BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489845
Length=940
Score E
Sequences producing significant alignments: (Bits) Value
AT4G09990.1 | Symbols: | Protein of unknown function (DUF579) ... 1332 0.0
> AT4G09990.1 | Symbols: | Protein of unknown function (DUF579)
| chr4:6258880-6260073 REVERSE LENGTH=1112
Length=1112
Score = 1332 bits (721), Expect = 0.0
Identities = 871/944 (92%), Gaps = 7/944 (1%)
Strand=Plus/Plus
Query 1 AAGGAAAACATGAGGAACAAACCCCAATCAATCATCAGCGCAAAGCTTATATTCATTTGT 60
||||||||||||||||| ||| |||||||| |||||||| ||||||||||||||||||||
Sbjct 1 AAGGAAAACATGAGGAATAAATCCCAATCATTCATCAGCTCAAAGCTTATATTCATTTGT 60
Query 61 TTCTCAATCTTGGTCTTGTTCATTCTCTTCTTGAATAGAGCAAGCTTCTCTTCCTCTTCA 120
| |||||||||||| |||||||||||||||||||| |||||||||||||||||| ||||
Sbjct 61 TGCTCAATCTTGGTGTTGTTCATTCTCTTCTTGAAAAGAGCAAGCTTCTCTTCCAATTCA 120
Query 121 ACCTCAACCATACGACG-CGAATATCACGAGATACCTAAATGCCCATTAACCTCACTACA 179
||| ||||||| ||| | |||||||||| ||| | | || ||||||| |||| ||| |||
Sbjct 121 ACCGCAACCATTCGA-GACGAATATCACCAGAAATCGAAGTGCCCATCAACCCCACAACA 179
Query 180 ATGCACCAAAATT-CCTA-TATCTCTATCAGACGCATTGGTTCACTATGTCACCACAGAG 237
||||||| ||||| || | | |||||||| |||||||||||||||||||||||| |||||
Sbjct 180 ATGCACC-AAATTGCCCACT-TCTCTATCCGACGCATTGGTTCACTATGTCACCTCAGAG 237
Query 238 ATCACACCACAACAAACGTTTGATGAAATTTCAGTCTCAAAGAGAGTCTTGGACAAGAAA 297
||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct 238 ATCACACCACAACAAACGTTTGATGAAGTCTCAGTCTCAAAGAGAGTCTTGGACAAGAAG 297
Query 298 TCTCCTTGTAACTTCCTCGTCTTTGGCTTAGGACACGACAGCTTGATGTGGGCATCTCTC 357
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 298 TCTCCTTGTAACTTCCTCGTCTTTGGCTTAGGACACGATAGCTTGATGTGGGCATCTCTC 357
Query 358 AATCATGGTGGACGCACTTTGTTCCTCGAGGAAGATAAATCTTGGATCGAGACAGTGACT 417
||||| |||||||||||||||||||||||||||||| || ||||||| |||||||| |||
Sbjct 358 AATCACGGTGGACGCACTTTGTTCCTCGAGGAAGATGAAGCTTGGATTGAGACAGTAACT 417
Query 418 AAGAAATTCCCAAACTTAGAATCATACCACGTTGAATACGACACGAAAGTGAAAGATTCC 477
||||||||||||||||| ||||| |||||||| | ||||||||| |||||||||||||||
Sbjct 418 AAGAAATTCCCAAACTTGGAATCCTACCACGTCGTATACGACACAAAAGTGAAAGATTCC 477
Query 478 AACAAGCTTATTGAGCTAGAGAGAACAGAGGATTGCAAAGCTGTGTCTGATCCGAGAGAT 537
||||||||||| |||||| |||||||||||||||||||||| ||||||||||| ||||||
Sbjct 478 AACAAGCTTATGGAGCTAAAGAGAACAGAGGATTGCAAAGCCGTGTCTGATCCTAGAGAT 537
Query 538 TCGAAATGTGCTCTGTCTTTGAAGGATTTTCCGGCTGACGTGTACGAGACGCAATGGGAT 597
|| ||||||||||||||| | |||| |||||| |||||||||||||||||||||||||||
Sbjct 538 TCCAAATGTGCTCTGTCTCTCAAGGGTTTTCCAGCTGACGTGTACGAGACGCAATGGGAT 597
Query 598 GTGATAATGGTCGATGCTCCCACTGGTTACAACGACGAAGCTCCAGGGAGGATGAGTGCT 657
|||||||||||||||||||||||||||||| |||| |||||||||||||||||||| |||
Sbjct 598 GTGATAATGGTCGATGCTCCCACTGGTTACCACGATGAAGCTCCAGGGAGGATGAGCGCT 657
Query 658 ATTTATACGGCGGGTTTATTGGCTCGTAACCGTTATGACGGCGGCGAGACTGATGTTTTC 717
||||| || |||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 658 ATTTACACTGCGGGTTTATTGGCTCGTAACCGTTATGACGGTGGGGAGACTGATGTTTTC 717
Query 718 GTTCACGACATTAACCGGCCTGTGGAGGATGAGTTCTCGGTGGCGTTCTTGTGTCGAGGG 777
|||||||| ||||||||||| |||||||| |||||||||||||||||||||||| |||||
Sbjct 718 GTTCACGATATTAACCGGCCGGTGGAGGACGAGTTCTCGGTGGCGTTCTTGTGTGGAGGG 777
Query 778 TACATTAAGGAGCAGCAGGGGAGGCTTAGGCATTTCACCATCCCTAGCCATCGGGCTAGC 837
||||| || |||||||| || || ||||||||||||| |||||||||||| |||||||||
Sbjct 778 TACATGAAAGAGCAGCAAGGAAGACTTAGGCATTTCAACATCCCTAGCCACCGGGCTAGC 837
Query 838 CTCGGTACACCGTTTTGTCCGGCGGATATCAGTCGCCGCTTTTGAAATTGTCCAATGAGA 897
|||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 838 TTCGGTACACCGTTTTGTCCGGCGGATATCAGTCGCCGCTTTTGATATTGTACAATGAGA 897
Query 898 GAAA-GTGCAAAGAACAATAACAAGAAAACTTGGCAAAGGACTT 940
|||| |||||||||||||||||||||||||||||||||||||||
Sbjct 898 GAAAAGTGCAAAGAACAATAACAAGAAAACTTGGCAAAGGACTT 941
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45964244505
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5