BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489876
Length=899
Score E
Sequences producing significant alignments: (Bits) Value
AT4G10330.1 | Symbols: | glycine-rich protein | chr4:6406541-6... 863 0.0
> AT4G10330.1 | Symbols: | glycine-rich protein | chr4:6406541-6407777
FORWARD LENGTH=1044
Length=1044
Score = 863 bits (467), Expect = 0.0
Identities = 533/565 (94%), Gaps = 3/565 (1%)
Strand=Plus/Plus
Query 1 AGGGACGATGAGCAACAGAAGAAGAACCGGAGACGATGACAAAGGATTGCTCTGGAAACT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4 AGGGACGATGAGCAACAGAAGAAGAACCGGAGACGATGACAAAGGATTGCTCTGGAAACT 63
Query 61 TCCCCAAGTAAGGATCA-ACGACATCGGAAAAGTTGGTCCGGCCTTTGGACTCGGTTTCG 119
||||||||| ||||||| | ||||| |||||||||||||| || |||||||||||| |||
Sbjct 64 TCCCCAAGTTAGGATCAGA-GACATTGGAAAAGTTGGTCCAGCTTTTGGACTCGGTGTCG 122
Query 120 GTTGCGGATTCGGTTTCGGCGCCGGTCTTATCGGAGGTGTAGGATTCGGGCCAGGAGTTC 179
|||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 123 GTTGCGGATTTGGTTTCGGCGCCGGTCTTATCGGAGGTGTAGGATTCGGACCAGGAGTTC 182
Query 180 CTGGATTGCAATTTGGTCTTGGATTTGGAGCTGGTTGTGGAATTGGTGTAGGATTTGGCT 239
||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 183 CTGGATTACAATTTGGTCTTGGATTTGGAGCTGGTTGTGGAATTGGTGTAGGTTTTGGCT 242
Query 240 ATGGTGTTGGAAGAGGAGCTGCTTATGACCACTCTCGTTCTTATTACAACGTTGGAAAAC 299
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 243 ATGGTGTTGGAAGAGGAGCTGCTTATGATCACTCTCGTTCTTATTACAACGTTGGAAAAC 302
Query 300 CATCTCTGAATGAAGTTGATTCACTAATTGATGAACTTGTTGTTAGCACCAAGAAGCTTG 359
||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 303 CATCTCTGAATGAAGTTGATTCACTGATTGATGAACTTGTTGTTAGCACGAAGAAGCTTG 362
Query 360 TGAAAGCTACGACGAATGAAATCGACAAGTGGATCAAATGATGAACTTTTAGCTTTTGTT 419
|||||||||| || |||||||||||||||||| | ||||||||||||||||| ||||||
Sbjct 363 TGAAAGCTACTACAAATGAAATCGACAAGTGGTTAAAATGATGAACTTTTAGGATTTGTT 422
Query 420 GCAGCTTCCAAGTAAATGGTAGTGTTTGGTTTGTTCTTAGATCAAGAATGTAGACCTGGG 479
||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 423 GCAGCTTCCAAGTAAATGGTAGTGTTTGGTTTGTTCTTAGATCAATAATGTAGATTTGGG 482
Query 480 GCTAGTGA-AATCTCTTTTCTTTTTGTACAATTTTACGTATGGTATACAGGCGGATTCGC 538
|||||||| |||||| ||||||||||||||||||||||||||||||| || ||||||||
Sbjct 483 GCTAGTGATAATCTCCTTTCTTTTTGTACAATTTTACGTATGGTATAAAGATGGATTCGC 542
Query 539 ATAATTTTCATGGCAGATTTATCAT 563
||||||| |||| ||||||||||
Sbjct 543 ATAATTTAGGTGGCTGATTTATCAT 567
Score = 278 bits (150), Expect = 8e-74
Identities = 177/190 (93%), Gaps = 2/190 (1%)
Strand=Plus/Plus
Query 711 TCTATGTACATGATCGTGCGGCTCAATCGCTTCAGTTTTGATCCACATGATTTACATGTT 770
||||||||||||||| |||||||||||||||||||||| |||||||||||| || |||||
Sbjct 819 TCTATGTACATGATCCTGCGGCTCAATCGCTTCAGTTTCGATCCACATGATGTATATGTT 878
Query 771 ATAGACTTGTGGGATAACTCCTTGCAGAAAGAGTATGTTCACTTCTAGGACAAGTCGGAT 830
||||| |||||||| ||||||||| ||||||||||||||||| |||||||| ||||||||
Sbjct 879 ATAGAATTGTGGGA-AACTCCTTGTAGAAAGAGTATGTTCACGTCTAGGACTAGTCGGAT 937
Query 831 GATTCGGTTCT-TTTTTGGTGTAATGAGTATGTTCATAACTGTTGATCCCATGTGAAAAT 889
|||||| |||| ||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct 938 GATTCGTTTCTCTTTTTGGTGTAATGAGTATGTTCATAACTGTTGATACAATGTGAAAAT 997
Query 890 CTAACCGTTG 899
||||||||||
Sbjct 998 CTAACCGTTG 1007
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43904644478
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5