BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489858
Length=688
Score E
Sequences producing significant alignments: (Bits) Value
AT4G10110.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) fami... 800 0.0
> AT4G10110.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:6309393-6310869 REVERSE LENGTH=795
Length=795
Score = 800 bits (433), Expect = 0.0
Identities = 558/615 (91%), Gaps = 22/615 (4%)
Strand=Plus/Plus
Query 1 GCTTTTGATTTCTCAATTCATCTTCTTCTCAGCTTTAGGGTTTCCATTGTTCCGATCAAC 60
|||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| ||
Sbjct 1 GCTTTTGATTTCTCGATTCATCTTCTTCTCAGCTTTAGGGTTTCGATTGTTCCGATC-AC 59
Query 61 AATGTCTACGAATTCCAATTGCACCGTCTACATAGGAAACGTAGACGAGAGAGTAAGCGA 120
|||||| || ||||||||||||||| |||||||| ||||| ||||| |||||||||||
Sbjct 60 TATGTCTGGGACTTCCAATTGCACCGTATACATAGGGAACGTTGACGAAAGAGTAAGCGA 119
Query 121 TAGGGTTTTGTATGATATCATGATTCAAGCTGGTAGAGTAATCGATCTACACATTCCTCG 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 TAGGGTTTTGTATGATATCATGATTCAAGCTGGTAGAGTAATCGATCTACACATTCCTCG 179
Query 181 TGATAAAGAAACTGATAAACCTAAAGGCTTTGCCTTT-GCTGAGTATGAGACTGAAGAAA 239
||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||
Sbjct 180 TGATAAAGAAACTGATAAACCTAAAGGCTTTGC-TTTCGCTGAGTATGAGACTGAAGAAA 238
Query 240 TCGCTGATTACGCCGTTAAGCTTTTCTCCGGTCTTGTTTCGCTCTATAATCGGAA-TCTG 298
|||| ||||||||||||||||||||||| || |||||||| ||||| ||||| || | ||
Sbjct 239 TCGCCGATTACGCCGTTAAGCTTTTCTCTGGACTTGTTTCTCTCTACAATCG-AACTTTG 297
Query 299 AAGTTCGCTATATCTGGACAGGATAAGTTACAGGC-------G-AA-TTCCGGTCA--GA 347
|| ||||||||||||||||||||||||||||| | | || ||||||||| ||
Sbjct 298 AAATTCGCTATATCTGGACAGGATAAGTTACAATCAAATTCTGCAAATTCCGGTCATCGA 357
Query 348 GGACGAGACCGCAGTCTTTGGCTTTCGAGCATTCGGATAGAGGTTATAATCATCATCACT 407
| ||||||| ||||||||||||||||||||||||||||||| | | |||||||||
Sbjct 358 G--CGAGACCTCAGTCTTTGGCTTTCGAGCATTCGGATAGAGCTGCG--T-ATCATCACT 412
Query 408 CGGAGAGGTTTTCGTCGCAATTGATTTCTCCACCTTCACCATTGCCTCTGGATTACACAC 467
|||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 413 TGGAGAGATTTTCGTCGCAATTGATTTCTCCACCTTCACCACTGCCTCTGGATTACACAC 472
Query 468 AAGAGCCACCTCCACCAGGAGTATCAAATGGAGCTAGTTTGGAGTATAGTAGAAGGGTTC 527
|||| |||||||||||||||||||| |||||||| |||||||||||||||||||| ||||
Sbjct 473 AAGAACCACCTCCACCAGGAGTATCGAATGGAGCAAGTTTGGAGTATAGTAGAAGAGTTC 532
Query 528 TGGGTTCGGCACTAGATAGTATCAACCATTCAAGACCACGTCGCTACTGAACCAGTGATA 587
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 533 TTGGTTCGGCACTAGATAGTATCAACCATTCAAGACCACGTCGCTACTGAACCAGTGACA 592
Query 588 AACACTTGTTTTTCT 602
| |||||| | ||||
Sbjct 593 A-CACTTGCTCTTCT 606
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33305239461
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5