BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg489874 Length=1686 Score E Sequences producing significant alignments: (Bits) Value AT4G10310.1 | Symbols: HKT1, ATHKT1 | high-affinity K+ transpor... 2307 0.0 > AT4G10310.1 | Symbols: HKT1, ATHKT1 | high-affinity K+ transporter 1 | chr4:6391984-6395877 FORWARD LENGTH=1755 Length=1755 Score = 2307 bits (1249), Expect = 0.0 Identities = 1572/1719 (91%), Gaps = 57/1719 (3%) Strand=Plus/Plus Query 1 GCTTAAACCGACTAGAGAACTAAAATGGACAGAGTTGCGGCAAAAATAGCTAAAATCCGT 60 ||||||||||||| ||||||||||||||||||||| | |||||||||||| ||||||||| Sbjct 1 GCTTAAACCGACTCGAGAACTAAAATGGACAGAGTGGTGGCAAAAATAGCAAAAATCCGT 60 Query 61 TCGCAGCTTA-TGAAATCTA-GTTCACTATTCTTACTCTATTTCATCTACTTCTTGCTCT 118 |||||||||| | |||| || ||||||||||||| || || ||||||||||||||| ||| Sbjct 61 TCGCAGCTTACT-AAAT-TACGTTCACTATTCTTCCTTTACTTCATCTACTTCTTGTTCT 118 Query 119 TCTCCTTTTTAGGGTTCTTGGCTCTAAAGATCACAAAGCCAAGAACCACTTCACGTCCTC 178 |||||||||||||||| ||||| || |||||||||||||||||||||||||||||||||| Sbjct 119 TCTCCTTTTTAGGGTTTTTGGCACTCAAGATCACAAAGCCAAGAACCACTTCACGTCCTC 178 Query 179 ATGACTTGGACCTTTTCTTCACTTCTGTCTCTGCCATCACTGTCTCTTCCATGTCTACCG 238 ||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 179 ATGACTTTGACCTTTTCTTCACTTCTGTCTCTGCCATCACCGTCTCTTCCATGTCTACCG 238 Query 239 TCGACATGGAAGTCTTCTCCAACACCCAACTTATCTTCCTCACTATCCTCATGTTCCTTG 298 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 239 TCGACATGGAAGTCTTCTCCAACACCCAACTTATCTTCCTCACTATCCTCATGTTCCTCG 298 Query 299 CCGGCGAAATCTTCACCTCCTTTCTCAACCTCTACTTTCAAC-ATTTCACCAACTTCGTC 357 ||||||||||||||||||||||||||||||||| || | |||||||||| |||||| Sbjct 299 GTGGCGAAATCTTCACCTCCTTTCTCAACCTCTAC-GTCTCCTATTTCACCAAGTTCGTC 357 Query 358 TTCCCTCACAACAAGATTAGACATCTTGTGGGATC-T-T--TT---A-A----C-TC--G 402 |||||||| ||||||||||||||| || ||||||| | | || | | | || | Sbjct 358 TTCCCTCATAACAAGATTAGACATATTTTGGGATCTTATAATTCGGACAGTTCCATCGAG 417 Query 403 GACCGTTGTGACCTCGAGACTGTTACTGATCATCGCGAGGGTCTTAGCAAGATCGAAGAA 462 || || |||||| | ||||||||||||||| ||||||||||||||| ||||||||| ||| Sbjct 418 GATCGCTGTGACGTTGAGACTGTTACTGATTATCGCGAGGGTCTTATCAAGATCGATGAA 477 Query 463 AGGGCATCTAAGTGTTTGTACTCGGTGGTTCTTAGTTACCATCTTG-TATCAAACCTAGT 521 |||||||||||||| ||||||||||||||||||||||||||||||| || | |||||||| Sbjct 478 AGGGCATCTAAGTGCTTGTACTCGGTGGTTCTTAGTTACCATCTTGTTA-CTAACCTAGT 536 Query 522 TGGCTCTGTGTTGCTTCTTGTGTACGTAAACTTTGTTAAAACGGCGAGAGATGTTCTTAG 581 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 537 TGGCTCTGTGTTGCTTCTTGTGTACGTAAATTTTGTTAAAACGGCGAGAGATGTTCTTAG 596 Query 582 CTCAAAAGATATCTCACCTCTCACTTTCTCCGTCTTCACAACTGTTTCCACGTTTGCAAA 641 || ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 597 TTCCAAAGAAATCTCACCTCTCACTTTCTCCGTCTTCACAACTGTTTCCACGTTTGCAAA 656 Query 642 CTGCGGATTCGTCCCCACGAATGAGAATATGATCATCTTTCGCAAGAACTCTGGACTCAT 701 ||||||||| ||||||||||||||||| |||||||||||||||||||||||||| ||||| Sbjct 657 CTGCGGATTTGTCCCCACGAATGAGAACATGATCATCTTTCGCAAGAACTCTGGTCTCAT 716 Query 702 CTGGCTCTTAATCCCTCAAGTACTGATGGGAAACACTTTGTTCCCTTGCTTCTTGGCTTT 761 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 717 CTGGCTCCTAATCCCTCAAGTACTGATGGGAAACACTTTGTTCCCTTGCTTCTTGGTTTT 776 Query 762 GCTCATATGGGGACTTTATAAGATCACAAAGCGTGACGAGTTTGGTTACATTCTAAAGAA 821 ||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| Sbjct 777 GCTCATATGGGGACTTTATAAGATCACAAAGCGTGACGAGTATGGTTACATTCTCAAGAA 836 Query 822 CCaaaaaaaGATGGGATACTCTCATCTACTCTCCGTACGTCTATGTGTTCTTCTTGGAGT 881 ||| || |||||||||||||||||||||||||| || ||||||||||||||||||||||| Sbjct 837 CCACAATAAGATGGGATACTCTCATCTACTCTCGGTTCGTCTATGTGTTCTTCTTGGAGT 896 Query 882 AACGGTGCTAGGGTTTCTAATAATACAGCTTCTTTTCTTCTGTGCCTTTGAGTGGACCTC 941 ||||||||||||||||| ||||||||||||||||||||||| |||||||| |||||||| Sbjct 897 GACGGTGCTAGGGTTTCTGATAATACAGCTTCTTTTCTTCTGCGCCTTTGAATGGACCTC 956 Query 942 TGAGTCTCTAGAAGGAATGAGTTCGTACGAGAAGTTGGTTGGGTCGTTGTTTCAAGTGGT 1001 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 957 TGAGTCTCTAGAAGGAATGAGTTCGTACGAGAAGTTGGTTGGATCGTTGTTTCAAGTGGT 1016 Query 1002 GAATTCGCGACATACCGGAGAAACTATTGTTGACCTCTCTACACTTTCCCCAGCCATCTT 1061 |||||||||||| |||||||||||||| || ||||||||||||||||||||||| ||||| Sbjct 1017 GAATTCGCGACACACCGGAGAAACTATAGTAGACCTCTCTACACTTTCCCCAGCTATCTT 1076 Query 1062 GGTACTCTTTATTCTTATGATGTATCTTCCTTCATACACATTATTTATGCCGTTGACGGA 1121 ||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||| Sbjct 1077 GGTACTCTTTATTCTTATGATGTATCTTCCTCCATACACTTTATTTATGCCGTTGACGGA 1136 Query 1122 ACAAAAGACGATAGAGAAAGAAGGAG-A--TGATGATTCCGGAAATGGAAAGAAAGTGAC 1178 |||||||||||||||||||||||||| | ||||||||||| ||||||||||||||| | Sbjct 1137 ACAAAAGACGATAGAGAAAGAAGGAGGAGATGATGATTCCGAAAATGGAAAGAAAGTTAA 1196 Query 1179 AAAGAGTGGACTCTTCGTGTCACAACTTTCCTTTTTGACGATATGCATCTTTCTCATTTC 1238 ||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 1197 AAAGAGTGGACTCATCGTGTCACAACTTTCCTTTTTGACGATATGTATCTTTCTCATTTC 1256 Query 1239 GATCACCGAAAGGCAAAAACTACGACGCGATCC-ACTCAATTTCAATGTCCTTAACATCA 1297 ||||||||||||||||| |||| ||| ||||| | | |||||||| ||||||||||||| Sbjct 1257 AATCACCGAAAGGCAAAATCTACAACGTGATCCGA-TAAATTTCAACGTCCTTAACATCA 1315 Query 1298 CTCTCGAAGTTATCAGTGCATATGGAAACGTGGGTTTCACTACCGGGTACAGCTGTGAAC 1357 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 1316 CTCTCGAAGTTATCAGTGCATATGGAAACGTTGGTTTCACTACCGGGTACAGCTGTGAAC 1375 Query 1358 GGCGTCTGGACATCAGCGACGGTAGCTGCAAAGACGCGGGTTATGGATTTGCAGGACGAT 1417 ||||| ||||||||||||| ||| |||||||||||||| ||||||| ||||||||||||| Sbjct 1376 GGCGTGTGGACATCAGCGATGGTGGCTGCAAAGACGCGAGTTATGGGTTTGCAGGACGAT 1435 Query 1418 GGAGTCCTGTCGGAAAATTCGTACTAATAATAGTAATGTTTTATGGGAGGTTTAAGCAGT 1477 ||||||| | ||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 1436 GGAGTCCAATGGGAAAATTCGTACTAATAATAGTAATGTTTTATGGTAGGTTTAAGCAGT 1495 Query 1478 TCACAGCCAAATCTGGCCGAGCATGGATACTTTATCCCTCCTCTTCCTAACATAT--C-A 1534 ||||||||||||||||||| |||||||| ||||| ||||| |||||||||||||| | | Sbjct 1496 TCACAGCCAAATCTGGCCGCGCATGGATTCTTTACCCCTCGTCTTCCTAACATATTTCGA 1555 Query 1535 T-ATATA-AA-TGTTATATAAAAATTAGTCTCGTGTGTCACTTTAGTATTCCTTTTCTGT 1591 | ||||| || |||||||| |||||||||| | | | | | || ||||||||||||| Sbjct 1556 TCATATATAAATGTTATATTAAAATTAGTCAC-T-T-T---T--AGCATTCCTTTTCTGT 1607 Query 1592 G--TGATGTACAATAAGTTTGTATGTAGGTTT-CATCATCGTTAATAATATTAACGATTC 1648 | ||||||||||||||||||||||||| ||| ||||||||||||| | | | Sbjct 1608 GAGTGATGTACAATAAGTTTGTATGTAG-TTTGCATCATCGTTAATC-------C--T-C 1656 Query 1649 GTTAATATTATTA-AATGTATGAAAATATAATTTAAGGA 1686 ||||||||||| | |||||||||| ||||||| |||||| Sbjct 1657 GTTAATATTATGATAATGTATGAAGATATAATATAAGGA 1695 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 83332904700 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5