BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489908
Length=1416
Score E
Sequences producing significant alignments: (Bits) Value
AT4G10610.1 | Symbols: RBP37, ATRBP37, CID12 | CTC-interacting ... 2220 0.0
AT1G32790.2 | Symbols: CID11 | CTC-interacting domain 11 | chr1... 647 0.0
> AT4G10610.1 | Symbols: RBP37, ATRBP37, CID12 | CTC-interacting
domain 12 | chr4:6557237-6559487 FORWARD LENGTH=1454
Length=1454
Score = 2220 bits (1202), Expect = 0.0
Identities = 1349/1419 (95%), Gaps = 14/1419 (1%)
Strand=Plus/Plus
Query 1 TTCATTGTATTCCTCAAATCTCTTTACTTGATCGTTGGTTCTCTCAAAAATCAGATTTTT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 11 TTCATTGTATTCCTCAAATCTCTTTACTTGATCGTTGGTTCTCTCAAAAATCAGATTTTT 70
Query 61 ATTTCTGGGTTTTGTTCGAAATTTTCTGATCATGGCGGTCATTGAGAGCGTCGGAGCTAA 120
||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||
Sbjct 71 ATTTCTGGGTTTTGTTCGA--TTTTGTGATCATGGCGGTCATTGAGAGCGTCGGAGCTAA 128
Query 121 TACTACGGTGGAAGCTGGTGGTTTGATCTCGCCGTCGCCGCCGTCTTCCGTCACCAGTCA 180
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 129 TACTACTGTGGAAGCTGGTGGTTTGATCTCGCCGTCGCCGCCGTCTTCCGTCACCAGTCA 188
Query 181 AGAATCAGGAGTCT-CTTCTAACAACGATCACGGTGGAAATGAAATCCACGGTGAGATCG 239
||||||||||| || ||||||||||||||||||||||||||| |||||| | ||||||||
Sbjct 189 AGAATCAGGAG-CTTCTTCTAACAACGATCACGGTGGAAATGGAATCCATGATGAGATCG 247
Query 240 GAGTCCACGTGGCGAGATCCGACGGTGATGAGAGTTTTAAGCGTGATATGAGAGAGCTTC 299
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 248 GAGTCCACGTGGCGAGATCCGACGGTGGTGAGAGTTTTAAGCGTGATATGAGAGAGCTTC 307
Query 300 ATGAGCTCTTGTCTAAGCTTAATCCCATGGCTAAAGAGTTTGTTCCTCCTTCACTCACTA 359
| ||||||||||||||||||||||| ||||||||||||||| ||||||||||||| ||||
Sbjct 308 ACGAGCTCTTGTCTAAGCTTAATCCTATGGCTAAAGAGTTTATTCCTCCTTCACTTACTA 367
Query 360 AGCCAGTTGTTAATGGTTTTAACGGTGGTTTCTTCGCCGTTAATAATGGCTTTGGTGCTG 419
||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||
Sbjct 368 AGCCAGTTGTTAATGGTTTTAACGGCGGTTTCTTCGCCGTTAATAATGGCTTTGTTGCTG 427
Query 420 CCGGAAATTTCCCCGTTAACGAAGACGGTGGTTTTCGCCGTAAGAAGTCGTTCGGACAAC 479
|||||||||||||||| |||||||||||| | ||||| || |||||||||||||||||||
Sbjct 428 CCGGAAATTTCCCCGTCAACGAAGACGGTAGCTTTCGTCGGAAGAAGTCGTTCGGACAAC 487
Query 480 AAGGGAAAAGGAGAATGAATCCTAGGACAAGTTTGGCTCAGCGTGAAGAGATCATTCGAA 539
|||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 488 AAGGGAAACGGAGAATGAATCCTAGGACAAGTTTGGCTCAGCGTGAAGAGATCATAAGAA 547
Query 540 GAACTGTCTATGTGTCTGATATTGACCAACAGGTCACTGAGGAGCAGCTTGCTGGTTTGT 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 548 GAACTGTCTATGTGTCTGATATTGACCAACAGGTCACTGAGGAGCAGCTTGCTGGTTTGT 607
Query 600 TTATCGGCTTTGGACAGGTTGTTGACTGTCGTATATGTGGTGATCCCAACTCAGTACTTA 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 608 TTATCGGCTTTGGACAGGTTGTTGACTGTCGTATATGTGGTGATCCCAACTCAGTACTTA 667
Query 660 GGTTTGCTTTCATTGAGTTCACTGATGAAGTGGGTGCAAGGGCTGCGCTGAGTTTGTCTG 719
||||||||||||| ||||||||||||||||||||||||||| |||| |||| ||||||||
Sbjct 668 GGTTTGCTTTCATCGAGTTCACTGATGAAGTGGGTGCAAGGACTGCTCTGAATTTGTCTG 727
Query 720 GGACGATGCTGGGATTCTATCCTGTGAAGGTTATGCCGTCTAAGACAGCTATTGCACCGG 779
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 728 GGACGATGCTTGGATTCTATCCTGTGAAGGTTATGCCGTCTAAGACAGCTATTGCACCGG 787
Query 780 TTAACCCGACATTCTTGCCAAGGACTGAAGATGAGCGTGAGATGTGTGCGAGAACTATCT 839
||||||| || |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 788 TTAACCCAACCTTCTTGCCAAGGACTGAAGATGAGCGTGAGATGTGTGCAAGAACTATCT 847
Query 840 ACTGCACTAACATCGACAAGAAGCTCACTCAAGCAGACATAAAACTCTTTTTTGAGTCTG 899
||||||||||||| |||||||||||||||||| | ||||| |||||||| ||||||||||
Sbjct 848 ACTGCACTAACATTGACAAGAAGCTCACTCAAACCGACATTAAACTCTTCTTTGAGTCTG 907
Query 900 TGTGTGGAGAGGTGTACCGTCTGAGGCTGCTCGGCGATTATCATCATCCAACTCGCATTG 959
||||||| |||||||||||||||||||| || |||||||||||||||||||||||||| |
Sbjct 908 TGTGTGGCGAGGTGTACCGTCTGAGGCTACTGGGCGATTATCATCATCCAACTCGCATCG 967
Query 960 GTTTTGTGGAGTTTGTCATGGCTGAAAGTGCGATAGCTGCTCTGAACTGCAGTGGCGTCC 1019
| || ||||||||||||||||||||||| |||||||| ||||| ||||||||||| ||||
Sbjct 968 GCTTCGTGGAGTTTGTCATGGCTGAAAGCGCGATAGCGGCTCTCAACTGCAGTGGTGTCC 1027
Query 1020 TTCTTGGCTCTTTACCGATAAGGGTGAGTCCGTCAAAGACACCTGTTCGTTCCCGTGCTG 1079
||||||| ||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 1028 TTCTTGGTTCTTTACCGATAAGGGTGAGTCCATCAAAGACACCGGTTCGTTCCCGTGCTA 1087
Query 1080 TCCCGCGACAACAAATGCATTAACCGTAGTAGCTACAAGTTTTATAAATATTTCTGCTCC 1139
|||||||||| |||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 1088 TCCCGCGACATCAAATGCATTAACCGTAG---CTACAAGTTTTATATATATTTCTGCTCC 1144
Query 1140 TCACAGACATGTAAAGAATGTTTGTCTGAAACTTCTGGTTCTTTTGTTTTCCCTTATGTA 1199
||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||
Sbjct 1145 TCACAGACATGTAAAGAATGTTTGTCTGAAACTTCTGGTTCTTCTGTTTTCCCGTATGTA 1204
Query 1200 ATGCTAGAAGCTTGATGATGCTTCTGTTGCCTTTTGCTTTTGGGTAAATCTCTTAGGGAG 1259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1205 ATGCTAGAAGCTTGATGATGCTTCTGTTGCCTTTTGCTTTTGGGTAAATCTCTTAGGGAG 1264
Query 1260 AGGTTTTTTCGATTTGGGTTCTTACGTTTAGAAGTT-ACACAGAGCAGAAGAGTATAAAA 1318
|| |||||||||||||||||| ||||||||| |||| |||||||||||||||||| |||
Sbjct 1265 AG-TTTTTTCGATTTGGGTTCCTACGTTTAGTAGTTTACACAGAGCAGAAGAGTA-AAAC 1322
Query 1319 GACTGAGAGAGGCTTTTGAAGATTGTCTCTGTTTTT-AGTTATTTATACTCTCTTACCCC 1377
||||||||||||||||||||||||||||||||||| ||||||||||||||| | |||||
Sbjct 1323 -ACTGAGAGAGGCTTTTGAAGATTGTCTCTGTTTTTTAGTTATTTATACTCT-T-ACCCC 1379
Query 1378 TGAAGTTATTAGAAACTTGCTTTTGTGCTTAAATGTTTC 1416
||||||||||||||||||||||| ||||||||| |||||
Sbjct 1380 TGAAGTTATTAGAAACTTGCTTTGGTGCTTAAAAGTTTC 1418
> AT1G32790.2 | Symbols: CID11 | CTC-interacting domain 11 | chr1:11874704-11877387
REVERSE LENGTH=1744
Length=1744
Score = 647 bits (350), Expect = 0.0
Identities = 708/874 (81%), Gaps = 51/874 (6%)
Strand=Plus/Plus
Query 234 AGATCGGAGTC-CACGTGGCGAGATCCGAC-G-G-TGA------TGAGAGTTTTAAGCGT 283
||||||| ||| |||||||||||||||||| | | ||| |||||| |||||||||
Sbjct 384 AGATCGG-GTCACACGTGGCGAGATCCGACGGCGTTGACGGTGGTGAGAGCTTTAAGCGT 442
Query 284 GATATGAGAGAGCTTCATGAGCTCTTGTCTAAGCTTAATCCCATGGCTAAAGAGTTTGTT 343
||||||||||||||||| ||||| || |||||||||||||| |||||| |||||||||||
Sbjct 443 GATATGAGAGAGCTTCAGGAGCTTTTCTCTAAGCTTAATCCTATGGCTGAAGAGTTTGTT 502
Query 344 CCTCCTTCACTCACTAAGCCAGTTGTTAATGGTTTTAACGGTGG--T-TT---CT-T-C- 394
|||||||| || | ||| | || | ||| ||| |||||||||| | || || | |
Sbjct 503 CCTCCTTCTCTGAATAAACAAGGAGGTAACGGTGTTAACGGTGGTTTCTTCACCTCTGCT 562
Query 395 -G--CC--GTT----AATAATGGCTTTGGTGCTGCCGGAAATTTC---CCCGTTAACGAA 442
| || || || |||||||||| || | |||||||| | || |||||||
Sbjct 563 GGTTCCTTCTTCCGCAACAATGGCTTTGCTGGTACCGGAAATGGCGGATACGGTAACGAA 622
Query 443 GACGGTGGTTTTCGCCGTAAGAAGTCG-TTCGGACAACAAGGGAAAAGGAGAATGAATCC 501
|||||||||| || || |||||| | || || ||||||||| | || |||||| |
Sbjct 623 AACGGTGGTTTCCGACGGAAGAAG-AGTTTTGG---TCAAGGGAAACGAAGGATGAATGC 678
Query 502 TAGGACAAGTTTGGCTCAGCGTGAAGA-GATCATTCGAAGAACTGTCTATGTGTCTGATA 560
| | ||||| |||||||||| ||||| | | || || ||||| ||||| || ||||||
Sbjct 679 TCGAACAAGCATGGCTCAGCGAGAAGATG-TTATCCGTAGAACCGTCTACGTCTCTGATC 737
Query 561 TTGACCAACAGGTCACTGAGGAGCAGCTTGCTGGTTTGTTTATCG-GCTTTGGACAGGTT 619
| || |||||||||||||| ||||||||||||||||||||| | | ||| ||||||||||
Sbjct 738 TCGATCAACAGGTCACTGAAGAGCAGCTTGCTGGTTTGTTTGT-GAGCTGTGGACAGGTT 796
Query 620 GTTGACTGTCGTATATGTGGTGATCCC-AACTCAGTACTTAGGTTTGCTTTCATTGAGTT 678
||||||||||| ||||| ||||| ||| ||||| || ||| ||||||| ||||| |||||
Sbjct 797 GTTGACTGTCGCATATGCGGTGA-CCCAAACTCGGTCCTTCGGTTTGCATTCATAGAGTT 855
Query 679 CACTGATGAAGTGGGTGCAAGGGCTGCGCTGAGTTTGTCTGGGACGATGCTGGGATTCTA 738
||||||||||| |||||| | | |||| || | ||| || ||||| ||| ||||||||||
Sbjct 856 CACTGATGAAGAGGGTGCGATGACTGCTCTAAATTTATCGGGGACTATGTTGGGATTCTA 915
Query 739 TCCTGTGAAGGTTATGCCGTCTAAGACAGCTATTGCACCGGTTAACCCGACATTCTTGCC 798
||||||||| ||| | || || || |||||||| |||||||||||||||||||| |||||
Sbjct 916 TCCTGTGAAAGTTTTACCATCCAAAACAGCTATAGCACCGGTTAACCCGACATTTTTGCC 975
Query 799 AAGGACTGAAGATGAGCGTGAGATGTGTGCGAGAACTATCTACTGCACTAACATCGACAA 858
||||||||||||||||||||||||||||| |||||||||||||| |||||||| |||||
Sbjct 976 TAGGACTGAAGATGAGCGTGAGATGTGTGCAAGAACTATCTACTGTACTAACATAGACAA 1035
Query 859 GAAGCTCACTCAAGCAGACATAAA-ACTCTTTTTTGAGTC-TGTGTGTGGAGAGGTGTAC 916
|||| | |||||| ||||| | || | ||||||||||||| | | || |||||||| ||
Sbjct 1036 GAAGGTGACTCAATCAGACGTGAAGA-TCTTTTTTGAGTCCT-TCTGCGGAGAGGTTTAT 1093
Query 917 CGTCTGAGGCTGCTCGGCGATTATCATCA-TCCAACTCGCATTGGTTTTGTGGAGTTTGT 975
|| ||||||||||| || |||||||| || || | |||| |||| |||||| ||||| ||
Sbjct 1094 CGCCTGAGGCTGCTTGGAGATTATCAACACTCGA-CTCGTATTGCTTTTGTAGAGTTCGT 1152
Query 976 CATGGCTGAAAGTGCGATAGCTGCTCTGAACTGCAGTGGCGTCCTTCTTGGCTCTTTACC 1035
||||| ||||| || ||||||||||| ||||||||||| || ||||||| ||||||||
Sbjct 1153 AATGGCGGAAAGCGCAATAGCTGCTCTCAACTGCAGTGGAGTTGTTCTTGGTTCTTTACC 1212
Query 1036 GATAAGGGTGAGTCCGTCAAAGACACCTGTTCGT 1069
|||||| | | ||| |||||||| |||||||||
Sbjct 1213 TATAAGG-TCA-TCCTTCAAAGACGCCTGTTCGT 1244
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69778757550
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5