BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489853
Length=1324
Score E
Sequences producing significant alignments: (Bits) Value
AT4G10080.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1243 0.0
> AT4G10080.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT4G13530.1);
Has 120 Blast hits to 114 proteins in 21 species: Archae -
2; Bacteria - 4; Metazoa - 0; Fungi - 12; Plants - 100; Viruses
- 0; Other Eukaryotes - 2 (source: NCBI BLink). | chr4:6300058-6302654
REVERSE LENGTH=1468
Length=1468
Score = 1243 bits (673), Expect = 0.0
Identities = 826/897 (92%), Gaps = 21/897 (2%)
Strand=Plus/Plus
Query 439 GGTGTTGAAGAGCCTATTGAGGATTCGAGCAAGTCGTGTTCTGATTTAGGGGGATGTGAA 498
||||||||||| |||||||||||||||||||||| ||||||||||||||||||| ||||
Sbjct 560 GGTGTTGAAGAACCTATTGAGGATTCGAGCAAGTTGTGTTCTGATTTAGGGGGAAATGAA 619
Query 499 TTGGTTTCTGGAGATTCTGAGGTTGTGAATGGTGAAGATG-AGATTGTTTCTGATGGTGG 557
||||||||| ||||||||| |||||||||||||||| | | || ||||||||||| |||
Sbjct 620 TTGGTTTCTCGAGATTCTGGGGTTGTGAATGGTGAAAAAGAAG-TTGTTTCTGATAGTGT 678
Query 558 AGTTGCTTCTAGTGAAGCAATTGAGGGAAATGGAGGGA-ATA-T-TAGAGAAGTT-GTGG 613
||||||||||||||||| ||||||||||| |||| ||| ||| | | | |||||| | ||
Sbjct 679 AGTTGCTTCTAGTGAAGTAATTGAGGGAAGTGGA-GGAGATACTGT-G-GAAGTTGGAGG 735
Query 614 CTGCAAATTCTGGTGATGAGGGTAAAAGTAGAGAGACTGTGTGGTGGAAGATGCCATTTG 673
| | | |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 736 C-GTGAGTTCTGGTGGTGAGGGTAAAAGTAGAGAGACTGTGTGGTGGAAGATGCCATTTG 794
Query 674 TGCTTCTTAAGTACTCTGCGTTTAAGATTGGTCCGGTTTGGTCCGTCTCTATGGCTGCAG 733
|||||||||||||||||| ||||| |||||||||||||||||| |||||||||||||| |
Sbjct 795 TGCTTCTTAAGTACTCTGTGTTTAGGATTGGTCCGGTTTGGTCTGTCTCTATGGCTGCTG 854
Query 734 CTGTGATGGGTTTGGTTCTCTTGGGACGCAGATTGTATAATATGAAGAAAAAAGCTCAAA 793
|||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 855 CTGTGATGGGTTTGGTTCTCTTGGGACGTAGATTGTATAATATGAAGAAGAAAGCTCAAA 914
Query 794 GGTTCCATCTTAAAGTTACGATTGATGATAAGAAGGCGTCGCGGGTGATGAGTCAGGCAG 853
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 915 GGTTCCATCTTAAAGTTACGATTGACGATAAGAAGGCGTCGCGGGTGATGAGTCAGGCTG 974
Query 854 CTCGACTCAATGAAGTGTTCACAGAGGTAAGAAGGGTCCCTGTGATCCGTCCTGCTCTAC 913
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 975 CTCGACTCAATGAAGTGTTCACAGAGGTAAGAAGGGTCCCTGTGATCCGCCCTGCTCTAC 1034
Query 914 CATCTCCTGGCGCCTGGCCGGTTTTGAGCCTTAGATGAGAAGCCGTTT-CTACAATACCT 972
|||| |||||||| |||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1035 CATCGCCTGGCGCATGGCCGGTTTTGAGCCTTAGATGAGAAGCCGTTTTCTACAATACCT 1094
Query 973 ATACACAGTGGAGAATCAATCGTACAATGTCCATCACTTTATGTACCGTAAGAATACAGA 1032
| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
Sbjct 1095 AGACACAGTGGAGAATCAATCATACAATGTCCATCACTTTATGTACCGTAAGAATACAAA 1154
Query 1033 TACATGTGTGTTTATGTCGTACCTATGCATAAGTAGTAGTTTACCATCTTATGAAATCGC 1092
||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1155 TACATGTGT-TT-ATGTCGTACCTATGCATAAGTAGTAGTTTACCATCTTATGAAATCGC 1212
Query 1093 -TCATGTGAGTCGTGTCCTTGCCGTGGGATACACTGCAGAGTGATTACAGTAGCGATTTA 1151
| ||||||||||||||| ||||||||||||||||||||||||||| |||||||||||
Sbjct 1213 GT-ATGTGAGTCGTGTCCCAACCGTGGGATACACTGCAGAGTGATTACCGTAGCGATTTA 1271
Query 1152 TGTATGTCCAGAGACTGAAAATCTCAGTTGGCTA-GCCTTTTTATATGTTTGATCGTAAG 1210
||||||| ||||||||||||||| ||||||| || |||||||| ||||||||||| ||||
Sbjct 1272 TGTATGTTCAGAGACTGAAAATCCCAGTTGG-TAAGCCTTTTTCTATGTTTGATCTTAAG 1330
Query 1211 AATATCAGAAGCTAT--GTGGGTTTTGTTATGGATGTCATCGGGGTTTGAAGCTTGGAAA 1268
||| ||| ||||||| |||||||||||||||||| |||| ||||||| ||||||| |||
Sbjct 1331 AATTTCATAAGCTATATGTGGGTTTTGTTATGGATTTCATTGGGGTTTCAAGCTTGTAAA 1390
Query 1269 -TGAACATAGAGACGAGGACATAGTCCGAAGTCGATAAAACCGCTACAATGGAAATA 1324
| | ||||||| ||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 1391 CT-ATTATAGAGAGGAGGACATAGTCCAAAGTCGATAAAACCACTACAATGGAAATA 1446
Score = 255 bits (138), Expect = 6e-67
Identities = 177/194 (91%), Gaps = 9/194 (5%)
Strand=Plus/Plus
Query 1 CATTAGGGTTTCTGATTATTGCAATTCCAATCTGAAATCTTCGATATTTCGATCGTCATG 60
||||||||||||||||||||||||| |||||||||||||||||| | ||||||| |||||
Sbjct 40 CATTAGGGTTTCTGATTATTGCAATCCCAATCTGAAATCTTCGA-A-TTCGATCATCATG 97
Query 61 GATGATTGGGAGATTCTTCA--GT-GCTCCGATACAGAATCAACTGATTCAATCACATCG 117
|||||||||||| ||||||| | |||| ||||||||||||||||||||||||||||||
Sbjct 98 GATGATTGGGAGCTTCTTCATCATGGCTCTGATACAGAATCAACTGATTCAATCACATCG 157
Query 118 GAGAAGAAATTGGAGTGTGT-AAGTC-TAATCGATGACGGTATGATTCTTTCTGATCATT 175
|||| |||||| ||| || | ||| | |||||||||||||||||||||||||||||||||
Sbjct 158 GAGACGAAATTAGAGAGT-TCAAG-CGTAATCGATGACGGTATGATTCTTTCTGATCATT 215
Query 176 TCTCTGCTACTGAT 189
||||||||||||||
Sbjct 216 TCTCTGCTACTGAT 229
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65160307410
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5