BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489869
Length=827
Score E
Sequences producing significant alignments: (Bits) Value
AT4G10250.1 | Symbols: ATHSP22.0 | HSP20-like chaperones superf... 1013 0.0
> AT4G10250.1 | Symbols: ATHSP22.0 | HSP20-like chaperones superfamily
protein | chr4:6370343-6371291 FORWARD LENGTH=949
Length=949
Score = 1013 bits (548), Expect = 0.0
Identities = 601/627 (96%), Gaps = 2/627 (0%)
Strand=Plus/Plus
Query 106 TTTGGTTTCAACCTTCTTCAAGAAAAT-CAAACCACTAACCATGATGAAGCATTTGCTAA 164
||||||||||||||||| ||| |||| |||| ||||||||||||||||||| |||||||
Sbjct 155 TTTGGTTTCAACCTTCTACAA-TAAATCCAAATCACTAACCATGATGAAGCACTTGCTAA 213
Query 165 GCATCTTCTTCATAGGAGCTTTGTTACTTGGAAACATCAAAACAAGTGAAGGATCTTTGT 224
||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 214 GCATCTTCTTCATAGGAGCTTTGTTGCTTGGAAACATCAAAACAAGTGAAGGGTCTTTGT 273
Query 225 CTTCTGCACTTGAAACTACTCCAGGCAGCTTGCTATCTGATCTCTGGCTAGACCGGTTCC 284
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 274 CTTCTGCACTTGAAACTACTCCAGGCAGCTTGCTATCCGATCTCTGGCTAGACCGGTTCC 333
Query 285 CTGATCCATTCAAGATCTTGGAGAGAATCCCATTAGAACTCGAGAGGGACACGAGTGTGG 344
|||||||||||||||||||||||||||||||||||| ||||||||||||||| || ||||
Sbjct 334 CTGATCCATTCAAGATCTTGGAGAGAATCCCATTAGGACTCGAGAGGGACACAAGCGTGG 393
Query 345 CTCTGTCTCCAGCGAGAGTAGACTGGAAAGAAACAGCAGAAGGGCATGAGATAATGCTCG 404
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 394 CTCTGTCTCCAGCAAGAGTAGACTGGAAAGAAACAGCAGAAGGGCATGAGATAATGCTCG 453
Query 405 ATATCCCCGGTTTAAAGAAGGATGAAGTAAAGATAGAAGTGGAGGAGAACCGAGTTTTGC 464
||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||| |
Sbjct 454 ATATCCCCGGTTTGAAGAAGGATGAAGTAAAGATAGAAGTGGAGGAGAACGGAGTTTTAC 513
Query 465 GAGTCAGTggagagaggaaaagagaagaagagaagaaaggagatcaatggcatagagtgg 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 514 GAGTCAGTGGAGAGAGGAAAAGAGAAGAAGAGAAGAAAGGAGATCAATGGCATAGAGTGG 573
Query 525 agagaTCATATGGAAAGTTCTGGAGACAGTTCAAGCTACCTGATAATGTGGATACGGAAT 584
|||||||||||||||| |||||||||||||||||||||||||||||||| |||| |||||
Sbjct 574 AGAGATCATATGGAAAATTCTGGAGACAGTTCAAGCTACCTGATAATGTAGATATGGAAT 633
Query 585 CAGTCAAGGCCAAGCTAGAGAATGGTGTGCTTACTATTAACCTCACAAAACTATCTCCTG 644
|||||||||||||||| |||||||||||||| |||||||||||||| |||||||||||||
Sbjct 634 CAGTCAAGGCCAAGCTTGAGAATGGTGTGCTCACTATTAACCTCACGAAACTATCTCCTG 693
Query 645 AAAAGGTCAAGGGTCCAAGGGTTGTTAACATTGCAGCTGAAGAAGACCAAACTGCAAAAA 704
|||| || ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 694 AAAAAGTTAAGGGTCCAAGAGTTGTTAACATTGCAGCTGAAGAAGACCAAACTGCAAAAA 753
Query 705 TCAGCTCTTCTGAATCCAAGGAACTCT 731
||||||||||||||||||| |||||||
Sbjct 754 TCAGCTCTTCTGAATCCAAAGAACTCT 780
Score = 137 bits (74), Expect = 1e-31
Identities = 100/111 (90%), Gaps = 7/111 (6%)
Strand=Plus/Plus
Query 2 TCTCTGCAAAACTCTAGC---A-AAAGATATTTCAAGAAACTTCTTCATTCTTCATACAA 57
|||||||||||||||| | | |||||||||||||||||||||||||||||||||||||
Sbjct 14 TCTCTGCAAAACTCTACCAAAAGAAAGATATTTCAAGAAACTTCTTCATTCTTCATACAA 73
Query 58 TGTGTAT-ATATA--CACCAGAGAATTGAGACTTATCTTCATAGAAAACAA 105
||||||| ||||| |||||||||||||||||| | | |||||||||||||
Sbjct 74 TGTGTATTATATATACACCAGAGAATTGAGACTAACCATCATAGAAAACAA 124
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40287785894
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5