BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489864
Length=1120
Score E
Sequences producing significant alignments: (Bits) Value
AT4G10170.1 | Symbols: | SNARE-like superfamily protein | chr4... 1546 0.0
AT1G33475.1 | Symbols: | SNARE-like superfamily protein | chr1... 244 1e-63
> AT4G10170.1 | Symbols: | SNARE-like superfamily protein | chr4:6344331-6345537
FORWARD LENGTH=1207
Length=1207
Score = 1546 bits (837), Expect = 0.0
Identities = 993/1064 (93%), Gaps = 28/1064 (3%)
Strand=Plus/Plus
Query 1 AAAAGCTCACACATGACCCAAGAACCCT----AG-AGAAG-AG-GGAATGAGAGAATTCA 53
|||||||||||||||||||||||||||| || ||||| || ||||||||||||||||
Sbjct 26 AAAAGCTCACACATGACCCAAGAACCCTAGAGAGAAGAAGAAGAGGAATGAGAGAATTCA 85
Query 54 TCCTCGATTTTGAATACATCGCCGAAGGATTTTGTTGGTActttcttcttctctttgatt 113
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 86 TCCTCGATTTTGAAGACATCGCCGAAGGATTTTGTTGGTACTTTCTTCTTCTCTTTGACT 145
Query 114 ttctctttgacttcttcatctcaatttctctcttcttctttgctctaatcacaaacttct 173
|||||| ||||| | |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 146 TTCTCTCTGACTCCATCATCTCAATTTCTCTCTTCTTCTTTGCTCTAATCACAGACTTCT 205
Query 174 cctctttcctcttctgtctcAATTTGATTGCTT--aaaaacaaaaaaGACAATATGGGTT 231
| ||||||||||||||||||||||||||| ||| |||||||||||| | || |||||||
Sbjct 206 CTTCTTTCCTCTTCTGTCTCAATTTGATTTCTTAAAAAAACAAAAAA-A-AAGATGGGTT 263
Query 232 TAATCAAGAACACAGTTCATTACTGTTGTGTCTCAAGAGACAATCAGATTCTTTACTCTT 291
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 264 TAATCAAGAACACAGTTCATTACTGTTGTGTCTCAAGAGACAATCAGATTCTTTACTCTT 323
Query 292 ACAACGGTGGAGACCAAACCAACGAGAGTCTTGCTGCTTTGTGTTTAGAAAAGTCTCCTC 351
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 324 ACAACGGTGGAGACCAAACCAACGAGAGTCTTGCTGCTCTGTGTTTAGAAAAGTCTCCTC 383
Query 352 CTTTTCACAATTGGTACTTTGAAACTATTGGGAAGAGGAGATTTGGGTTTTTATTTGGAG 411
||||||| | ||||||||||||||||||||| || || ||||||||||||||| ||||||
Sbjct 384 CTTTTCATACTTGGTACTTTGAAACTATTGGTAAAAGAAGATTTGGGTTTTTAATTGGAG 443
Query 412 ATGGGTTTGTTTATTTCGCCATTGTTGATGAGGTTTTGAAGAGATCTAGTGTTCTTAAGT 471
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 444 ATGGGTTTGTTTATTTCGCCATTGTTGATGAGGTTTTGAAGAGATCTAGTGTTCTTAAGT 503
Query 472 TTCTTGAACATTTGAGAGATGAATTCAAGAAAGCTGCTAGGAATAATTCTAGAGGAAGTT 531
||||||||||||||||||||||||| ||||||||||||||| | ||||||||||||||||
Sbjct 504 TTCTTGAACATTTGAGAGATGAATTTAAGAAAGCTGCTAGGGAGAATTCTAGAGGAAGTT 563
Query 532 TTACTGCTTTGATTGGTTCTATTAATGTTGAAGATCAGCTTGTTCCTGTTGTTGCTAGAC 591
|||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 564 TTACTGCTATGATTGGTTCTATTAATGTTGAAGATCAGCTTGTTCCTGTTGTTACTAGAC 623
Query 592 TTATAGCTTCCCTTGAACGTGTTGCTGTTGAG-AGTACTAACAATGAATTGAAGAGTA-- 648
|||||||||| |||||||||||||||| ||| |||| ||||||||||||||||||||
Sbjct 624 TTATAGCTTCTCTTGAACGTGTTGCTGA-GAGTAGTAGTAACAATGAATTGAAGAGTAGT 682
Query 649 A-TCTTGGTGAACAGAGCGAAGTTTCGAATTCGACTAAAGCTCCGTTGTTGGGGAGGTCA 707
| |||||||||||| ||||||| ||||||||| ||||||||||||||||||||||||| |
Sbjct 683 AATCTTGGTGAACAAAGCGAAGGTTCGAATTCTACTAAAGCTCCGTTGTTGGGGAGGTTA 742
Query 708 AGTAAGCAAGAGAAGAAGAAAGGGAAAGATCATGTGATTGAGGTTGAAGAACACAGGAAG 767
|||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct 743 AGTAAGCAAGAGAAGAAGAAAGGGAAAGATCATGTGATTGAGCTTGAGGAACACAGGAAG 802
Query 768 TCTAATGATAG-GGAGAACAGAACCGATGCTTCAGCGGGAGCGGGAGCAGGAACGTCGTT 826
||||||||||| || ||||| |||||||| |||||||||||| ||| | |||||||
Sbjct 803 TCTAATGATAGAGG-GAACATAACCGATGATTCAGCGGGAGCTGGA--A----CGTCGTT 855
Query 827 GGAGAAGGAGTGTGTATCGAGTAGAGGACGTTCTGTTACTCAAAGCTTTGAATGGAAATG 886
||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 856 GGAGAAGGAGTGTGTGTCGAGTAGTGGACGTTCTGTTACTCAAAGCTTTGAATGGAAATG 915
Query 887 GCGGCGGTTAGTTCAGATTGTTCTTGCTATTGATGCAGCTATCTGCTTGACACTCTTTGG 946
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 916 GCGGCGGTTAGTTCAGATTGTTCTTGCTATTGATGCAGCTATTTGCTTGACACTGTTTGG 975
Query 947 TATTTGGTTGGCTATATGTCGAGGTATCGAGTGTACACGTTCGTGATTGTAAA-ACA-AA 1004
||||||||||||||||||||| |||||||||||||||||||||||||||| | ||| ||
Sbjct 976 TATTTGGTTGGCTATATGTCGGGGTATCGAGTGTACACGTTCGTGATTGTGCAGACAGAA 1035
Query 1005 ACTCGGATATACACGATATCGATTCTTTACATTCCCTTGTGCAT 1048
| ||||||| ||| || ||||||||||||||||||||||||||
Sbjct 1036 AATCGGATAAACA-GAG-TCGATTCTTTACATTCCCTTGTGCAT 1077
> AT1G33475.1 | Symbols: | SNARE-like superfamily protein | chr1:12147276-12148249
REVERSE LENGTH=974
Length=974
Score = 244 bits (132), Expect = 1e-63
Identities = 263/324 (81%), Gaps = 18/324 (6%)
Strand=Plus/Plus
Query 221 CAATATGGGTTTAAT-CAAGAACACAGTTCATTACTGTTGTGTCTCAAGAGACAATCAGA 279
||| ||||||| ||| ||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 56 CAACATGGGTTCAATCCAA-AACACAGTTCACTACTGTTGTGTCTCAAGAGACAATCAGA 114
Query 280 TTCTTTACTCTTACAACGGTG--G-AGACCA----AACCAACGAGAGTCTTGCTGCTTTG 332
|| | ||| |||||||| || | |||||| ||| |||||||||||||| || ||
Sbjct 115 TTATGTACGCTTACAACAATGCCGGAGACCACCGCAAC-AACGAGAGTCTTGCAGCGTTA 173
Query 333 TGTTTAGAAAAGTCTCCTCCTTTTCACAATTGGTACTTTGAAACTATTGGG-AAGAGGAG 391
|| || |||||| |||| ||||||||||| |||||||| ||||| | ||| |||| ||
Sbjct 174 TGCTTGGAAAAGACTCCACCTTTTCACAAGTGGTACTTCGAAACGAG-GGGTAAGAAGAC 232
Query 392 ATTTGGGTTTTT-ATTTGGA-GATGGGTTTGTTTATTTCGCCATTGTTGATGAGGTTTTG 449
||||| || || || | | |||| || ||||||||||||||||||||||| |||||
Sbjct 233 TTTTGGATTCTTGAT--GAAAGATGACTTCGTTTATTTCGCCATTGTTGATGATGTTTTC 290
Query 450 AAGAGATCTAGTGTTCTTAAGTTTCTTGAACATTTGAGAGATGAATTCAA-GAAAGCTGC 508
|||| |||||| |||||| | ||||||||| | |||||||||| || || ||| |||
Sbjct 291 AAGAAATCTAGCGTTCTTGATTTTCTTGAAAAACTGAGAGATGAGTTAAAAGAA-GCTAA 349
Query 509 TAGGAATAATTCTAGAGGAAGTTT 532
|| ||| |||||||||||||||||
Sbjct 350 TAAGAAGAATTCTAGAGGAAGTTT 373
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54919396230
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5