BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489882
Length=1547
Score E
Sequences producing significant alignments: (Bits) Value
AT4G10390.1 | Symbols: | Protein kinase superfamily protein | ... 1805 0.0
AT1G33260.1 | Symbols: | Protein kinase superfamily protein | ... 571 6e-162
> AT4G10390.1 | Symbols: | Protein kinase superfamily protein
| chr4:6441673-6443435 REVERSE LENGTH=1579
Length=1579
Score = 1805 bits (977), Expect = 0.0
Identities = 1266/1400 (90%), Gaps = 42/1400 (3%)
Strand=Plus/Plus
Query 162 AATCAAAGAAAGACTCAAtctttctctgttctgctctgttctgctctgttctgctctg-t 220
||||||| |||||||||||| || || || || | || ||||||||||||||||| |
Sbjct 208 AATCAAATAAAGACTCAATC-TT-TC--TT-TG--C--TT-TGCTCTGTTCTGCTCTGTT 257
Query 221 tttgctctg-ttttgcaatggcttgtttctTAAATTGTGTTAGATACGATGTCTCCAAGA 279
||||||||| |||| ||||||||||||||| ||||||||||||| |||||||||||||
Sbjct 258 TTTGCTCTGTTTTTATAATGGCTTGTTTCTTGAATTGTGTTAGATTTGATGTCTCCAAGA 317
Query 280 CAATCACCGACAAACCCACAAGTAAAGGATCTGGTGTGACTTGTTACAGTAGCTGGGATG 339
| ||||||||||||||||||||| |||||||||||||||||||||| | ||||||||||
Sbjct 318 CGATCACCGACAAACCCACAAGTCAAGGATCTGGTGTGACTTGTTATAACAGCTGGGATG 377
Query 340 ATGTGGAAACTCTTACTTCCAATTTCTCTAGATTGATTGGTTCTGGTGGCTATAGTAGTA 399
|||| |||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 378 ATGTTGAAACTCTCACTTCCAATTTCTCTAGATTGATTGGTTCTGGTGGCTATAGCAGTA 437
Query 400 TCTACATGGCTCGCTTCTCTGGCTCTGATAAAGCGGCTCTCAAGGTTCATGTTAGTAGCC 459
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 438 TCTACATGGCTCGCTTCTCTGGCTCTGATAAAGCGGCTCTCAAGGTTCATGTTAGTAGTC 497
Query 460 ACCGTCTTTATCAGGTCTTTAGACTTGAACTTGATATTTTGCTCCGTCTTCAACATCCTA 519
||||||||||||| |||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 498 ACCGTCTTTATCAAGTCTTTAGACTTGAGCTTGATATTTTGCTTCGTCTTCAACATCCTA 557
Query 520 ACATTGTGAAGCTTCTCGGCTATTTCGATGATTCAGAGGAAAATGGTGCTCTTCTTCTTG 579
||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 558 ACATTGTCAAGCTTCTTGGCTATTTCGATGATTCAGAGGAAAATGGTGCTCTTCTTCTTG 617
Query 580 AATATCTTCCTCAAGGAAATCTACAAGAGAAGCTCCAAAGCAATAGCAAGCAAGTCTTGC 639
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 618 AGTATCTTCCTCAAGGAAATCTACAAGAGAAGCTCCAAAGCAATAGCAAGCAAGTCTTGC 677
Query 640 AATGGAGGAACCGTGTAGCGATTGCGTTACAGTTAGTTCAAGCTATTGAACACATTCACG 699
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 678 AATGGAGGAACCGTGTAGCGATTGCGTTACAGTTAGTTCAAGCTATTGAACATATTCATG 737
Query 700 AGAAATGTACCCCGCAGATCGTGCACGGGGACATAAAAGCTTCCAATGTACTCCTAGATA 759
||||||||| ||||||||| |||||||||||||| ||| ||||||| || || ||||| |
Sbjct 738 AGAAATGTAGCCCGCAGATAGTGCACGGGGACATCAAATCTTCCAACGTTCTTCTAGACA 797
Query 760 AAAACTTTAATTGTAAGCTATGCGATTTCGGGTCAGCTAAAGTTGGATTCTCTTCGATGG 819
|||||||| |||| ||||| ||||||||||||||||||||||| || |||||||||||||
Sbjct 798 AAAACTTTGATTGCAAGCTTTGCGATTTCGGGTCAGCTAAAGTCGGGTTCTCTTCGATGG 857
Query 820 TTCAGCCTCCCACGATGTCGCCTAGATCCAGACAAGTGA-GAATGGTGGGATCACCGGGT 878
|||||||||| ||||||||||||||||| |||||||||| || |||||||||| || |||
Sbjct 858 TTCAGCCTCCTACGATGTCGCCTAGATCTAGACAAGTGAAGA-TGGTGGGATCTCCAGGT 916
Query 879 TATACAGACCCTCACTACTTAAAAACCGGGATTGCTTCGAAGAAGATGGATATGTATGGG 938
|| ||||||||||| || |||| |||||||||||||||||||||||||||||||||||||
Sbjct 917 TACACAGACCCTCATTATTTAAGAACCGGGATTGCTTCGAAGAAGATGGATATGTATGGG 976
Query 939 TTTGGTGTCGTGGTTCTTGAGTTGGTTTCAGGAAAAGAAGCGTTTTCTGCTGAGAGAGGC 998
||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 977 TTTGGAGTTGTGGTTCTTGAGTTGGTTTCAGGAAAAGAAGCGTTTTCTGCTGAGAGAGGT 1036
Query 999 GAGATGTTGGTGCATACAGCTGTTCCACTTATGAATGAGATTTTGGATTCAAGTGTAGAC 1058
|||||| ||||||||| ||||| ||||||||||||||||||||||||||| |||||||||
Sbjct 1037 GAGATGCTGGTGCATATAGCTGCTCCACTTATGAATGAGATTTTGGATTCGAGTGTAGAC 1096
Query 1059 ATAGCAGAAAACAAAGTGAGACAGTTCTTGGACCCGAGGTTGTTAAGTAACAGTCTTGAT 1118
|| |||| |||| || ||||||||||||||||||||||||||||| | |||||||||
Sbjct 1097 ATTTCAGAGGACAAGGTCAGACAGTTCTTGGACCCGAGGTTGTTAAGGGATAGTCTTGAT 1156
Query 1119 ATTGATGAGGTAAAGACAATGCTGAATATTGCTGCGCTTTGTATCAGTAGCAAACTATCT 1178
|| |||||||| ||||||||| ||| | |||||||| | |||||||||||||| ||||||
Sbjct 1157 ATCGATGAGGTCAAGACAATGTTGAGTGTTGCTGCGGTCTGTATCAGTAGCAAGCTATCT 1216
Query 1179 CTAAGACCTTCCGCTGCTCAAGTAGCGGAAACTCTAATAAAGGAAATCCCATCTTTGAGT 1238
||||||||||| ||||||||||||||||| ||||| ||||||||||| ||||| ||||||
Sbjct 1217 CTAAGACCTTCGGCTGCTCAAGTAGCGGATACTCTTATAAAGGAAATACCATCATTGAGT 1276
Query 1239 TTCCTCGGTTGTGGTAAAGGAGTGTGAGTTATGGG-GCATCCACGGTTTTCGTTGTAGCG 1297
||||||||||| |||||||||||||||||||| || | || | |||||| ||||||| |
Sbjct 1277 TTCCTCGGTTGCGGTAAAGGAGTGTGAGTTATCGGTG--TCGATGGTTTTTGTTGTAGTG 1334
Query 1298 TGGTA-GGATTGCGTGAACGAGACTGTGAAGTTGGTGTGCATTTAGGAGTTCCTTGGAAA 1356
||||| || | |||||||||| ||||| ||||||||||||||||||||||| ||||||||
Sbjct 1335 TGGTAAGGCT-GCGTGAACGACACTGTAAAGTTGGTGTGCATTTAGGAGTTTCTTGGAAA 1393
Query 1357 ACCAGCAAGAAGGAAAAACCATGTAAATACTCT-GTTTTTGTTTTGTGAATAGCAGCAGG 1415
|||||||||||| || ||||||||||||||||| ||||| ||||||||||||| ||||||
Sbjct 1394 ACCAGCAAGAAG-AATAACCATGTAAATACTCTTGTTTT-GTTTTGTGAATAGAAGCAGG 1451
Query 1416 AA-TAACATTTTGTCTAATTA--A--CA--A-CATTTCCTAGGAAATGTGTTTTTGATCC 1467
|| |||||||||||||||||| | || | ||||||||||||||||| ||
Sbjct 1452 AAATAACATTTTGTCTAATTATCATTCATCAACATTTCCTAGGAAATGTA------AT-- 1503
Query 1468 GTTGTTTGATTGTTGTTTTGTCTAGAAATCTTTGAGAGAAAGAGAACTTCTCTTCATGTC 1527
|| | |||||||||||||||| |||||||| ||||||||||||| |||| ||||||||
Sbjct 1504 -TT-T--GATTGTTGTTTTGTCTTGAAATCTTAGAGAGAAAGAGAAGTTCTGTTCATGTC 1559
Query 1528 CATGTAATGTAAAGTCAAGC 1547
|||||||||||||| ||||
Sbjct 1560 AATGTAATGTAAAGTAAAGC 1579
Score = 235 bits (127), Expect = 9e-61
Identities = 156/169 (92%), Gaps = 5/169 (3%)
Strand=Plus/Plus
Query 1 GGCAGCTTTATTAATAAATAATCAGTCAAACTCTGCCTCCCAATCCAAAGTCT-AAACCT 59
||||||||||||| ||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 1 GGCAGCTTTATTATTAAATAATCGGTCAAACTCTGCCTCCCAATCCAAAGTCTAAAACC- 59
Query 60 TTTCCTTCTTCCTTCATTACAAATCTAACAATCACTCATTGTCTCCAAATCCATAACTTT 119
||||||||||| ||| ||||||||| |||||| |||| |||||||||||||||||||||
Sbjct 60 TTTCCTTCTTCTTTCTTTACAAATCCAACAAT--CTCAATGTCTCCAAATCCATAACTTT 117
Query 120 CTTCGATCCCCTTGTTCTTCCTCTGTCTGCAGTTACATTTTTAATCAAA 168
|||||||||||||||||||||||||||||| ||||||||||| | ||||
Sbjct 118 CTTCGATCCCCTTGTTCTTCCTCTGTCTGCTGTTACATTTTTTA-CAAA 165
> AT1G33260.1 | Symbols: | Protein kinase superfamily protein
| chr1:12064509-12066376 FORWARD LENGTH=1599
Length=1599
Score = 571 bits (309), Expect = 6e-162
Identities = 771/985 (78%), Gaps = 68/985 (7%)
Strand=Plus/Plus
Query 312 GGTGTGACTTGTTACAGTAGCTGGGATGATGTGGAAACTCTTACTTCCAATTTCTCTAGA 371
||||| || |||| | || |||||||||||| || |||| ||||||||||||||||||
Sbjct 372 GGTGTTACCTGTT--A-TACCTGGGATGATGTTGAGTCTCTCACTTCCAATTTCTCTAGA 428
Query 372 -TTGATTGGTTCTGGTGGCTATAGTAGTATCTACATGGCTCGCT-TCTCTGGCTCTGAT- 428
|| |||||| ||||||||||||||||||||||| | ||||| | | ||||| ||| ||
Sbjct 429 CTT-ATTGGTACTGGTGGCTATAGTAGTATCTACTTAGCTCG-TGTGTCTGGTTCT-ATC 485
Query 429 AAAGCGGCTCTCAAGGTTCATGTTAGTAGCCACCGTCTTTATCAGGTCTTTA-GACTTGA 487
|| || ||||||||||||||||| ||||| || ||||||||||| || |||| | | |||
Sbjct 486 AACGCAGCTCTCAAGGTTCATGTCAGTAGTCATCGTCTTTATCAAGTGTTTAGGTC-TGA 544
Query 488 ACTTGATATTTTGCTCCGTCTTCAACATCCTAACATTGTGAAGCTTCTCGGCTA-TTTCG 546
||||| |||||||| ||||||||||||||| ||||||| |||||||| || || ||| |
Sbjct 545 GCTTGAGATTTTGCTTCGTCTTCAACATCCTCACATTGTTAAGCTTCTTGGTTACTTT-G 603
Query 547 ATGATTCAGAGGAAAATGGTGCTCTTCTT-CTTGAATATCTTCCTCAAGGAAATCTACAA 605
| |||||||| |||| ||| || | | || || || || ||||||||||| || || |||
Sbjct 604 ACGATTCAGAAGAAAGTGGAGCAC-TATTACTAGAGTACCTTCCTCAAGGTAACCTTCAA 662
Query 606 GAGAAGCTCCAA-AGCAATAGCAAGCAAGTCTTGCAATGGAGGAACCGTGTAGCGATTGC 664
|||||||| || | || ||||| ||||| || | |||||| ||| | || |||||
Sbjct 663 GAGAAGCT-TAACCGGAACAGCAAACAAGTGTTACCATGGAGAAACAGAACCGCTATTGC 721
Query 665 GTTACA-GTTAGTTCAAGCTATTGAACACATTCACGAGAAATGTACCCCGCAGATCGTGC 723
||| || ||| | ||||| |||||||| ||||| |||||||||| || ||||| ||||
Sbjct 722 GTTTCAGGTT-GCGCAAGCAATTGAACATATTCATGAGAAATGTAGTCCTCAGATTGTGC 780
Query 724 ACGGGGACATAAAAGCTTCCAATGTACTCCTAGATAAAAACTTT-AATTGTAAGCTATGC 782
|||| ||||| ||| ||||||| |||| || || ||| | ||| || | ||||| ||
Sbjct 781 ACGGTGACATCAAATCTTCCAACATACTTCTTGACAAACA-TTTCAACTCCAAGCTTTGT 839
Query 783 GATTTCGGGTCAGCTAAAGTTGGATTCTCTTCGATGGTTCAG-C--CT----C--C--C- 830
|||||||| |||||||||||||| ||||| || ||||||||| | || | | |
Sbjct 840 GATTTCGGATCAGCTAAAGTTGGTTTCTCGTCTATGGTTCAGCCTTCTAAGACGACGTCA 899
Query 831 ACGATGTCGCCTA-GATCC-AGACAAGTGA-GAATGGTGGGATCACC-GGGTTATACAGA 886
|| ||||| || | ||||| || ||||||| | ||| | || || || ||| || |||||
Sbjct 900 ACTATGTCACC-ACGATCCAAG-CAAGTGATG-ATGATTGGTTCTCCAGGG-TACACAGA 955
Query 887 CCCTCACTACTTAAAAACCGGGATTGCTTCGAAGAAGATGGATATGTATGGGTTTGGTGT 946
||||| ||||| | ||| || ||||||||||||||||||||||||||||||||||| ||
Sbjct 956 TCCTCATTACTTGAGAACTGGTATTGCTTCGAAGAAGATGGATATGTATGGGTTTGGAGT 1015
Query 947 CGTGGTTCTTGAGTTGGTTTCAGGAAAAGAAGCGTTTTCTGCTGAGAGAGGCGAGATGTT 1006
|||||||||||||||||||| || ||||||||| || | |||||||||| ||||||||
Sbjct 1016 GGTGGTTCTTGAGTTGGTTTCGGGTAAAGAAGCGGTTAGTTCTGAGAGAGGTGAGATGTT 1075
Query 1007 GGTGCATACAGCTG-TTCCACTT-ATGA-ATGAGATT-TTGGATTC-AAGTGTAGACATA 1061
||||||| || | | ||| || || | |||||||| ||| |||| || || ||| ||
Sbjct 1076 GGTGCATTCAACAGCTTCG--TTGAT-ACATGAGATTCTTG-ATTCGAA-TGGAGATATT 1130
Query 1062 GCAGAAAACAAAGTGAGACAGTTCTTGGACCCGAGGTTGTTAAGTAAC---AGTCTTGAT 1118
| |||| | |||||||||||||||||||| || ||||||| || | ||| |||||
Sbjct 1131 GGAGAAGAGAAAGTGAGACAGTTCTTGGATCCAAGGTTGTCCAGGGATGGTAGTATTGAT 1190
Query 1119 ATTG-ATGAGGTAAAGACAATGCTGAA-TATTGCTGCGCTT-TGTAT-CAGTAGCAAACT 1174
||| | ||||| ||||||||||| | | | ||||| || ||| | | ||||| |
Sbjct 1191 -TTGGAAGAGGTTAAGACAATGCT-ACGTGTGGCTGCT-TTCTGTCTTC-GTAGCCCTCC 1246
Query 1175 ATCTCTAAGACCTTCCGCTGCTCAAGTAGCGGAAACTCT-AATAAAGGAA-ATCCCATCT 1232
||| || ||||| || ||| ||||||||| ||||||| || || | || || || |||
Sbjct 1247 ATCGCTGAGACCCTCTGCTTCTCAAGTAGTTCAAACTCTTAACAA-G-AAGATACCGTCT 1304
Query 1233 TTGAG-TTTCCTCGGTTGTGGTAAA 1256
| | |||||||||||||||||||
Sbjct 1305 CT-ATCTTTCCTCGGTTGTGGTAAA 1328
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76355028945
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5