BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489874
Length=1686
Score E
Sequences producing significant alignments: (Bits) Value
AT4G10310.1 | Symbols: HKT1, ATHKT1 | high-affinity K+ transpor... 2307 0.0
> AT4G10310.1 | Symbols: HKT1, ATHKT1 | high-affinity K+ transporter
1 | chr4:6391984-6395877 FORWARD LENGTH=1755
Length=1755
Score = 2307 bits (1249), Expect = 0.0
Identities = 1572/1719 (91%), Gaps = 57/1719 (3%)
Strand=Plus/Plus
Query 1 GCTTAAACCGACTAGAGAACTAAAATGGACAGAGTTGCGGCAAAAATAGCTAAAATCCGT 60
||||||||||||| ||||||||||||||||||||| | |||||||||||| |||||||||
Sbjct 1 GCTTAAACCGACTCGAGAACTAAAATGGACAGAGTGGTGGCAAAAATAGCAAAAATCCGT 60
Query 61 TCGCAGCTTA-TGAAATCTA-GTTCACTATTCTTACTCTATTTCATCTACTTCTTGCTCT 118
|||||||||| | |||| || ||||||||||||| || || ||||||||||||||| |||
Sbjct 61 TCGCAGCTTACT-AAAT-TACGTTCACTATTCTTCCTTTACTTCATCTACTTCTTGTTCT 118
Query 119 TCTCCTTTTTAGGGTTCTTGGCTCTAAAGATCACAAAGCCAAGAACCACTTCACGTCCTC 178
|||||||||||||||| ||||| || ||||||||||||||||||||||||||||||||||
Sbjct 119 TCTCCTTTTTAGGGTTTTTGGCACTCAAGATCACAAAGCCAAGAACCACTTCACGTCCTC 178
Query 179 ATGACTTGGACCTTTTCTTCACTTCTGTCTCTGCCATCACTGTCTCTTCCATGTCTACCG 238
||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 179 ATGACTTTGACCTTTTCTTCACTTCTGTCTCTGCCATCACCGTCTCTTCCATGTCTACCG 238
Query 239 TCGACATGGAAGTCTTCTCCAACACCCAACTTATCTTCCTCACTATCCTCATGTTCCTTG 298
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 239 TCGACATGGAAGTCTTCTCCAACACCCAACTTATCTTCCTCACTATCCTCATGTTCCTCG 298
Query 299 CCGGCGAAATCTTCACCTCCTTTCTCAACCTCTACTTTCAAC-ATTTCACCAACTTCGTC 357
||||||||||||||||||||||||||||||||| || | |||||||||| ||||||
Sbjct 299 GTGGCGAAATCTTCACCTCCTTTCTCAACCTCTAC-GTCTCCTATTTCACCAAGTTCGTC 357
Query 358 TTCCCTCACAACAAGATTAGACATCTTGTGGGATC-T-T--TT---A-A----C-TC--G 402
|||||||| ||||||||||||||| || ||||||| | | || | | | || |
Sbjct 358 TTCCCTCATAACAAGATTAGACATATTTTGGGATCTTATAATTCGGACAGTTCCATCGAG 417
Query 403 GACCGTTGTGACCTCGAGACTGTTACTGATCATCGCGAGGGTCTTAGCAAGATCGAAGAA 462
|| || |||||| | ||||||||||||||| ||||||||||||||| ||||||||| |||
Sbjct 418 GATCGCTGTGACGTTGAGACTGTTACTGATTATCGCGAGGGTCTTATCAAGATCGATGAA 477
Query 463 AGGGCATCTAAGTGTTTGTACTCGGTGGTTCTTAGTTACCATCTTG-TATCAAACCTAGT 521
|||||||||||||| ||||||||||||||||||||||||||||||| || | ||||||||
Sbjct 478 AGGGCATCTAAGTGCTTGTACTCGGTGGTTCTTAGTTACCATCTTGTTA-CTAACCTAGT 536
Query 522 TGGCTCTGTGTTGCTTCTTGTGTACGTAAACTTTGTTAAAACGGCGAGAGATGTTCTTAG 581
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 537 TGGCTCTGTGTTGCTTCTTGTGTACGTAAATTTTGTTAAAACGGCGAGAGATGTTCTTAG 596
Query 582 CTCAAAAGATATCTCACCTCTCACTTTCTCCGTCTTCACAACTGTTTCCACGTTTGCAAA 641
|| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 597 TTCCAAAGAAATCTCACCTCTCACTTTCTCCGTCTTCACAACTGTTTCCACGTTTGCAAA 656
Query 642 CTGCGGATTCGTCCCCACGAATGAGAATATGATCATCTTTCGCAAGAACTCTGGACTCAT 701
||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 657 CTGCGGATTTGTCCCCACGAATGAGAACATGATCATCTTTCGCAAGAACTCTGGTCTCAT 716
Query 702 CTGGCTCTTAATCCCTCAAGTACTGATGGGAAACACTTTGTTCCCTTGCTTCTTGGCTTT 761
||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 717 CTGGCTCCTAATCCCTCAAGTACTGATGGGAAACACTTTGTTCCCTTGCTTCTTGGTTTT 776
Query 762 GCTCATATGGGGACTTTATAAGATCACAAAGCGTGACGAGTTTGGTTACATTCTAAAGAA 821
||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||
Sbjct 777 GCTCATATGGGGACTTTATAAGATCACAAAGCGTGACGAGTATGGTTACATTCTCAAGAA 836
Query 822 CCaaaaaaaGATGGGATACTCTCATCTACTCTCCGTACGTCTATGTGTTCTTCTTGGAGT 881
||| || |||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 837 CCACAATAAGATGGGATACTCTCATCTACTCTCGGTTCGTCTATGTGTTCTTCTTGGAGT 896
Query 882 AACGGTGCTAGGGTTTCTAATAATACAGCTTCTTTTCTTCTGTGCCTTTGAGTGGACCTC 941
||||||||||||||||| ||||||||||||||||||||||| |||||||| ||||||||
Sbjct 897 GACGGTGCTAGGGTTTCTGATAATACAGCTTCTTTTCTTCTGCGCCTTTGAATGGACCTC 956
Query 942 TGAGTCTCTAGAAGGAATGAGTTCGTACGAGAAGTTGGTTGGGTCGTTGTTTCAAGTGGT 1001
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 957 TGAGTCTCTAGAAGGAATGAGTTCGTACGAGAAGTTGGTTGGATCGTTGTTTCAAGTGGT 1016
Query 1002 GAATTCGCGACATACCGGAGAAACTATTGTTGACCTCTCTACACTTTCCCCAGCCATCTT 1061
|||||||||||| |||||||||||||| || ||||||||||||||||||||||| |||||
Sbjct 1017 GAATTCGCGACACACCGGAGAAACTATAGTAGACCTCTCTACACTTTCCCCAGCTATCTT 1076
Query 1062 GGTACTCTTTATTCTTATGATGTATCTTCCTTCATACACATTATTTATGCCGTTGACGGA 1121
||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||
Sbjct 1077 GGTACTCTTTATTCTTATGATGTATCTTCCTCCATACACTTTATTTATGCCGTTGACGGA 1136
Query 1122 ACAAAAGACGATAGAGAAAGAAGGAG-A--TGATGATTCCGGAAATGGAAAGAAAGTGAC 1178
|||||||||||||||||||||||||| | ||||||||||| ||||||||||||||| |
Sbjct 1137 ACAAAAGACGATAGAGAAAGAAGGAGGAGATGATGATTCCGAAAATGGAAAGAAAGTTAA 1196
Query 1179 AAAGAGTGGACTCTTCGTGTCACAACTTTCCTTTTTGACGATATGCATCTTTCTCATTTC 1238
||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1197 AAAGAGTGGACTCATCGTGTCACAACTTTCCTTTTTGACGATATGTATCTTTCTCATTTC 1256
Query 1239 GATCACCGAAAGGCAAAAACTACGACGCGATCC-ACTCAATTTCAATGTCCTTAACATCA 1297
||||||||||||||||| |||| ||| ||||| | | |||||||| |||||||||||||
Sbjct 1257 AATCACCGAAAGGCAAAATCTACAACGTGATCCGA-TAAATTTCAACGTCCTTAACATCA 1315
Query 1298 CTCTCGAAGTTATCAGTGCATATGGAAACGTGGGTTTCACTACCGGGTACAGCTGTGAAC 1357
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1316 CTCTCGAAGTTATCAGTGCATATGGAAACGTTGGTTTCACTACCGGGTACAGCTGTGAAC 1375
Query 1358 GGCGTCTGGACATCAGCGACGGTAGCTGCAAAGACGCGGGTTATGGATTTGCAGGACGAT 1417
||||| ||||||||||||| ||| |||||||||||||| ||||||| |||||||||||||
Sbjct 1376 GGCGTGTGGACATCAGCGATGGTGGCTGCAAAGACGCGAGTTATGGGTTTGCAGGACGAT 1435
Query 1418 GGAGTCCTGTCGGAAAATTCGTACTAATAATAGTAATGTTTTATGGGAGGTTTAAGCAGT 1477
||||||| | ||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1436 GGAGTCCAATGGGAAAATTCGTACTAATAATAGTAATGTTTTATGGTAGGTTTAAGCAGT 1495
Query 1478 TCACAGCCAAATCTGGCCGAGCATGGATACTTTATCCCTCCTCTTCCTAACATAT--C-A 1534
||||||||||||||||||| |||||||| ||||| ||||| |||||||||||||| | |
Sbjct 1496 TCACAGCCAAATCTGGCCGCGCATGGATTCTTTACCCCTCGTCTTCCTAACATATTTCGA 1555
Query 1535 T-ATATA-AA-TGTTATATAAAAATTAGTCTCGTGTGTCACTTTAGTATTCCTTTTCTGT 1591
| ||||| || |||||||| |||||||||| | | | | | || |||||||||||||
Sbjct 1556 TCATATATAAATGTTATATTAAAATTAGTCAC-T-T-T---T--AGCATTCCTTTTCTGT 1607
Query 1592 G--TGATGTACAATAAGTTTGTATGTAGGTTT-CATCATCGTTAATAATATTAACGATTC 1648
| ||||||||||||||||||||||||| ||| ||||||||||||| | | |
Sbjct 1608 GAGTGATGTACAATAAGTTTGTATGTAG-TTTGCATCATCGTTAATC-------C--T-C 1656
Query 1649 GTTAATATTATTA-AATGTATGAAAATATAATTTAAGGA 1686
||||||||||| | |||||||||| ||||||| ||||||
Sbjct 1657 GTTAATATTATGATAATGTATGAAGATATAATATAAGGA 1695
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 83332904700
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5