BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489906
Length=902
Score E
Sequences producing significant alignments: (Bits) Value
AT4G10600.1 | Symbols: | RING/FYVE/PHD zinc finger superfamily... 1144 0.0
> AT4G10600.1 | Symbols: | RING/FYVE/PHD zinc finger superfamily
protein | chr4:6547786-6548864 REVERSE LENGTH=1079
Length=1079
Score = 1144 bits (619), Expect = 0.0
Identities = 816/906 (90%), Gaps = 34/906 (4%)
Strand=Plus/Plus
Query 18 CATAGATTTACGTCAAGATACGTTTCtttttttCTCTATCAAGAATCTCAAAGCTCCTTC 77
|||||||||||||||||||| | | |||||| ||||||||||||| ||||||| |||
Sbjct 31 CATAGATTTACGTCAAGATA-G---C-TTTTTT-TCTATCAAGAATCGCAAAGCTATTTC 84
Query 78 ACGTAACATTACAATCGTCGTTGAGAAGAGACGAATT-GGTTTGACAAAGCTTCGAAATT 136
||||||||||||||||||||| |||||| ||||||| |||||||||||||||||| |||
Sbjct 85 GCGTAACATTACAATCGTCGTTCAGAAGAAACGAATTGGGTTTGACAAAGCTTCGATATT 144
Query 137 TAGGGCGATTTCTTGCTAAATTTGTGGAAGAATCAGAGAAATTTAGGCGttttttttttt 196
|||| ||||||| | | |||||||| |||||||||||||||||| | |||||||||||
Sbjct 145 CAGGGAGATTTCTGGGTTAATTTGTGAAAGAATCAGAGAAATTTA-GAGTTTTTTTTTTG 203
Query 197 GGGGTTAATTTGATATGAAGCCACACGAGGATTGGGTTTATGAATCTTGGACTGTAGATT 256
||||| ||||||| |||||||||||||| ||||||||||||||||| ||||| |||||||
Sbjct 204 GGGGTAAATTTGAGATGAAGCCACACGAAGATTGGGTTTATGAATCATGGACAGTAGATT 263
Query 257 GTGTTTGTGGTGTGAATTTTGATGATGGTAAAGAGATGGTTGATTGTGATGAATGTGGTG 316
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 264 GTGTTTGTGGTGTGAATTTTGATGATGGTAAAGAGATGGTTGATTGTGATGAATGTGGTG 323
Query 317 TTTGGGTTCATACATGGTGTTCTCGTTATGTTAAAGGTGATGATTTGTTTGTTTGCCACA 376
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 324 TTTGGGTTCATACATGGTGTTCTCGTTATGTTAAAGGTGATGATTTGTTTGTTTGCCACA 383
Query 377 GGTGTAAGATCAAAAAGAACGACGATGAATTGTCGAAGCTATCGGTTACTAAATCATTGA 436
||||||||| ||||| || || ||||||||||| ||| |||||||||||||||| ||||
Sbjct 384 AGTGTAAGATAAAAAACAATGAAGATGAATTGTCCAAGTTATCGGTTACTAAATCGTTGA 443
Query 437 GAATGGAGAATTCATCTATTCAGAGT-G--AGACTGTTGTATTGAAGACTTGTTCAGAGA 493
|||||||||||| || || |||||| | ||| ||||||||||||| ||||||||||||
Sbjct 444 GAATGGAGAATTTATGTACGCAGAGTAGTGAGAGTGTTGTATTGAAGGCTTGTTCAGAGA 503
Query 494 TACCAATTGAAGAAAGGGTTCATGTACAAGGAGTTCCTGGTGGTGATTTGGCTTTGTTTG 553
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 504 TACCAATTGAAGAAAGGGTTCATGTACAAGGAGTTCCTGGTGGTGATTTGGGTTTGTTTG 563
Query 554 AATGTGTTTCGTCGGTTTTTAGTCGGCAGCTT-TGGAAGTGTTCTGGTTATGTGCCTAAG 612
|||||||||| |||||||||||||||||| || ||||||||| ||||||||||||||||
Sbjct 564 AATGTGTTTCTTCGGTTTTTAGTCGGCAG-TTATGGAAGTGTAGTGGTTATGTGCCTAAG 622
Query 613 AAGTTTAGGTTTCAGTATAGGGAGTTTCCTTGTTGGGATGAGAAGGAGAATGTGTGTGAT 672
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 623 AAGTTTAGGTTTCAGTGTAGGGAGTTTCCTTGTTGGGATGAGAAGGAGAATGTGTGTGAT 682
Query 673 GTTGGTGGTGATGAAGAT-AC--T--TGT-GCTGGTGTTTTGTTGTCTATGTCGAAAGAA 726
|||| ||| ||||||||| | | | | ||||||||||||||||||||||||||||||
Sbjct 683 GTTGTTGGGGATGAAGATGATAGTAATCTTGCTGGTGTTTTGTTGTCTATGTCGAAAGAA 742
Query 727 TACGGTGTGGATGGTAAAGGAAAC----C--GG----G-G-TTCTAGAGGAATTGAGAGT 774
|||||||||||||||| ||| || | || | | |||||||| ||||||||||
Sbjct 743 AACGGTGTGGATGGTAAGGGAGACAATGCTAGGAATTGTGGTTCTAGAGAAATTGAGAGT 802
Query 775 GATGTAGACAAAGAGAAGAGCTTGATTTGT-A-C-TTTGAGTATAAATAAGAGGAGAAAA 831
|||||||| ||||||||||||||| ||||| | | |||||||||| |||||||||||||
Sbjct 803 GATGTAGAGAAAGAGAAGAGCTTGCTTTGTGATCCTTTGAGTATATATAAGAGGAGAAAC 862
Query 832 GAATCGGCGGGTGGTTTTGAAGATCGGGTTAAGAAGAAGGTTAAAGTTGCTGACAAAGAG 891
|| |||| |||||||||||||||| |||| ||||||||||||||||||||||| ||||||
Sbjct 863 GAGTCGGTGGGTGGTTTTGAAGATGGGGTAAAGAAGAAGGTTAAAGTTGCTGATAAAGAG 922
Query 892 GAAGAA 897
||||||
Sbjct 923 GAAGAA 928
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44055346919
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5