BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489854
Length=922
Score E
Sequences producing significant alignments: (Bits) Value
AT4G10660.1 | Symbols: | CDC68-related | chr4:6582535-6583488 ... 917 0.0
AT4G10695.1 | Symbols: | CDC68-related | chr4:6593774-6594478 ... 761 0.0
AT4G10700.1 | Symbols: | BEST Arabidopsis thaliana protein mat... 315 7e-85
> AT4G10660.1 | Symbols: | CDC68-related | chr4:6582535-6583488
FORWARD LENGTH=954
Length=954
Score = 917 bits (496), Expect = 0.0
Identities = 647/719 (90%), Gaps = 13/719 (2%)
Strand=Plus/Plus
Query 55 GCTGAAT-ATGTTCGGGTTGCGGAAAAGCATCCATGGGTTATCACCTTTCCGAAACATGA 113
||||||| | |||||||||| ||||||||||||||||||||||||||||||||| |||||
Sbjct 25 GCTGAATCA-GTTCGGGTTGTGGAAAAGCATCCATGGGTTATCACCTTTCCGAACCATGA 83
Query 114 TGACTTGACCATCTTC-ATT-GATCCATTGGAACGGAAGAGGTACACACTGAATTTACCC 171
||||||| | | ||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 84 AGACTTGA-C-TTTTCTCTTCGATCCATTGGAACGGAAGAGGTACACACTGAATTTACCC 141
Query 172 GAGTTAGCTGGAACCGATGTTTGTTACTCGAAATACGGATGGTTGCTTATGCGAAGATTG 231
||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 142 GAGTTAGTTGGAACCGATGTTTGTTACTCGAAAGACGGATGGTTGCTTATGCGAAGATCC 201
Query 232 AATTTAGTGGACATGTTCTTCTTCAACCCTTATACTCGAGAGCTTATAAATTTACCAAAG 291
| ||||||||||||||||||||||||||| |||||| | ||||||||||| || ||||||
Sbjct 202 AGTTTAGTGGACATGTTCTTCTTCAACCCGTATACTAGGGAGCTTATAAACTTGCCAAAG 261
Query 292 TGTGAGTTGTCCTTCCAGGCGATTGCTTTCTCTTCTGCCCCTACATCGGGTACTTGTGCG 351
||||||||| |||| || ||||||||||||||||| ||||||||||| |||||||||| |
Sbjct 262 TGTGAGTTGGCCTTTCAAGCGATTGCTTTCTCTTCGGCCCCTACATCAGGTACTTGTGTG 321
Query 352 GTAATAGCGTTAAGACCTTTTACGAGATATAGCGTTCGTATAAGCATTTGTC-ATCCTGG 410
|| ||||||||||||||||||| ||||||| | | |||||||||||||| | |||||||
Sbjct 322 GTGTTAGCGTTAAGACCTTTTACAAGATATATCATCCGTATAAGCATTTG-CTATCCTGG 380
Query 411 AGCCATTGAGTGGATTACTCAAGATTTTTCTTGCTCTATTGGATTTGACCTATACATGCA 470
||| | |||||||||||||||||| ||||| |||||| || ||||||||| |||||||||
Sbjct 381 AGCAACTGAGTGGATTACTCAAGAATTTTCATGCTCTCTTAGATTTGACCCATACATGCA 440
Query 471 TAGCGACCTTGTCTACGCCAATGATCACTTCTATTGCTTCAGCTCGGGCGGTGTTTTAGT 530
|||| |||||||||| ||||| |||||||||||||| || ||||| || |||||||||||
Sbjct 441 TAGCAACCTTGTCTATGCCAACGATCACTTCTATTGTTTTAGCTCAGGAGGTGTTTTAGT 500
Query 531 AGACTTTGATCTATCTTCCCGCACAATGAGTCATCAAGCATGGAATGAACATAGATGCCC 590
||||||||| || ||||||||||||||||| | |||||||||||||||||||||||| |
Sbjct 501 TGACTTTGATGTAGCTTCCCGCACAATGAGTGAACAAGCATGGAATGAACATAGATGCGC 560
Query 591 TTATATTCATAATGATAATG-ATGAATGGTTTAATATGCTGAAGAGAATTTACTTAGTTG 649
|||||| | ||||||||||| | |||||||||||| | | ||||||||||||||| | ||
Sbjct 561 TTATATGCGTAATGATAATGCA-GAATGGTTTAATCTTCCGAAGAGAATTTACTTGGCTG 619
Query 650 AGCAGAAAGGAGAGCTCTTTCTCATGTATACATGTAGCAGCGAGATACCGATGGTGTATA 709
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 620 AGCAGAAAGGAGAGCTCTTTCTCATGTATACATGTAGCAGCGAGATACCGATGGTGTATA 679
Query 710 AACTTGTCTCCTCGAGTTGGGAGGAGATGAGTAGTATTCTACTCTTGACGGCA-GACAA 767
||||||||||||| | |||||||||||| | ||||| |||||||||||||| |||||
Sbjct 680 AACTTGTCTCCTCAAATTGGGAGGAGATAAATAGTA--CTACTCTTGACGGCGTGACAA 736
Score = 191 bits (103), Expect = 1e-47
Identities = 120/128 (94%), Gaps = 2/128 (2%)
Strand=Plus/Plus
Query 795 GGATGTTTATCCTACTCGTTTGATGAAGGTAGGTACTATCCGCGTAAGCAGCTTCCAAAA 854
|||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 829 GGATGTGTATCCTACTCGTTTGATGAAGCCAGGTACTATCCGCGTAAGCAGCTTCCAAAA 888
Query 855 CCAACAATATGGCAAAAGCAGAAAGAACTATGCCCTCTTAGGAGTCTCTGGATCGAGCCA 914
|||||||||||||||| |||||||||||| ||||||||||||||||| |||||||||||
Sbjct 889 CCAACAATATGGCAAATGCAGAAAGAACTTTGCCCTCTTAGGAGTCT--GGATCGAGCCA 946
Query 915 CCTTCTAA 922
|| |||||
Sbjct 947 CCGTCTAA 954
> AT4G10695.1 | Symbols: | CDC68-related | chr4:6593774-6594478
REVERSE LENGTH=705
Length=705
Score = 761 bits (412), Expect = 0.0
Identities = 559/628 (89%), Gaps = 18/628 (3%)
Strand=Plus/Plus
Query 40 GCATTGCGTAAAGCCGCTGAAT-ATGTTCGGGTTGCGGAAAAGCATCCATGGGTTATCAC 98
|||| ||||||||||||||||| | |||||||||| ||| |||||||||||||||||||
Sbjct 52 GCATGGCGTAAAGCCGCTGAATCA-GTTCGGGTTGTGGAGAAGCATCCATGGGTTATCAG 110
Query 99 CTTTCCGAAACATGATGACTTGACCA-TCTTCATT-GATCCATT-GGAACGGAAGAGGTA 155
|||||||| |||| | | | |||| | || || || |||||||| |||| ||||||| ||
Sbjct 111 CTTTCCGAGACATTACGGCGTGACTATTC-TC-TTCGATCCATTGGGAA-GGAAGAGTTA 167
Query 156 CACACTGAATTTACCCGAGTTAGCTGGAACCGATGTTTGTTACTCGAAATACGGATGGTT 215
||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||
Sbjct 168 CACACTGAATTTACCCGAGTTAGTTGGAACCGATGTTTGTTACTCGAAAGACGGATGGTT 227
Query 216 GCTTATGCGAAGATTGAATTTAGTGGACATGTTCTTCTTCAACCCTTATACTCGAGAGCT 275
|||||||||||||| | ||||||||||||||||||| ||||||| |||||| | |||||
Sbjct 228 GCTTATGCGAAGATCCAGTTTAGTGGACATGTTCTTCCTCAACCCGTATACTAGGGAGCT 287
Query 276 TATAAATTTACCAAAGTGTGAGTTGTCCTTCCAGGC-GATTGCTTTCTCTTCTGCCCCTA 334
|||||| || |||||||||||||||||||| ||||| | ||||||||||||| | ||||
Sbjct 288 TATAAACTTGCCAAAGTGTGAGTTGTCCTTTCAGGCTG-TTGCTTTCTCTTCGGTACCTA 346
Query 335 CATCGGGTACTTGTGCGGTAATAGCGTTAAGACCTTTTACGAGATATAGCGTTCGTATAA 394
|||| |||||||||||||||||||||||||||||||||||||||| || | |||||||||
Sbjct 347 CATCAGGTACTTGTGCGGTAATAGCGTTAAGACCTTTTACGAGATTTATCATTCGTATAA 406
Query 395 GCATTTGTC-ATCCTGGAGCCATTGAGTGGATTACTCAAGATTTTTCTTGCTCT-ATTGG 452
||||||| | ||||||||| | ||||||||||||||||||||||||||||||| | |||
Sbjct 407 GCATTTG-CTTTCCTGGAGCAACTGAGTGGATTACTCAAGATTTTTCTTGCTCTCA-TGG 464
Query 453 ATTTGA-CCTATACATGCATAGCGACCTTGTCTACGCCAATGATCACTTCTATTGCTTCA 511
|||||| || |||||||||||| | |||||||| ||||||| |||||||||||||||||
Sbjct 465 ATTTGAGCC-GTACATGCATAGCAATCTTGTCTATGCCAATGGTCACTTCTATTGCTTCA 523
Query 512 GCTCGGGCGGTGTTTTAGTAGACTTTGATCTATCTTCCCGCACAATGAGTCATCAAGCAT 571
||||||| ||||||||||| |||||||||||| |||||||||||||||||||||||||||
Sbjct 524 GCTCGGGAGGTGTTTTAGTTGACTTTGATCTAGCTTCCCGCACAATGAGTCATCAAGCAT 583
Query 572 GGAATGAACATAGATGCCCTTATATTCATAATG-ATAATGATGAATGGTTTAATATGCTG 630
|||||||||||| ||||||||||||||||| || | ||||| |||||||||| | | |
Sbjct 584 GGAATGAACATATATGCCCTTATATTCATA-TGTACAATGAAGAATGGTTTAGTCTTAGG 642
Query 631 AAGAGAATTTACTTAGTTGAGCAGAAAG 658
|||||||||||||| | |||||||||||
Sbjct 643 AAGAGAATTTACTTGGCTGAGCAGAAAG 670
> AT4G10700.1 | Symbols: | BEST Arabidopsis thaliana protein match
is: CDC68-related (TAIR:AT4G10660.1); Has 1807 Blast hits
to 1807 proteins in 277 species: Archae - 0; Bacteria - 0;
Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other
Eukaryotes - 339 (source: NCBI BLink). | chr4:6597863-6598658
REVERSE LENGTH=744
Length=744
Score = 315 bits (170), Expect = 7e-85
Identities = 221/245 (90%), Gaps = 6/245 (2%)
Strand=Plus/Plus
Query 55 GCTGAAT-ATGTTCGGGTTGCGGAAAAGCATCCATGGGTTATCACCTTTCCGAAACATGA 113
||||||| | |||||||||| ||||||||||||||||||||||||||||||||| |||||
Sbjct 25 GCTGAATCA-GTTCGGGTTGTGGAAAAGCATCCATGGGTTATCACCTTTCCGAACCATGA 83
Query 114 TGACTTGACCATCTTC-ATT-GATCCATTGGAACGGAAGAGGTACACACTGAATTTACCC 171
||| ||| | | ||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 84 AGACATGA-C-TTTTCTCTTCGATCCATTGGAACGGAAGAGGTACACACTGAATTTACCC 141
Query 172 GAGTTAGCTGGAACCGATGTTTGTTACTCGAAATACGGATGGTTGCTTATGCGAAGATTG 231
||| ||| ||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 142 GAGGTAGTTGGAACCGATGTTTGTTACTCGAAAGACGGATGGTTGCTTATGCGAAGATCC 201
Query 232 AATTTAGTGGACATGTTCTTCTTCAACCCTTATACTCGAGAGCTTATAAATTTACCAAAG 291
| ||||||||||||||||||||||||||| |||||| | ||||||||||| || ||||||
Sbjct 202 AGTTTAGTGGACATGTTCTTCTTCAACCCGTATACTAGGGAGCTTATAAACTTGCCAAAG 261
Query 292 TGTGA 296
| |||
Sbjct 262 TTTGA 266
Score = 313 bits (169), Expect = 2e-84
Identities = 215/237 (91%), Gaps = 3/237 (1%)
Strand=Plus/Plus
Query 532 GACTTTGATCTATCTTCCCGCACAATGAGTCATCAAGCATGGAATGAACATAGATGCCCT 591
||| |||||||| ||||||||||||||||| | |||||||||||||||||||||||| ||
Sbjct 265 GACCTTGATCTAGCTTCCCGCACAATGAGTGAGCAAGCATGGAATGAACATAGATGCGCT 324
Query 592 TATATTCATAATGATAATGATGAATGGTTTAATATGCTGAAGAGAATTTACTTAGTTGAG 651
||||| | |||||||||| ||||||||||||| | | ||||||||||||||| | ||||
Sbjct 325 TATATGCGCAATGATAATGCTGAATGGTTTAATCTTCCGAAGAGAATTTACTTGGCTGAG 384
Query 652 CAGAAAGGAGAGCTCTTTCTCATGTATACATGTAGCAGCGAGATACCGATGGTGTATAAA 711
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 385 CAGAAAGGAGAGCTCTTTCTCATGTATACATGTAGCAGCGAGATACCGATGGTGTATAAA 444
Query 712 CTTGTCTCCTCGAGTTGGGAGGAGATGAGTAGTATTCTACTCTTGACGGCA-GACAA 767
||||||||||| | || ||||||||||| ||||| |||||||||||||| |||||
Sbjct 445 CTTGTCTCCTCAAATTTGGAGGAGATGAATAGTA--CTACTCTTGACGGCGTGACAA 499
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45060029859
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5