BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg489849

Length=489
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G10040.1 | Symbols: CYTC-2 | cytochrome c-2 | chr4:6276998-6...   730    0.0  


> AT4G10040.1 | Symbols: CYTC-2 | cytochrome c-2 | chr4:6276998-6278509 
FORWARD LENGTH=652
Length=652

 Score =  730 bits (395),  Expect = 0.0
 Identities = 468/501 (93%), Gaps = 14/501 (3%)
 Strand=Plus/Plus

Query  1    AGAAACCGTCAAAAAGCCACCGTTGAGAATTTCTT-C------C-TC--CAATGGCGTCG  50
            ||||||||||||||||||||||||||  ||||||| |      | ||  |||||||||||
Sbjct  36   AGAAACCGTCAAAAAGCCACCGTTGA-TATTTCTTCCTTGTTGCTTCTTCAATGGCGTCG  94

Query  51   TTCGATGAAGCACCTCCCGGAAACCCCAAAGCCGGTGAAAAAATCTTCAGAACCAAATGC  110
            ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct  95   TTCGACGAAGCACCTCCCGGAAACCCCAAAGCCGGTGAAAAGATCTTCAGAACCAAGTGC  154

Query  111  GCTCAGTGTCACACCGTCGAAAAAGGTGCCGGTCACAAACAAGGACCGAATTTGAATGGA  170
            |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct  155  GCTCAGTGTCACACCGTCGAGAAAGGTGCCGGTCACAAACAAGGACCGAATTTGAATGGA  214

Query  171  TTGTTTGGAAGACAATCTGGAACAACACCAGGATATTCATACTCTGCTGCTAACAAAAGC  230
            |||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct  215  TTGTTTGGAAGACAATCTGGAACAACTCCAGGATATTCTTACTCTGCTGCTAACAAAAGC  274

Query  231  ATGGCTGTGAATTGGGAGGAGAAGACTCTTTACGATTACTTGTTGAATCCTAAGAAGTAC  290
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  275  ATGGCTGTGAATTGGGAGGAGAAGACTCTTTACGATTACTTGTTGAATCCTAAGAAGTAC  334

Query  291  ATCCCTGGAACGAAAATGGTGTTTCCTGGACTGAAAAAGCCGCAAGATCGTGCCGATCTC  350
            ||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct  335  ATCCCTGGAACAAAAATGGTGTTTCCTGGACTGAAAAAACCGCAAGATCGTGCCGATCTC  394

Query  351  ATCGCTTACTTGAAGGAAGGTACTGCATAAGACAGGCACGGCTGGATATTTGAAGCTG-C  409
            |||||||| ||||||||||||||||| || ||||||| || |  ||||| |||||||| |
Sbjct  395  ATCGCTTATTTGAAGGAAGGTACTGCTTA-GACAGGCTCGTCCAGATATATGAAGCTGGC  453

Query  410  AtttttttttCTCACAGATAAATAAA-TCAGACCAAAAATATTATGGTCATGAACTGGTT  468
            ||||||||||||||||| |||||||| |||||||||||||||||||||||||||||| ||
Sbjct  454  ATTTTTTTTTCTCACAGCTAAATAAAATCAGACCAAAAATATTATGGTCATGAACTGCTT  513

Query  469  TTTGTATGGTCTTTTCTTCTT  489
            ||||||||||||||| |||||
Sbjct  514  TTTGTATGGTCTTTTATTCTT  534



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23308644208


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5