BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg489895

Length=377
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G10507.1 | Symbols:  | other RNA | chr4:6494707-6495211 FORW...   466    7e-131


> AT4G10507.1 | Symbols:  | other RNA | chr4:6494707-6495211 FORWARD 
LENGTH=505
Length=505

 Score =  466 bits (252),  Expect = 7e-131
 Identities = 302/326 (93%), Gaps = 4/326 (1%)
 Strand=Plus/Plus

Query  13   CTTTTCAAGTCAAGTTTGATTATAGAATAATGAGTTCGTTGTTCAGTATGTTTGATTCCT  72
            ||||||||||| |||||||||||||||| |||| ||| ||||||| ||||||||||||||
Sbjct  45   CTTTTCAAGTCGAGTTTGATTATAGAATCATGAATTCATTGTTCACTATGTTTGATTCCT  104

Query  73   TTTGTGCAGAGATTATGAGGAACAAATTTACATCTAAGTCATCC-TCTCATGGATCATCT  131
            ||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct  105  TTTGTGCAGAGATTATGAGGAACAAATTTACATCTAAGTCA-CCTTCTCATGGATCATCT  163

Query  132  ACTTCTTCCTCGGGTGTTCAAGCCGTGTCGATTAAGAAGACAACAAAGAAGGTTTTGGTG  191
             |||||||||| ||||||||||||||||||||| |||||||| ||||||||||  |||||
Sbjct  164  GCTTCTTCCTCTGGTGTTCAAGCCGTGTCGATTGAGAAGACACCAAAGAAGGTCCTGGTG  223

Query  192  GAGAAAGAACTGAGGTTTGCGCCGGAGTTTGACGGGCTTCATTGCTTCGAAACCATAGTT  251
            ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  224  GAGAAAGTACTGAGGTTTGCGCCGGAGTTTGACGGGCTTCATTGCTTCGAAACCATAGTT  283

Query  252  CCTTCTTGATTATTCCAATACGGTTTTTCCCTTTTTATTTATGTTT-GATAGATTTTGTC  310
            ||||||||||||||||| |||| |||| || ||||| ||| | ||| |||||||||||||
Sbjct  284  CCTTCTTGATTATTCCACTACGATTTT-CCTTTTTTTTTTTTTTTTTGATAGATTTTGTC  342

Query  311  ATGAAATACTTACGAATGTGTTGCTT  336
            |||||||| ||||||| |||||||||
Sbjct  343  ATGAAATAGTTACGAAAGTGTTGCTT  368



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17744515397


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5