BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489910
Length=978
Score E
Sequences producing significant alignments: (Bits) Value
AT4G10630.1 | Symbols: | Glutaredoxin family protein | chr4:65... 1094 0.0
> AT4G10630.1 | Symbols: | Glutaredoxin family protein | chr4:6566625-6567629
REVERSE LENGTH=1005
Length=1005
Score = 1094 bits (592), Expect = 0.0
Identities = 882/1015 (87%), Gaps = 47/1015 (5%)
Strand=Plus/Plus
Query 1 ATGGGTTGCGTCTCATCTAACCTCTTGAATCC-CGACGAAGACTTCCCTCAAATCGGCGG 59
|||||||||||||||||||||||| | || || ||||||||||||| |||||||||||||
Sbjct 1 ATGGGTTGCGTCTCATCTAACCTCCT-AAACCACGACGAAGACTTCTCTCAAATCGGCGG 59
Query 60 TGGCAGCTCCGCCTTCGGCCACCACATCGTCAAACTAACCTCCACCACTTACGGTCTTCT 119
||| |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 60 TGGAAGCTCCGCCTTCGGTCACCACATCGTCAAACTAACCTCCACCACTTATGGTCTTCT 119
Query 120 CACACTCGA--C-CCTCCTCCTCCTTCCTCCGCCGCAT-TCTCCTCC-GATAATATGCCT 174
||||||||| | ||||||||||||| |||| || || | || || || || || |
Sbjct 120 CACACTCGATCCTCCTCCTCCTCCTT-CTCCTCC-TATGACGCCGCCGGAGAA-AT-TC- 174
Query 175 ATGACGCCGCCGGATAAATCTAAGTCATTGTGGTCTGAGCCAAGATTAATCAAGTCTGAG 234
| | | || | |||||||||||| | |||||||||||||| | || ||||| ||
Sbjct 175 A-CA-GTCGATACA-AAATCTAAGTCAATATGGTCTGAGCCAAGGGTGATAAAGTCGGAA 231
Query 235 CCGGAGATTATTAACTCTTGGGAGCTAATGTCAGGCCTCGACGGAGAGAGTTTCCGATTC 294
|||||||||||||||||||||||| ||||||| || ||||||||||||||||||||||||
Sbjct 232 CCGGAGATTATTAACTCTTGGGAGTTAATGTCTGGTCTCGACGGAGAGAGTTTCCGATTC 291
Query 295 ACGCCACTACCGAAGACTCCGGTAAAGTATAAAGTCTTTGGCGGTGA-AAGCAAAGAGAA 353
|||||||| || ||||||||||| ||||||||||| ||||| || || || |||||||||
Sbjct 292 ACGCCACTTCCTAAGACTCCGGTGAAGTATAAAGTGTTTGGTGGAGAGAA-CAAAGAGAA 350
Query 354 TTCGGATCCTAATCGGAGAAACCCTAGAAAAATCTTGAACGACGAAGTTTTAAAACCGCT 413
||| ||||||| |||||||||||||||||||| |||||||||||| ||||| ||||||||
Sbjct 351 TTCAGATCCTAGTCGGAGAAACCCTAGAAAAAACTTGAACGACGAGGTTTTGAAACCGCT 410
Query 414 AGATC----C---GA--ATTCGGATCCTAATTTGAGAAACCCTAG-AAA--G--T----C 455
||||| | || |||||||| |||||| ||||| |||||| ||| | | |
Sbjct 411 AGATCTGAACAGAGAGGATTCGGATTCTAATTCGAGAAGCCCTAGAAAATCGTTTAAACC 470
Query 456 GTTAGATCTGAAATTGGATGAGAAATTTGAGAGGATTTGTCCTCCGGGAGGAGAGAATCG 515
||||||| |||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 471 GTTAGATTTGAAATTGGATGAGAAATTTGAGAGGATTTGTCCACCAGGAGGAGAGAATCG 530
Query 516 TGTGGTGATGTACACGACGTCCTTGCGCGGTGTTCGTTGGACGTTTGAGGCGTGTAATGC 575
||||||||||||||||||||| ||||| ||||||||| ||||||||||||||||| ||
Sbjct 531 TGTGGTGATGTACACGACGTCGTTGCGAGGTGTTCGTCAAACGTTTGAGGCGTGTAACGC 590
Query 576 TGTGAGAGCGGCGGTGGAGAGTTTTGGTGTTGTGGTTTGTGAGAGAGATGTGTCGATGGA 635
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 591 TGTGAGAGCGGCGGTGGAGAGTTTTGGTGTTGTGGTTTGCGAGAGAGATGTGTCGATGGA 650
Query 636 TAGAGGGTTTAGGGAAGAGCTTGTGAGTCTAATGGCGAAGGGAGTTAAGGAAGATGGAGT 695
|||| ||||||| ||||||||||||||||||||||||||| ||||| ||| || |||||
Sbjct 651 TAGAAGGTTTAGAGAAGAGCTTGTGAGTCTAATGGCGAAGAGAGTTGGGGATGAGGGAGT 710
Query 696 GGCTGCATTGCCGCCTCGGGTTTTTGTGAAGGGAATGTATATTGGTGGAGTAGAGGAAGT 755
||||||||||||||||||||||||||||||||||| ||| |||||||||| |||||||||
Sbjct 711 GGCTGCATTGCCGCCTCGGGTTTTTGTGAAGGGAAGGTACATTGGTGGAGGAGAGGAAGT 770
Query 756 GTTGAGACTAGTTGAGGAAGGTTCTTTCGGAGAACTGATCCGTGGGATACCGAGAAAGAA 815
||||||||||||||||||||||||||||||||| |||||| | ||||| |||||||||||
Sbjct 771 GTTGAGACTAGTTGAGGAAGGTTCTTTCGGAGAGCTGATCAGCGGGATTCCGAGAAAGAA 830
Query 816 AGCGG-A---TG-GTG--CT-----TGTGATGGATGCGGTGGTATGTTTTTCTTGCCGTG 863
||||| | || | | | |||||||| ||||| ||| ||||||||||||||||
Sbjct 831 AGCGGGAGGATGCGAGAGCGGCGCGTGTGATGGTTGCGGCGGTTTGTTTTTCTTGCCGTG 890
Query 864 TTTTCGGTGTGATGGAAGCTGTAAAATGGTGAAAGGATGGGGTAGTGCCGCCGTCGTTGT 923
|||||||||| ||||||||||||| ||||||||||||||||||||||| | || |||||
Sbjct 891 TTTTCGGTGTAATGGAAGCTGTAAGATGGTGAAAGGATGGGGTAGTGCTTCGGTGGTTGT 950
Query 924 GAGATGTTCGGAGTGTAACGAGAACGGTCTTGTTCCATGTCCGATTTGCAGCTGA 978
||||||| |||||||| ||||| ||||||||||||||||| |||||||| |||
Sbjct 951 GAGATGTAATGAGTGTAATGAGAATGGTCTTGTTCCATGTCCTATTTGCAGTTGA 1005
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47873142091
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5