BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489873
Length=672
Score E
Sequences producing significant alignments: (Bits) Value
AT4G10300.1 | Symbols: | RmlC-like cupins superfamily protein ... 854 0.0
> AT4G10300.1 | Symbols: | RmlC-like cupins superfamily protein
| chr4:6384462-6386189 FORWARD LENGTH=750
Length=750
Score = 854 bits (462), Expect = 0.0
Identities = 619/690 (90%), Gaps = 30/690 (4%)
Strand=Plus/Plus
Query 1 CTGAAAACAATTAAATTTAAA-GGAATGCAAAAATGGGCTGCATCGGTCTTGTGAATTTA 59
|||| ||||| | || ||||| |||| ||||||||||||||||||||| |||||||| ||
Sbjct 71 CTGAGAACAACT-AAGTTAAAGGGAAAGCAAAAATGGGCTGCATCGGTGTTGTGAATGTA 129
Query 60 ACAAGCATCAATCCATATCTCACAAGAACATCAAACAAACCCTACAATTCAAGAAGAGCA 119
|||||||| ||||||||||||||||||| |||||||||||||||||||||||||||| ||
Sbjct 130 ACAAGCATAAATCCATATCTCACAAGAAGATCAAACAAACCCTACAATTCAAGAAGACCA 189
Query 120 TCATCCATGGCTGCTGCGATTAGAGCTGAGTCAGTAGCTACTGAGAAATTAGGGATTACA 179
||||||||||||||||||||||||||| | ||| |||||||||||||||||||||||
Sbjct 190 TCATCCATGGCTGCTGCGATTAGAGCT--G--AGT--CTACTGAGAAATTAGGGATTACA 243
Query 180 ATTGAGAAGAATCCAT-CTGAGTCCAAACTCACCCAACTCGGTGTTCGTAATTGGCCCAG 238
||||| |||||||| | ||||||||||||| ||||||||||||||||||| ||||||||
Sbjct 244 ATTGAAAAGAATCC-TCCTGAGTCCAAACTAACCCAACTCGGTGTTCGTAGTTGGCCCAA 302
Query 239 GTGGGGTTGTCCTCCAAGCAAGTTTCCATGGACTTATAGTGCAAAGGAGACTTGTTATCT 298
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
Sbjct 303 GTGGGGTTGTCCTCCAAGCAAGTTTCCATGGACTTACAGTGCAAAGGAGACTTGTTATTT 362
Query 299 GCTAGAAGGCAAAGTGAAAGTGTACCCTGATGGTTCCGATGAAGGCGTAGAGATCGAAGC 358
||| |||| |||||||||||||||||| |||| ||||||||||||||||||||||||||
Sbjct 363 ACTACAAGGAAAAGTGAAAGTGTACCCTAATGGATCCGATGAAGGCGTAGAGATCGAAGC 422
Query 359 AGGCGACTTTGTTGTCTTCCCTAAAGGAATGAGTTGCACTTGGGATGTCTCTGTTGCTGT 418
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 423 AGGCGACTTTGTTGTTTTCCCTAAAGGAATGAGTTGCACTTGGGATGTCTCTGTTGCTGT 482
Query 419 TGATAAACATTACCAATTCGAATAAATGGCTGCTATCAATCTCTGCTCTACATATTCGTG 478
||||||||||||||||||||| | ||||||||||||||||||||||||||| ||||||||
Sbjct 483 TGATAAACATTACCAATTCGAGTGAATGGCTGCTATCAATCTCTGCTCTACGTATTCGTG 542
Query 479 TATTCGATAGGACTTGACTATCTTTGTATGTTGATGAATACTTAGTTTT-G-TC-TGTCA 535
|||||||||||||||||| ||||||||||||||||| ||||||| ||| | | ||| |
Sbjct 543 TATTCGATAGGACTTGACCATCTTTGTATGTTGATGGATACTTACTTTAAGCTTGTGTGA 602
Query 536 TA-TATATTTTAGCTTTAGTGGAAACAGA--A-TCAT----GGACGCATTATCCCATT-A 586
| | | ||||| |||||||||||| ||| | |||| |||||||||||| |||| |
Sbjct 603 -AGT-T-TTTTA-CTTTAGTGGAAATAGAGGAGTCATATATGGACGCATTATCTCATTCA 658
Query 587 ATATCAAAGTCATTTGAAGTTCAATACAATAACAT--ATAGTTTTTCCTATCGAAAAGTA 644
| | |||||||||| ||||||| |||||||||||| ||||| ||| || ||||||||||
Sbjct 659 ACACCAAAGTCATTCGAAGTTCGATACAATAACATGTATAGTGTTTACTGTCGAAAAGTA 718
Query 645 --TAATTGAAAATACAAGTGATATTCACGT 672
||||||| |||| |||||||||||||||
Sbjct 719 AATAATTGATAATAGAAGTGATATTCACGT 748
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32501493109
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5