BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489850
Length=1262
Score E
Sequences producing significant alignments: (Bits) Value
AT4G10050.1 | Symbols: | esterase/lipase/thioesterase family p... 1714 0.0
> AT4G10050.1 | Symbols: | esterase/lipase/thioesterase family
protein | chr4:6284450-6287293 REVERSE LENGTH=1330
Length=1330
Score = 1714 bits (928), Expect = 0.0
Identities = 1157/1262 (92%), Gaps = 37/1262 (3%)
Strand=Plus/Plus
Query 1 AAAAGCAAATTGTAGAAGAAGAAGAAG-AGTGA-AG-GA-ACTGAGAAGATCTGTGAAAT 56
||||||||||||||||||||||||||| || | || || ||||||||||||||||| ||
Sbjct 7 AAAAGCAAATTGTAGAAGAAGAAGAAGAAG-AAGAGTGATACTGAGAAGATCTGTGAGAT 65
Query 57 TATTATACATTCGATTCCGA-AAATTTCGCAAACCTTAAAAACCTCTCAACAATGGATTC 115
|||||| |||||||| || | ||| | |||||| || ||||||||||||||
Sbjct 66 TATTAT--ATTCGATTTTGATCAGTTT-------C-TAAAAAGCTTTCAACAATGGATTC 115
Query 116 TTCTTCAAATTTAAATCCTCTTCGTGAAGATACCTCAGAGGATCA-TT--------TAGA 166
||||||||||| ||||||||||||||||||||||||||||| || || ||||
Sbjct 116 GTCTTCAAATTTGAATCCTCTTCGTGAAGATACCTCAGAGGAACATTTAGAACCCATAGA 175
Query 167 AGCTCCGGCGTCTGTCTTCGCCTCTCGTCCTCTTCGTCCTCCTTCTACGAGTTCGTCGGA 226
|||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||
Sbjct 176 AGCTCCGGCGTCTGTCTTCGCCGCTCGTCCTCTTCGTCCTCCTTCTACGAATTCGTCGGA 235
Query 227 GAAGTATTCGCCTGTAGAATGGACAAGCTATTTTGATAAAGAAGATGATATATCAATCAC 286
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 236 GAAGTATTCGCCTGTAGAATGGAAAAGCTATTTTGATAAAGAAGATGATATATCAATCAC 295
Query 287 TAGCTCTGACGATGTGTTTCATGTATATATGGCAGGATCA-GAAGGACCTGTTGTCTTTT 345
| ||||||| |||||||||||||| |||||||||||| | |||||||||||||||||||
Sbjct 296 TGGCTCTGATGATGTGTTTCATGTGTATATGGCAGGA-AATGAAGGACCTGTTGTCTTTT 354
Query 346 GTCTTCATGGTGGTGGCTATTCTGGGCTTTCGTTTTCTATAGTGGCAAGTCAAATTAAGG 405
|||| |||||||||||||| |||||||| |||||||||||||| |||||| |||||||||
Sbjct 355 GTCTCCATGGTGGTGGCTACTCTGGGCTCTCGTTTTCTATAGTAGCAAGTAAAATTAAGG 414
Query 406 AGAAAGCACGTGTGGTTGCGATGGACTTGAGAGGACACGGTAAATCGGTTTCCGAGAATG 465
|||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |
Sbjct 415 AGAAAGCACGTGTGGTTGCGATGGACTTGAGAGGGCACGGTAAATCGGTTTCGGAGAACG 474
Query 466 AATTGGACTTGTCGCTTGAGACTATGAGCAATGATGTTGTT-GCTGTGATTAAGGAATTG 524
||||||| || ||||||||||| ||||||||||||||| || ||||| ||||||||||||
Sbjct 475 AATTGGAGTTATCGCTTGAGACAATGAGCAATGATGTT-TTGGCTGTCATTAAGGAATTG 533
Query 525 TATGGAGACTCTCCTCCAGCTATTGTGCTAGTTGGTCACAGCATGGGAGGTTCGGTCGCT 584
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 534 TATGGAGACTCTCCTCCAGCTATTGTGCTAGTTGGTCACAGCATGGGAGGTTCGGTCGCT 593
Query 585 GTACAAGTTGCTGCAAACAAAACATTGCCTAGCTTGGCTGGGCTTGTCGTTGTGGATGTT 644
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 594 GTGCAAGTTGCTGCAAACAAAACATTGCCTAGCTTGGCTGGGCTTGTCGTTGTGGATGTT 653
Query 645 GTTGAGGGTACTGCTATTGCCTCGCTAATTCACATGCAGAAAATCCTTTCAAACAGAATG 704
|||||||||||||||||| |||| | ||||||||||||||||| |||||||||||||||
Sbjct 654 GTTGAGGGTACTGCTATTTCCTCATTGATTCACATGCAGAAAATTCTTTCAAACAGAATG 713
Query 705 CAACATTTTCCCAGCATCGAAAAAGCAATTGAATACAGCGTTAGAGGAGGGTCATTAAGG 764
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 714 CAACATTTTCCCAGCATCGAAAAAGCAATTGAATACAGCGTTAGAGGAGGGTCATTAAGA 773
Query 765 AACATTGACTCTGCACGTGTCTCAATCCCCCCAACTCTCAAATATTATGATTCAAAGCAG 824
|||||||| || || |||||||| |||||| |||||||||||||| |||||||||||||
Sbjct 774 AACATTGATTCAGCCCGTGTCTCTATCCCCACAACTCTCAAATATGATGATTCAAAGCAT 833
Query 825 TGCTACGTTTACCGGACACGTCTTGAAGAAACAGAGCAATATTGGAAAGGCTGGTATGAC 884
|||||||||||||| |||||||| || ||||||||||||||||||||||||||||| ||
Sbjct 834 TGCTACGTTTACCGAACACGTCTAGAGGAAACAGAGCAATATTGGAAAGGCTGGTACGAT 893
Query 885 GGTCTCTCAGAGAAGTTCTTGTCATCTCCGGTTCCAAAACTCTTGCTATTAGCTGGTACT 944
||||||||||||||||| |||||||| || ||||| |||||||||||||||||||| |||
Sbjct 894 GGTCTCTCAGAGAAGTTTTTGTCATCCCCAGTTCCGAAACTCTTGCTATTAGCTGGAACT 953
Query 945 GACAGGTTGGACAGGACCCTCACAATTGGTCAAATGCAAGGAAAGTTTCAGATGATTGTT 1004
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 954 GATAGGTTGGACAGGACCCTCACAATTGGTCAAATGCAAGGAAAGTTTCAGATGATTGTG 1013
Query 1005 GTCAAACACACAGGACATGCCATACAGGAAGATGTACCGGAGGAGTTTGCGAATCTAGTT 1064
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1014 GTCAAACACACCGGACATGCCATACAGGAAGATGTACCGGAGGAGTTTGCGAATCTAGTT 1073
Query 1065 CTGAATTTCATATCACGTAACAGAATTGGTCCTCATGGTGTTGAGATACCAGGAATGTGG 1124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1074 CTGAATTTCATATCACGTAACAGAATTGGTCCTCATGGTGTTGAGATACCAGGAATGTGG 1133
Query 1125 AAACCTTCACAACAACAGCCTAAGACTTGAATCAGCCATCACCGGACAATGCCAAAGCCA 1184
|||||||||||||| | | ||||||||||| |||||||||| |||||||||||||| |
Sbjct 1134 AAACCTTCACAACAG-A-C-TAAGACTTGAAGCAGCCATCACTGGACAATGCCAAAGTCG 1190
Query 1185 TCGTGTGGG-CTAATCCCTTTGTTTCGCTTGGTCAGCTTATGAATAAACA-AA--AACAA 1240
|||||||| ||| || ||| ||||||||| ||| | ||||||||||||| || |||||
Sbjct 1191 TCGTGTGGCTCTACTCACTT-GTTTCGCTTTGTCCGTTTATGAATAAACAGAATTAACAA 1249
Query 1241 AC 1242
||
Sbjct 1250 AC 1251
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62047873620
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5