BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg489855

Length=443
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G10100.1 | Symbols: CNX7, SIR5 | co-factor for nitrate, redu...   614    3e-175


> AT4G10100.1 | Symbols: CNX7, SIR5 | co-factor for nitrate, reductase 
and xanthine dehydrogenase 7 | chr4:6308683-6309546 
FORWARD LENGTH=596
Length=596

 Score =  614 bits (332),  Expect = 3e-175
 Identities = 412/449 (92%), Gaps = 12/449 (3%)
 Strand=Plus/Plus

Query  1    TATTAACCAGAGAAATAGTCGTCGCTG---ACTAACTAGAGCCGTCGGTGGTTGGTTTCG  57
            |||| ||||||||||| ||||||||||   |||||| |||||| |||||||||| |||||
Sbjct  11   TATTCACCAGAGAAATGGTCGTCGCTGACTACTAACCAGAGCCATCGGTGGTTGATTTCG  70

Query  58   CGATTTCGAGCTCCA-TCTCTTCCTGTCTCACCTAAATCTTCGGCGATC-AACTTTTACT  115
            ||||||||||||||| || || | |||||||||| ||||| |||||||| || ||| || 
Sbjct  71   CGATTTCGAGCTCCATTC-CTACTTGTCTCACCTTAATCTCCGGCGATCGAA-TTTCACG  128

Query  116  GCTCCGGTGGCCATGGACAAAGAAGTTATTACAAAGATTGAAAGTGATGACACTTCATCA  175
            | |||||||||||||||||||||||   ||||||||||||||||||||||||||||||| 
Sbjct  129  GTTCCGGTGGCCATGGACAAAGAAG---TTACAAAGATTGAAAGTGATGACACTTCATCG  185

Query  176  GTGGAGATCAAAGTGTTGTTATTCGCCAGAGCTCGAGAGCT-AGCAGGCGTGCCTGATCT  234
            |||||||||||||||||||||||||||||||| |||||||| | |||| |||||||||||
Sbjct  186  GTGGAGATCAAAGTGTTGTTATTCGCCAGAGCACGAGAGCTCA-CAGGTGTGCCTGATCT  244

Query  235  AACATTGAAGATGCCATCAGGTAGTACAACACAGAAATGTATGGATGAGTTGGTGCTTAA  294
            |||| ||||||||||||||||||||||||||||||||||  |||||||||||||||||||
Sbjct  245  AACACTGAAGATGCCATCAGGTAGTACAACACAGAAATGCCTGGATGAGTTGGTGCTTAA  304

Query  295  GTTTCCAAGCTTGGAAGAGGTACGTAGCTGTGTCGTTCTTGCTTTGAATGAGGAATATAC  354
            ||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||||||
Sbjct  305  GTTTCCAAGCTTGGAAGAGGTACGTAGCTGTGTTGTTCTCGCTTTGAACGAGGAATATAC  364

Query  355  AACCGACTCCGCCATTGTTCAACATAGAGATGAGTTAGCCATCATACCTCCAATAAGCGG  414
            |||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct  365  AACCGATTCCGCCATTGTTCAACATAGAGATGAGTTAGCCATCATACCTCCGATAAGCGG  424

Query  415  CGGCTAATGCATCGGCACTGCTTAAATCC  443
            |||||||||||||| |||| |||||||||
Sbjct  425  CGGCTAATGCATCGACACTTCTTAAATCC  453



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21062186831


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5