BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489891
Length=852
Score E
Sequences producing significant alignments: (Bits) Value
AT4G10480.1 | Symbols: | Nascent polypeptide-associated comple... 1098 0.0
> AT4G10480.1 | Symbols: | Nascent polypeptide-associated complex
(NAC), alpha subunit family protein | chr4:6477876-6479165
REVERSE LENGTH=938
Length=938
Score = 1098 bits (594), Expect = 0.0
Identities = 687/729 (94%), Gaps = 17/729 (2%)
Strand=Plus/Plus
Query 1 AGGGTTAGTTTCGCTGCGCTGTTTTAAGGGTTTTCG--------TTTT--T--gaagaag 48
|||||||||||||||||||||||| ||||||||||| |||| | |||||||
Sbjct 1 AGGGTTAGTTTCGCTGCGCTGTTTCAAGGGTTTTCGTTTTTATCTTTTCCTCCGAAGAAG 60
Query 49 aagataagaggtt---gaagaagaagaTGCCAGGACCAGTTATCGAGGAAGTGAATGAGG 105
||||||||||||| |||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 61 AAGATAAGAGGTTGAAGAAGAAGAAGATGCCAGGTCCAGTTATTGAGGAAGTGAATGAGG 120
Query 106 AGGCTCTTATGGATGCCATTAAAGAGCAGATGAAGCTCCAGAAGGAGAacgatgttgttg 165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 AGGCTCTTATGGATGCCATTAAAGAGCAGATGAAGCTCCAGAAGGAGAACGATGTTGTTG 180
Query 166 ttgaggatgtgaaagatggtgatgacgacgacgatgatgttgatgacgacgacgatgaga 225
||||||||||||||||||| || || ||||| ||||||||||||||||||||||||||||
Sbjct 181 TTGAGGATGTGAAAGATGGAGACGAAGACGATGATGATGTTGATGACGACGACGATGAGA 240
Query 226 ttgctgatgGAGCTGCTGAGAATGAGAG-TTCTAAGCAAAGTAGGAGCGAGAAGAAAAGC 284
||||||||||||||| |||||||||| | ||| ||||||||||| |||||||||||||||
Sbjct 241 TTGCTGATGGAGCTGGTGAGAATGAG-GCTTCCAAGCAAAGTAGAAGCGAGAAGAAAAGC 299
Query 285 CGAAAGGCGATGCTGAAACTGGGAATGAAACCTGTCACTGATGTTAGCAGAGTGACTATC 344
|||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 300 CGAAAGGCGATGCTGAAACTCGGAATGAAACCTGTTACTGATGTTAGCAGAGTGACTATC 359
Query 345 AAGAGATCAAAGAATGTGTTGTTTGTCATCTCGAAGCCGGATGTTTTCAAGAGTCCCAAT 404
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 360 AAGAGATCAAAGAATGTGTTGTTTGTCATCTCGAAGCCGGATGTGTTCAAGAGTCCGAAC 419
Query 405 TCTGAGACCTATGTGATATTTGGTGAGGCTAAGATTGATGACATGAGCTCTCAGCTGCAA 464
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 420 TCTGAGACCTATGTGATATTCGGTGAGGCTAAGATTGATGACATGAGCTCTCAGCTACAA 479
Query 465 GCACAAGCTGCTCAGAAGTTCAAGATGCCTGATGTTGCGTCTATGATCCCCAACACCGAT 524
|||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 480 GCACAAGCTGCTCAGAGGTTCAAGATGCCTGACGTTGCGTCTATGATCCCCAACACTGAT 539
Query 525 GGTTCTGAAGCAGCCACGGTTGCACAAGAGGAGGAAGACGATGAAGATGTTGATGAGACT 584
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 GGTTCTGAAGCAGCCACGGTTGCACAAGAGGAGGAAGACGATGAAGATGTTGATGAGACT 599
Query 585 GGTGTTGAAGCCAAGGACATTGATCTTGTGATGACTCAAGCTGGTGTCTCGAGGACCAAG 644
||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||
Sbjct 600 GGTGTTGAAGCCAAGGACATTGATCTTGTGATGACTCAAGCCGGTGTCTCGAGGCCCAAG 659
Query 645 GCTGTTAAGGCTCTTAAAGCCAGTGACGGAGATATTGTTTCCGCCATTATGGAACTCACT 704
||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||
Sbjct 660 GCTGTTAAGGCTCTTAAAGAGAGTAACGGAGATATTGTTTCCGCCATTATGGAACTCACT 719
Query 705 ACATAGGTT 713
|||||||||
Sbjct 720 ACATAGGTT 728
Score = 113 bits (61), Expect = 2e-24
Identities = 71/76 (93%), Gaps = 0/76 (0%)
Strand=Plus/Plus
Query 776 CTTCCTCTGAGCCATAAACAATGTTGCTTCACATCTATAATTTGAGATTTTTATGTCTAA 835
||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 845 CTTTCTCTGAGCCATAAACAATGTTGCTTCACATCTATAATTTGAGACGTTTATGTCTAG 904
Query 836 TGTTGTTATCTCTTTA 851
|||||||| |||||||
Sbjct 905 TGTTGTTAACTCTTTA 920
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41543639569
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5