAAAACTCCAACAG 592
|||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 532 CTATCAACAAGAATCTGCTAAGCTGAGACAACAGATCCAAACGATTCAAAACTCCAACAG 591
Query 593 GAATCTGATGGGAGAATCTTTGAGTTCCCTAAGTGTCAAGGAACTAAAACAAGTTGAGAA 652
||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||
Sbjct 592 GAATCTGATGGGAGACTCTTTGAGTTCCTTAAGTGTCAAGGAACTAAAACAAGTTGAGAA 651
Query 653 TCGCCTTGAGAAAGCTATCTCCAGGATCAGGTCCAAGAAGCATGAGTTGCTTCTAGTTGA 712
||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||
Sbjct 652 TCGCCTTGAGAAAGCTATCTCTAGGATCAGGTCCAAGAAGCATGAGTTGCTTTTAGTTGA 711
Query 713 AATCGAAAACGCGCAGAAAAGGGAGATTGAGCTTGATAATGAGAATATCTATCTACGAAC 772
|||||||||||||||||||||||||||||||||||| |||||||| ||||||||| ||||
Sbjct 712 AATCGAAAACGCGCAGAAAAGGGAGATTGAGCTTGACAATGAGAACATCTATCTAAGAAC 771
Query 773 TAAGGTAGCAGAAGTGGAGAGGTATCAACAACACCATCATCAAATGGTTAGTGGTTCAGA 832
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 772 TAAGGTAGCAGAAGTGGAGAGGTATCAACAACACCATCATCAAATGGTTAGTGGTTCAGA 831
Query 833 GATCACCGCCATCGAAGCTTTAGCCTCACGCAATTACTTTGCTCATAGTATTATGACTGC 892
||| | || || ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 832 GATTAATGCAATTGAAGCTTTAGCCTCACGCAATTACTTTGCTCATAGCATTATGACTGC 891
Query 893 TGGTTCTGGTTCTGGTAATGGAGGTTCTTACTCTGACCCCGACAAGAAAATCCTTCATCT 952
||||||||| |||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 892 TGGTTCTGGATCTGGTAATGGAGGTTCTTACTCTGATCCCGACAAGAAAATTCTTCATCT 951
Query 953 CGGTTAATCTCGTGGGTGAAAATC-GAGCTGCAATAACGCTCTGCAT-C-T--GGGGATT 1007
||| ||||||||| | ||||| | ||||||||||||| |||||||| | | |||||||
Sbjct 952 CGGATAATCTCGTCTGCGAAAAACCGAGCTGCAATAACTCTCTGCATGCATCTGGGGATT 1011
Query 1008 CTCTACTCAGATTTATCTCTACATAAAATATGTTTTGGTTTATGATAATAATTCAAAGTA 1067
|| | |||||||||||||||||||||||||||||||||| | | ||||||||||||||
Sbjct 1012 CTTTGCTCAGATTTATCTCTACATAAAATATGTTTTGGTGCA--A-AATAATTCAAAGTA 1068
Query 1068 CAATGAAGGTATTGATCCTTCAAGACTCATTGGAAATTGTGTTGTGTAATGATGAAGACA 1127
|||||||||||||| ||||||||||||||||| || ||||||||||||||||| ||||||
Sbjct 1069 CAATGAAGGTATTGGTCCTTCAAGACTCATTGCAATTTGTGTTGTGTAATGATTAAGACA 1128
Query 1128 TACTCT 1133
||||||
Sbjct 1129 TACTCT 1134
> AT3G58780.3 | Symbols: SHP1 | K-box region and MADS-box transcription
factor family protein | chr3:21738460-21742517 FORWARD
LENGTH=1894
Length=1894
Score = 180 bits (97), Expect = 3e-44
Identities = 155/182 (85%), Gaps = 7/182 (4%)
Strand=Plus/Plus
Query 269 GGGAAGA-GGAAAGATAGAAATAAAGAGGATAGAGAACTCAACAAATCGACAAGTGACGT 327
||| ||| ||||| ||||| |||||||||||||||||| |||||||||| ||||| || |
Sbjct 370 GGG-AGAGGGAAA-ATAGAGATAAAGAGGATAGAGAACACAACAAATCGTCAAGTTAC-T 426
Query 328 TT-TGCAAAAGAAGAAATGGACTTCTGAAGAAAGCCTATGAGCTTTCGGTCCTT-TGCGA 385
|| |||||| || | ||||| ||||| |||||||| ||||| || || || ||| || ||
Sbjct 427 TTCTGCAAACGACGCAATGGTCTTCTCAAGAAAGCTTATGAACTCTCTGT-CTTGTGTGA 485
Query 386 TGCAGAAGTTGCGCTCATTGTCTTCTCCACTCGTGGCCGTCTCTATGAGTACGCCAATAA 445
||| |||||||| ||| | ||||||||||||||||||||||||||||||||||||| ||
Sbjct 486 TGCCGAAGTTGCCCTCGTCATCTTCTCCACTCGTGGCCGTCTCTATGAGTACGCCAACAA 545
Query 446 CA 447
||
Sbjct 546 CA 547
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55572003315
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5