BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489875
Length=3785
Score E
Sequences producing significant alignments: (Bits) Value
AT4G10320.1 | Symbols: | tRNA synthetase class I (I, L, M and ... 5714 0.0
AT3G23145.1 | Symbols: | zinc ion binding;isoleucine-tRNA liga... 226 1e-57
> AT4G10320.1 | Symbols: | tRNA synthetase class I (I, L, M and
V) family protein | chr4:6397330-6404596 REVERSE LENGTH=3856
Length=3856
Score = 5714 bits (3094), Expect = 0.0
Identities = 3465/3646 (95%), Gaps = 17/3646 (0%)
Strand=Plus/Plus
Query 1 AAAAA-TCTGCAGAAACCCTAATTTTTCG--AGGGGATTGAGATTCTTCAGTTTCCGCCA 57
||||| |||||||||||||||| |||||| | | |||| |||||||| |||||| |||
Sbjct 33 AAAAACTCTGCAGAAACCCTAA-TTTTCGTCA-GTGATT--GATTCTTCCGTTTCCACCA 88
Query 58 TGGAAGAAGTATGCGAAGGAAAAGAATTCTCATTCCCTCGTCAAGAAGAAGATGTCCTCT 117
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 89 TGGAAGAAGTATGCGAAGGAAAAGAATTCTCATTCCCTCGTCAAGAAGAAGATGTCCTCT 148
Query 118 CCTTCTGGAATGAAATCGATGCTTTCAAAACTCAGCTCAAACGCACTGAGAATCTCCCTG 177
||||||||| |||||||||||||||||| || ||||||||||||||||||||||| ||||
Sbjct 149 CCTTCTGGACTGAAATCGATGCTTTCAAGACACAGCTCAAACGCACTGAGAATCTTCCTG 208
Query 178 AATACATCTTCTACGACGGACCTCCTTTCGCCACCGGACTTCCTCACTACGGACATATCC 237
| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 209 AGTACATCTTCTACGACGGACCTCCTTTTGCCACCGGACTTCCTCACTACGGACATATCC 268
Query 238 TCGCCGGTACGATTAAAGATATCGTGACTCGGTATCAGTCCATGAATGGTCACCATGTCA 297
|||| ||||||||||||||||| ||||||||||||||| |||||| ||||||||||||||
Sbjct 269 TCGCTGGTACGATTAAAGATATTGTGACTCGGTATCAGACCATGACTGGTCACCATGTCA 328
Query 298 CTCGCCGGTTTGGGTGGGATTGTCATGGCTTACCTGTTGAGAATGAGATTGATCGGAAAT 357
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 329 CTCGTCGGTTTGGGTGGGATTGTCATGGCTTACCTGTTGAGAATGAGATTGATCGGAAAT 388
Query 358 TGAATATCAAGAGGAGAGAGGAAGTTATTAAGATGGGGATTGATAAGTATAATGAAGAGT 417
||||||| ||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 389 TGAATATTAAGAGGAGAGATGAAGTTATTAAGATGGGAATTGATAAGTATAATGAAGAGT 448
Query 418 GTAGAAGTATTGTGACTCGTTATGTTGGTGAGTGGGAGAAGGTTATTACTAGGACTGGTC 477
|||| |||||||||||||||||||||| ||||||||||||||||||||||||| |||||
Sbjct 449 GTAGGAGTATTGTGACTCGTTATGTTGCTGAGTGGGAGAAGGTTATTACTAGGTGTGGTC 508
Query 478 GTTGGATTGATTTCAAAAATGATTATAAGACTATGGATTTGCCTTTTATGGAAAGTGTTT 537
||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 509 GTTGGATTGATTTTAAGAATGATTATAAGACTATGGATTTGCCTTTTATGGAAAGTGTTT 568
Query 538 GGTGGGTTTTTGCTCAGCTTTGGGATAAGAATCTTGTTTACAGAGGATTCAAGGTTATGC 597
||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 569 GGTGGGTTTTTTCTCAGCTTTGGGAGAAGAATCTTGTTTACAGAGGATTCAAGGTTATGC 628
Query 598 CATATAGTACTGGTTGTAAGACACCTTTATCTAATTTTGAAGCTGGTCAGAACTATAAGG 657
| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 629 CGTACAGTACTGGTTGTAAGACACCTTTATCTAATTTTGAAGCTGGTCAGAACTATAAGG 688
Query 658 AAGTCCCTGATCCTGAAATCATGGTGACTTTTCCGGTTATTGGGGATCAAGATAATGGTG 717
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 689 AAGTCCCTGATCCTGAAATCATGGTGACTTTTCCGGTTATTGGGGATCAAGATAATGCTG 748
Query 718 CTTTTGTGGCATGGACGACTACTCCATGGACTCTTCCAAGCAATCTTGCTTTGTGTGTAA 777
|||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 749 CTTTTGTGGCATGGACTACTACTCCGTGGACTCTTCCAAGCAATCTTGCTTTGTGTGTAA 808
Query 778 ATGCCAAGTTTGTCTATGTGAAGGTTCGTAACAAGAACACTGGAAAAGTGTACGTTGTTG 837
|||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 809 ATGCGAAGTTTGTCTATGTGAAGGTTCGTAACAAGAACACTGGAAAAGTGTACATTGTTG 868
Query 838 CTGAATCTCGGTTGTCAGCTCTTCCCACTGATAAGCCCAAGGCCAAGTTAAGTAATGGAC 897
|||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 869 CTGAATCTCGGTTGTCTGCTCTTCCCACTGATAAGCCTAAGGCCAAGTTAAGTAATGGAC 928
Query 898 CTGCTGATGTTACTAAGAAAGCAAATCCTAAAGCGAAAGGTGCTAAACCGGAAACTGCAG 957
|||||| || |||||||||||||||||||||||| |||||||||||||| || | |||||
Sbjct 929 CTGCTGGTGATACTAAGAAAGCAAATCCTAAAGCTAAAGGTGCTAAACCTGAGAGTGCAG 988
Query 958 CTGATTCTTATGAAGTTTTGGAAAAAATTAATGGAGCTTCGCTGGTTGGGAAGAAGTATG 1017
|||||||||||||||||||||| ||| ||||||||||||| |||||||||||||||||||
Sbjct 989 CTGATTCTTATGAAGTTTTGGAGAAATTTAATGGAGCTTCCCTGGTTGGGAAGAAGTATG 1048
Query 1018 AACCTTTGTTTGATTACTTTAGCGATTTCTCAAGTGAGGCCTTTCGAGTAGTAGCAGATG 1077
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1049 AACCTTTGTTTGATTACTTTAGTGATTTCTCAAGTGAGGCCTTTCGAGTAGTAGCAGATG 1108
Query 1078 ATTATGTCACTGATGACAGTGGTACTGGTATTGTCCACTGTGCTCCTGCCTTCGGTGAAG 1137
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1109 ATTATGTCACTGATGACAGTGGTACTGGTATTGTCCACTGTGCTCCTGCCTTTGGTGAAG 1168
Query 1138 ATGATTATCGTGTTTGTCTTTTGAACAAAATAATCAAAAAGGGGGAGAATCTAGTTGTTG 1197
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1169 ATGATTATCGTGTTTGTCTTTTGAACAAAATAATCAAAAAGGGGGAGAATCTAGTTGTTG 1228
Query 1198 CTGTTGATGATGATGGGTTGTTTACTGAGAGAATTACCCACTTCAGGGGCCGTTATGTCA 1257
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1229 CTGTTGATGATGATGGGTTGTTTACTGAGAGAATTACCCACTTCAGTGGCCGTTATGTCA 1288
Query 1258 AAGATGCAGACAAGGATATAATTGAAGCCGTTAAGGCCAAGGGCAGGCTTGTTAAAACGG 1317
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1289 AAGATGCAGACAAGGATATAATTGAAGCCGTTAAGGCCAAGGGCAGGCTTGTTAAAACGG 1348
Query 1318 GAAGCTTTACTCACTCATATCCATTTTGCTGGCGATCAGACACCCCTCTCATATATAGAG 1377
||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 1349 GAAGCTTTACTCACTCATACCCATTTTGCTGGCGATCAGACACCCCACTCATATATAGAG 1408
Query 1378 CAGTTCCAAGTTGGTTTGTGCGTGTGGAGCAGATGAAAGAAAAGTTGTTAAAAAGCAATG 1437
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1409 CAGTTCCAAGTTGGTTTGTGCGTGTGGAGCAGTTGAAAGAAAAGTTGTTAAAAAGCAATG 1468
Query 1438 ACCAGACAGAATGGGTACCTGATTATGTGAAGGATAAACGTTTTCACAATTGGCTCGAAA 1497
| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1469 AACAGACAGAATGGGTACCTGGTTATGTGAAGGATAAACGTTTTCACAATTGGCTCGAAA 1528
Query 1498 ATGCAAGGGATTGGGCAATCAGCCGAAGTAGATTTTGGGGCACGCCTCTTCCGATATGGA 1557
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1529 ATGCAAGGGATTGGGCAATCAGCCGAAGTAGATTTTGGGGCACGCCTCTTCCGATATGGA 1588
Query 1558 TCAGTGATGATGGGGAGGAAGTTGTGGTCATGGATTCCGTAGAGAAGCTTGAAAAGCTCT 1617
| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1589 TAAGTGATGATGGGGAGGAAGTTGTGATCATGGATTCCGTAGAGAAGCTTGAAAAGCTCT 1648
Query 1618 CTGGTGTCAAGGTCTTTGATCTGCATCGTCACCATATTGATCATATTACAATCCCATCTA 1677
||||||| ||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 1649 CTGGTGTTAAGGTCTTTGACCTGCATCGTCACCATATTGATCATATTACAATTCCATCTA 1708
Query 1678 GTCGTGGCCATGAGTTTGGTGTGCTCCGTCGTGTAGAAGACGTTTTTGATTGTTGGTTTG 1737
|||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1709 GTCGTGGCGATGAGTTTGGTGTGCTCCGTCGTGTAGAAGATGTTTTTGATTGTTGGTTTG 1768
Query 1738 AGAGTGGGTCAATGCCTTATGCATATATCCATTACCCATTTGAAAACAAGGAGCTATTTG 1797
||||||||||||||||||| || ||||||||||| || ||||||||||||||| ||||||
Sbjct 1769 AGAGTGGGTCAATGCCTTACGCGTATATCCATTATCCGTTTGAAAACAAGGAGTTATTTG 1828
Query 1798 AGAATAACTTTCCTGGTCATTTTGTGGCTGAAGGGCTTGATCAAACTCGTGGATGGTTTT 1857
|||| |||||||||||| |||||||||||||||| |||||||| ||||||||||||||||
Sbjct 1829 AGAAGAACTTTCCTGGTGATTTTGTGGCTGAAGGTCTTGATCAGACTCGTGGATGGTTTT 1888
Query 1858 ATACTCTTATGGTGTTGTCTACTGCATTATTTGAAAAACCAGCATTTAAACATCTGATTT 1917
||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||
Sbjct 1889 ATACTCTTATGGTGTTGTCTACTGCATTATTTGAAAAACCAGCGTTTAAAAATCTGATTT 1948
Query 1918 GCAATGGTCTTGTGCTTGCTGAGGATGGAAAAAAGATGAG-TAAAAAATTACGGAATTAT 1976
||||||||||||| |||||||||||||| ||||||||| | ||| |||||||||||||||
Sbjct 1949 GCAATGGTCTTGTACTTGCTGAGGATGGGAAAAAGATG-GCTAAGAAATTACGGAATTAT 2007
Query 1977 CCACCACCTTTGGAAGTCATAGATGAGTATGGGGCTGATGCTGTGCGATTGTACCTGATA 2036
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2008 CCACCACCTTTGGAAGTCATAGATGAGTATGGGGCTGATGCTGTGCGATTGTACCTGATA 2067
Query 2037 AATTCTCCGGTTGTACGTGCTGAGACACTACGCTTCAAAAAAGAAGGAGTACTTGGTGTT 2096
|||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||
Sbjct 2068 AATTCTCCGGTTGTACGTGCTGAGCCACTACGCTTCAAAAAAGAAGGAGTACTCGGTGTT 2127
Query 2097 GTCAAAGATGTATTCCTTCCATGGTACAATGCATATCGGTTCCTTGTTCAGAATGCAAAA 2156
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 2128 GTCAAAGATGTATTCCTTCCATGGTACAATGCATATCGGTTCCTCGTTCAGAATGCAAAG 2187
Query 2157 AGACTTGAGACTGAGGGCGGTGGGCCCTTTGTTCCTACTGATCTGGCAACTTTACAGTCA 2216
|||||||||||||| || |||| |||||||||||||||||||||||||||| ||||||||
Sbjct 2188 AGACTTGAGACTGAAGGTGGTGTGCCCTTTGTTCCTACTGATCTGGCAACTATACAGTCA 2247
Query 2217 GCAAACGTTCTTGATCAGTGGATTCACTCAGCTACGCAGAGTCTTGTTCGTACTGTTCGC 2276
|||||| |||||||||||||||||||||||||||||||||||||||||||| ||| |||
Sbjct 2248 GCAAACATTCTTGATCAGTGGATTCACTCAGCTACGCAGAGTCTTGTTCGTTTTGTCCGC 2307
Query 2277 CG-GGAGATGAAAAAATATCAGCTTTACACTGTGGTTCCTCATCTCTTGAAGTTCCTCGA 2335
| ||||||| | |||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 2308 -GAGGAGATGGATGCCTATCGGCTTTACACTGTGGTTCCTCGTCTCTTGAAGTTCCTCGA 2366
Query 2336 CAGTCTCACTAACGTATATGTTAGATTCAACCGCAAGAGGTTAAAAGGCCGTACGGGGGA 2395
|| |||||||||| ||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 2367 CAATCTCACTAACATATATGTCAGATTCAACCGCAAGAGATTAAAAGGCCGTACGGGGGA 2426
Query 2396 AGATGATTGTCACACTGCTCTTTCAACTCTATTCAATGTGCTCCTTACTACTTGCAAAGT 2455
|||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||
Sbjct 2427 AGATGATTGTCACACTGCTCTTTCGACTCTATTCAATGTGCTCCTTACTTCTTGCAAAGT 2486
Query 2456 GATGGCCCCTTTTACACCTTTCTTCACTGAAACTTTATACCAGAATCTGCGGAAAGCGTG 2515
||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 2487 GATGGCCCCGTTTACACCTTTCTTCACTGAAACTTTGTACCAGAATCTGCGGAAAGCGTG 2546
Query 2516 TAAAGGTTCTGAGGAAAGCGTTCACTATTGCAGTATTCCACCAAAGGAAGGAAAGGAAGG 2575
|||||||||||||||||| |||||||| |||||||||||||||| |||||||| ||||||
Sbjct 2547 TAAAGGTTCTGAGGAAAGTGTTCACTACTGCAGTATTCCACCAAGGGAAGGAATGGAAGG 2606
Query 2576 GAAGAGGATTGAGGATA-GTGTTACAAGGATGATGAAAATCATTGATCTTGCTCGGAACA 2634
| ||||||||||| || ||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2607 GGAGAGGATTGAGT-TAAGTGTTACGAGGATGATGAAAATCATTGATCTTGCTCGGAACA 2665
Query 2635 TTCGTGAGCGTAACAAACTACCCTTGAAAACTCCTCTAAAGGAAATGATTGTAGTTCATC 2694
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 2666 TTCGTGAGCGTAACAAACTACCCTTGAAAACTCCTCTAAAGGAAATGATTGTAGTCCATC 2725
Query 2695 CAGATGCAGAATTCTTAAATGACATAACTGGAGTACTAAGAGAGTATGTCTTGGAAGAAC 2754
| ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2726 CCGATGCTGATTTCTTAAATGACATAACTGGAGTACTAAGAGAGTATGTCTTGGAAGAAC 2785
Query 2755 TTAACGTAAGATCTCTTGTACCATGCAATGATACTCTGAAGTATGCATCTCTAAAAGCAG 2814
||||||| ||||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 2786 TTAACGTGAGATCGCTTGTACCATGCAATGATACTCTGAAGTATGCATCACTAAAAGCAG 2845
Query 2815 AACCAAATTTCAGTGTATTGGGAAAGCGACTTGGAAAGTCGATGGGGCTTGTTGCAAAGG 2874
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2846 AACCAGATTTCAGTGTATTGGGAAAGCGACTTGGAAAGTCGATGGGGCTTGTTGCAAAGG 2905
Query 2875 AAGTTAAAGAAATGTCTCAAAAAGATATCTTAACATTTGAGGAGGCTGGGGAAGTTACTA 2934
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 2906 AAGTTAAAGAAATGTCTCAAAAAGATATCTTAGCATTTGAGGAGGCTGGGGAAGTTACTA 2965
Query 2935 TTGCTAACCACTTGTTAAAGCGAGA-AGATATCAAGATTGTTAGGGTTTTCAAACGCCCA 2993
|||||||||||||| ||||| || | ||||||||||||||||||||||||||||||||||
Sbjct 2966 TTGCTAACCACTTGCTAAAG-GAAACAGATATCAAGATTGTTAGGGTTTTCAAACGCCCA 3024
Query 2994 GACGATATGAAAGATAATGAGATTGATTCAGCTGGAGATGGTGATGTTTTGGTGGTTCTG 3053
|||||| ||||||| ||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 3025 GACGATTTGAAAGAGAATGAGATTGATTCAGCTGGAGATGGTGATGTTTTGGTGATTCTG 3084
Query 3054 GATCTACGAGCAGATGATTCTTTGGTCGAAGCAGGTTTTGCCCGTGAGATTGTCAATAGG 3113
|||||||||||||||||||||||||| |||||||||||||||||||||||||| || |||
Sbjct 3085 GATCTACGAGCAGATGATTCTTTGGTTGAAGCAGGTTTTGCCCGTGAGATTGTAAACAGG 3144
Query 3114 ATCCAGAAATTGCGGAAAAAGTCAGGTCTGGAACCAACAGACACTGTGGACGTATACTTT 3173
||||||||| | ||||||||||||||||||||||||||||| |||||| || |||||
Sbjct 3145 ATCCAGAAACTAAGGAAAAAGTCAGGTCTGGAACCAACAGACTTTGTGGAAGTGTACTTC 3204
Query 3174 GAATCATTGGACGAGGATGAATCTGTTTCTAAACAAGTTCTAGTCTCTCAGGAACAAAAC 3233
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3205 CAATCATTGGACGAGGATGAATCTGTTTCTAAACAAGTTCTAGTCTCTCAGGAACAAAAC 3264
Query 3234 ATTAAGGATTCAATCGGCTCCCCTTTGCTTCTGTCTACTTTAATGCCATCGCATGCAGTC 3293
|| ||||||||||| |||||| |||| ||| |||||| |||||||||||| |||||||||
Sbjct 3265 ATCAAGGATTCAATTGGCTCCACTTTACTTTTGTCTAGTTTAATGCCATCACATGCAGTC 3324
Query 3294 ATAATAGCCGATGAGACATTTACACCAAAAGAAACATCCGATGAGAGTGTCAAAAAGGCT 3353
|||||||||||||||||||| || |||||||||||||||||||||||||||||||||| |
Sbjct 3325 ATAATAGCCGATGAGACATTCACCCCAAAAGAAACATCCGATGAGAGTGTCAAAAAGGTT 3384
Query 3354 CCAAAGTTGTCTTATAAGATAAGTTTGGCTAGACCGGCTTTGAAGTTCAATGAAGAGGCT 3413
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3385 CCAAAGTTGTCGTATAAGATAAGTTTGGCTAGACCGGCTTTGAAGTTCAATGAAGAGGCT 3444
Query 3414 ATTCTTGCTTTATACTCGGGAGATGTGAAATCTGCAACCGGGCTTCAAACATACTTGTTG 3473
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 3445 GTTCTTGCTTTATACTCAGGAGATGTGAAATCTGCAACCGGGCTTCAAACATACTTGTTA 3504
Query 3474 TCAAGGGATCATTCGAATTTGAAATCAGAGTTCCAAGCCGGAGATGGGAAGATAACTGTA 3533
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 3505 TCAAGGGATCATTCGAATTTGAAGTCAGAGTTCCAAGCCGGAGATGGGAAGATAACTGTA 3564
Query 3534 AGCTGCGTCGAAAATCTGCCT-TCTGTGACTGTTGTTCTAGGAGAACATCTGCATCTGTC 3592
|||||| | |||||| ||||| | || |||||| ||||| || |||||||| ||| ||
Sbjct 3565 AGCTGCATTGAAAATGTGCCTGT-TGCGACTGTGGTTCTTGGCGAACATCTCCATTTGAG 3623
Query 3593 AGTCGGTGACGACTTTTTGAGCAAGAGGAACGTATGAGCCCTCCCT 3638
||||| || ||||| |||||||||||||||| ||||||| |||||
Sbjct 3624 TGTCGGCGATGACTTATTGAGCAAGAGGAACGCATGAGCCGTCCCT 3669
Score = 195 bits (105), Expect = 4e-48
Identities = 134/148 (91%), Gaps = 1/148 (1%)
Strand=Plus/Plus
Query 3638 TTCCCTTATTTTTCTTCTTCCATACCTTACCTTTTAAAGTGCTTCTTTAAATTGTTGCAG 3697
|||||||||||||||||||||||| ||||||| | ||| | ||| |||| |||||||||
Sbjct 3709 TTCCCTTATTTTTCTTCTTCCATATCTTACCTAT-AAACTACTTATTTAGATTGTTGCAA 3767
Query 3698 AAAGTTAAATCCCGGTGTTGAGACACTCTTTTACTCGTTCTATTTGTACAATATTAAACT 3757
||||||||||| | |||||||||| |||||||||||||||||||||||||||| ||||||
Sbjct 3768 AAAGTTAAATCTCAGTGTTGAGACTCTCTTTTACTCGTTCTATTTGTACAATACTAAACT 3827
Query 3758 TTTATTCAACTCAAAATTTATGGTGGGA 3785
|||||||| ||||||||||||||| |||
Sbjct 3828 TTTATTCATCTCAAAATTTATGGTTGGA 3855
> AT3G23145.1 | Symbols: | zinc ion binding;isoleucine-tRNA ligases;ATP
binding;aminoacyl-tRNA ligases;nucleotide binding
| chr3:8252138-8253196 FORWARD LENGTH=477
Length=477
Score = 226 bits (122), Expect = 1e-57
Identities = 162/181 (90%), Gaps = 3/181 (2%)
Strand=Plus/Plus
Query 1000 TGGTTGGGAAGAAGTATGAACCTTTGTTTGATTAC-TTTAGCGATTTCTCAAGTGAGGCC 1058
||||||||||||||||||||||||||||||||||| ||||||||||||||||||| | |
Sbjct 169 TGGTTGGGAAGAAGTATGAACCTTTGTTTGATTACTTTTAGCGATTTCTCAAGTGTGACT 228
Query 1059 TTTCGAGTAGTAGCAGATGATTATGTCACTGA-TGACAGTGGTACTGGTATTGTCCACTG 1117
|||||| ||||||||||||||||||||| ||| ||| |||||||||||||||||||| ||
Sbjct 229 TTTCGACTAGTAGCAGATGATTATGTCA-TGAATGATAGTGGTACTGGTATTGTCCATTG 287
Query 1118 TGCTCCTGCCTTCGGTGAAGATGATTATCGTGTTTGTCTTTTGAACAAAATAATCAAAAA 1177
|||||||| ||| |||| |||||| ||||||||||||||| |||| | ||||| || ||
Sbjct 288 TGCTCCTGTCTTTGGTGCAGATGACTATCGTGTTTGTCTTGAGAACGAGATAATTAAGAA 347
Query 1178 G 1178
|
Sbjct 348 G 348
Score = 95.3 bits (51), Expect = 4e-18
Identities = 59/63 (94%), Gaps = 0/63 (0%)
Strand=Plus/Plus
Query 594 ATGCCATATAGTACTGGTTGTAAGACACCTTTATCTAATTTTGAAGCTGGTCAGAACTAT 653
||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 1 ATGCCTTATAGTACTGGTTGTAAAACACCACTATCTAATTTTGAAGCTGGTCAGAACTAT 60
Query 654 AAG 656
|||
Sbjct 61 AAG 63
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 188527371794
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5