BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489863
Length=715
Score E
Sequences producing significant alignments: (Bits) Value
AT4G10150.1 | Symbols: | RING/U-box superfamily protein | chr4... 1074 0.0
AT4G10160.1 | Symbols: | RING/U-box superfamily protein | chr4... 737 0.0
> AT4G10150.1 | Symbols: | RING/U-box superfamily protein | chr4:6328136-6329589
FORWARD LENGTH=742
Length=742
Score = 1074 bits (581), Expect = 0.0
Identities = 673/717 (94%), Gaps = 7/717 (1%)
Strand=Plus/Plus
Query 1 ATGTCTTACAGTGACCCAAACCAAAACCCAATTCCAGAAACTTACGCTCCATCGAACTCA 60
||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 1 ATGTCTTACAGTGACCCAAACCAAAACCCGATTCCAGAAACTTACGCTCCATCAAACTCA 60
Query 61 ACTGAATCCGAGAAACTAAAACTTTACCAAGCTTTTATCTTCTCTGTTCCAATCTGTTTC 120
|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 ACTGAATCAGAGAAACTGAAACTTTACCAAGCTTTTATCTTCTCTGTTCCAATCTGTTTC 120
Query 121 ACATTCATCGTCCTCTTCGTTCTTTACCTCATTTACCTTCGACGAAACAGCACCACCAAC 180
||||||||||| ||||||||||||||| ||||||||||||| |||||||||||||||||
Sbjct 121 ACATTCATCGTTCTCTTCGTTCTTTACGTCATTTACCTTCGTCGAAACAGCACCACCAAT 180
Query 181 GTCGATTGGTCTTCTCTTGGAATGCGTGGTGGCATCTTCGTGCCCACCAACAACAATCTC 240
|| ||||||||||||||||| ||||||||||| | ||| || ||||||||||||||||||
Sbjct 181 GTTGATTGGTCTTCTCTTGGCATGCGTGGTGGTACCTTTGTCCCCACCAACAACAATCTC 240
Query 241 TCAACGGCTGAATTAGGACTGAGCAAAGATGTAAGAGAGATGCTTCCCATTGTCATCTAC 300
|||||||||||||||||||||||||||||| | |||||||||||||| |||||||||||
Sbjct 241 TCAACGGCTGAATTAGGACTGAGCAAAGATATTAGAGAGATGCTTCCTGTTGTCATCTAC 300
Query 301 AAGGAGAGTTTCACAGTCAAAGATTCACAATGTTCAGTGTGTCTTGGGGACTACCAAGCA 360
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 AAGGAGAGTTTCATAGTCAAAGATTCACAATGTTCAGTGTGTCTTGGGGACTACCAAGCA 360
Query 361 GAAGAGAAACTCCAACAAATGCCAGCATGTGGGCACACTTTTCACATGGAGTGTATTGAT 420
|||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||
Sbjct 361 GAAGAGAAACTCCAACAAATGCCATCATGTGGGCACACTTTTCACATGGAATGTATTGAT 420
Query 421 CGT-TGGCTCACATCACACACAACTTGCCCTCTTTGTCGTCTCTCTCTTATCCTCAAACC 479
| | |||||||||||||||||||| |||||||||||||||||||||||||||| ||||||
Sbjct 421 C-TATGGCTCACATCACACACAACATGCCCTCTTTGTCGTCTCTCTCTTATCCCCAAACC 479
Query 480 GTCCCTAGACCTGTCCCAGCAAACCCCAGAGATAGTCTCTCCCATAGAAAACTTTAATGG 539
|||||||||||||||||| |||| | ||||||| |||||| |||||||||||| ||||||
Sbjct 480 GTCCCTAGACCTGTCCCATCAAAGCACAGAGATTGTCTCTTCCATAGAAAACTCTAATGG 539
Query 540 AGGAGAAGCTTCGGCTCAACCAGATTCCCAGTCAACAACCGAAGCAATAAGTCACATCGA 599
|||||||||||| |||||||||||||||||||| ||||||||||||||||||||| |||
Sbjct 540 AGGAGAAGCTTCAACTCAACCAGATTCCCAGTCAGCAACCGAAGCAATAAGTCACACCGA 599
Query 600 TGATGGCCAAGAAGGTAACCGAGATAGTCAAGAGGTCTCTAAGGA-ACCGGCCGAAGAGA 658
||||| | ||||||||||||||||||||||||||||||||||||| || || ||||||
Sbjct 600 TGATGTCGAAGAAGGTAACCGAGATAGTCAAGAGGTCTCTAAGGAGAC-GG---AAGAGA 655
Query 659 ATGACCCAAACAGCGTAGGGACATCTGATGGTTGTCGTACTTGTAGACTTGGTTAAA 715
|||||| |||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 656 ATGACCGAAACAGCGTAGGGACATCTGATGGTTGTTGTACTTGTAGACTTGGTTAAA 712
> AT4G10160.1 | Symbols: | RING/U-box superfamily protein | chr4:6336023-6337332
FORWARD LENGTH=709
Length=709
Score = 737 bits (399), Expect = 0.0
Identities = 592/680 (87%), Gaps = 33/680 (5%)
Strand=Plus/Plus
Query 39 AACTTACGCTCCATCGAACTCAACTGAATCCGAGAAACTAAAACTTTACCAAGCTTTTAT 98
||||||| |||||||||||||||||||||| ||| ||| ||| |||| | | |||||
Sbjct 21 AACTTACATTCCATCGAACTCAACTGAATCCCAGATACTGAAA-TTTA-C--G--TTTAT 74
Query 99 CTTCTCTGTTCCAATCTGTTTCACATTCATCGTCCTCTTCGTTCTTTACCTCATTTACCT 158
| ||| ||| ||||||||| ||| ||| ||||||||| |||||||||| | | | | |
Sbjct 75 CGTCTGTGTGCCAATCTGTGTCATATTAATCGTCCTCCTCGTTCTTTA--T-A--T-CAT 128
Query 159 TCGACGAAACAGCACCACCAACGTCGATTGGTCTTCTCTTGGAATGCGTGGTGGCATCTT 218
|| |||||||||| |||||||| ||||||||||||| | |||||| |||
Sbjct 129 GCGTCGAAACAGCAATACCAACGTTGATTGGTCTTCTC------T---TGGTGG---CTT 176
Query 219 CGTGCCCACCAACAACAATCTCTCAACGGCTGAATTAGGACTGAGCAAAGATGTAAGAGA 278
||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 177 CGTGCCCACCAACAATAATCTCTCAACGGCTGAATTAGGACTGAGCAAAGACATAAGAGA 236
Query 279 GATGCTTCCCATTGTCATCTACAAGGAGAGTTTCACAGTCAAAGATTCACAATGTTCAGT 338
||||||||||||||| |||||||||||||||||||| ||||| ||| |||||||||||||
Sbjct 237 GATGCTTCCCATTGTTATCTACAAGGAGAGTTTCACTGTCAACGATACACAATGTTCAGT 296
Query 339 GTGTCTTGGGGACTACCAAGCAGAAGAGAAACTCCAACAAATGCCAGCATGTGGGCACAC 398
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 297 GTGTCTTGGGGACTACCAAGCAGAAGAGAAACTCCAACAAATGCCATCATGTGGGCACAC 356
Query 399 TTTTCACATGGAGTGTATTGATCGT-TGGCTCACATCACACACAACTTGCCCTCTTTGTC 457
||| |||||||| |||||||||| | ||||||||||| |||||||| |||||||||||||
Sbjct 357 TTTCCACATGGAATGTATTGATC-TATGGCTCACATCGCACACAACATGCCCTCTTTGTC 415
Query 458 GTCTCTCTCTTATCCTCAAACCGTCCCTAGACCTGTCCCAGCAAACCCCAGAGATAGTCT 517
||||||| ||||||| |||||||||| ||||||||||||| |||| | |||||| || |
Sbjct 416 GTCTCTCCCTTATCCCCAAACCGTCCGTAGACCTGTCCCATCAAAGCATAGAGATTGTAT 475
Query 518 CTCCCATAGAAAACTTTAATGGAGGAGAAGCTTCGGCTCAACCAGATTCCCAGTCAACAA 577
|| ||||||||||| ||| |||||||||||||| |||||||||||||||||||| |||
Sbjct 476 CTTCCATAGAAAACACTAACGGAGGAGAAGCTTCAACTCAACCAGATTCCCAGTCAGCAA 535
Query 578 CCGAAGCAATAAGTCACATCGATGATGGCCAAGAAGGTAACCGAGATAGTCA-AGAGGTC 636
|||||||||||| |||||||||||||| | |||||||||||||||||||| | |||||||
Sbjct 536 CCGAAGCAATAATTCACATCGATGATGTCGAAGAAGGTAACCGAGATAGT-ATAGAGGTC 594
Query 637 -TCTAAGGAACCGGCCGAAGAGAATGACCCAAACAGCGTAGGGACATCTGATGGTTGTCG 695
| ||||||| ||| ||||||||||| |||||||||||||||||||||||||||| |
Sbjct 595 GT-TAAGGAATCGG---AAGAGAATGACAGAAACAGCGTAGGGACATCTGATGGTTGTTG 650
Query 696 TACTTGTAGACTTGGTTAAA 715
|| ||||||||||||| |||
Sbjct 651 TAGTTGTAGACTTGGTGAAA 670
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34661561430
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5