BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg489868

Length=500
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G10240.1 | Symbols:  | B-box zinc finger family protein | ch...   791    0.0  


> AT4G10240.1 | Symbols:  | B-box zinc finger family protein | 
chr4:6368936-6369526 REVERSE LENGTH=520
Length=520

 Score =  791 bits (428),  Expect = 0.0
 Identities = 476/500 (95%), Gaps = 0/500 (0%)
 Strand=Plus/Plus

Query  1    ATGAAGATACAATGTGAAGTGTGCGAGAAGGCTGAAGCAGAAGTACTTTGTTGTTCAGAT  60
            ||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct  1    ATGAAGATACAATGTGAAGTGTGTGAAAAGGCTGAAGCAGAAGTACTTTGTTGTTCAGAT  60

Query  61   GAAGCTGTTCTATGCAAGCCATGTGACATTAAAGTTCATGAAGCTAACAAAATTTTCCAA  120
            |||||||| ||||||||||||||||||||||| |||||||||||||| ||| ||||||||
Sbjct  61   GAAGCTGTACTATGCAAGCCATGTGACATTAAGGTTCATGAAGCTAATAAACTTTTCCAA  120

Query  121  AGACATCACCGAGTCGCCTTACATAAAGATGCATCCTCAGCCACCACAGCCTCTGGAGCT  180
            ||||||||||||||||||||||| ||||||||| |||||||||||||||| |||||||||
Sbjct  121  AGACATCACCGAGTCGCCTTACAAAAAGATGCAGCCTCAGCCACCACAGCTTCTGGAGCT  180

Query  181  CCTCTATGTGATATCTGCCAGGAGAGAAAAGGGTACTTCTTCTGCTTAGAGGACAGAGCA  240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct  181  CCTCTATGTGATATCTGCCAGGAGAGAAAAGGGTACTTCTTCTGCTTAGAGGATAGAGCA  240

Query  241  TTGCTGTGTAATGATTGTGATGGAGCCATTCACACATGCAATTCTCACCAAAGATTTTTA  300
             ||||||| ||||||||||||| |||||||||||| |||||||||||||||||||| |||
Sbjct  241  ATGCTGTGCAATGATTGTGATGAAGCCATTCACACTTGCAATTCTCACCAAAGATTCTTA  300

Query  301  CTTTCTGGAGTACAAGTTTCTGATCAGTCTTTAACTGAAAACTCCGAATGTAGCACTAGT  360
            |||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct  301  CTTTCTGGAGTACAAGTTTCTGATCAGTCTTTGACTGAAAACTCCGAATGCAGCACTAGT  360

Query  361  TTTGGCTCTGAAACTTGCCAGATTCAGTCAAAAGTCTCTCTGAATAGTCAGTACTCTAGT  420
            ||| |||||||||||| |||||||||||||||||| ||||||||||||||||||||||||
Sbjct  361  TTTAGCTCTGAAACTTACCAGATTCAGTCAAAAGTGTCTCTGAATAGTCAGTACTCTAGT  420

Query  421  GAAGAAACTGAAGCTGGAAACTCAGGGGAGATAGTACACAAGAATCCTTCTGTAATCTTA  480
            || ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct  421  GAGGAAACTGAAGCTGGAAACTCAGGTGAGATAGTACACAAGAATCCTTCTGTAATCTTA  480

Query  481  AGACCTTAGAGATACACACA  500
            || ||||||||||| |||||
Sbjct  481  AGTCCTTAGAGATATACACA  500



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23861219825


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5