BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489911
Length=1369
Score E
Sequences producing significant alignments: (Bits) Value
AT4G10640.1 | Symbols: IQD16 | IQ-domain 16 | chr4:6571899-6574... 1753 0.0
> AT4G10640.1 | Symbols: IQD16 | IQ-domain 16 | chr4:6571899-6574427
FORWARD LENGTH=1487
Length=1487
Score = 1753 bits (949), Expect = 0.0
Identities = 1213/1338 (91%), Gaps = 28/1338 (2%)
Strand=Plus/Plus
Query 40 TCTCTCTCTCTGGTTTGTCAATTATAGAAAACGTTAATTCAAGATGGCTAAGAAGAACGG 99
||| ||||||||| | ||| || |||||||||||||||||| |||||||| ||||||||
Sbjct 58 TCTTTCTCTCTGGCTCGTCGCTTTTAGAAAACGTTAATTCAATATGGCTAAAAAGAACGG 117
Query 100 AACGTCATGGTTCACCGCCGTGAAAAAGATTCTCTGGTCACCGTCAAAAGACTCCGACAA 159
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 118 AACGTCTTGGTTCACCGCCGTGAAAAAGATTCTCTGGTCACCGTCAAAAGACTCCGACAA 177
Query 160 GAAGACT---CACCACAAAGAAACTGATTATAAGCAGAGAAAAGAAAAGAAAGGATGGAT 216
||||||| |||||||||||||| || ||| | |||||||||||||||||||||||||
Sbjct 178 GAAGACTCACCACCACAAAGAAACCGA-TATTA--AGAGAAAAGAAAAGAAAGGATGGAT 234
Query 217 TTTTAGAAAGACCAAACTCGAAACCACAAACTCTTTAGTAAAAGATTCTGTCCGTACGGT 276
|||| ||||||||||||||||||||||||||||| | || || || |||| | | |
Sbjct 235 TTTTCGAAAGACCAAACTCGAAACCACAAACTCTGTCTTACAACATACTGT-C---C-G- 288
Query 277 TCCTACGGTGGAGATAGATGAGGAAGAGAAACCGACGGTGACTGTCTCCGCCGTGGATGA 336
|||||||||| ||| ||| |||| |||||| |||||| ||||||| |||| || ||
Sbjct 289 ---TACGGTGGAGGCAGAGGAGAAAGAAAAACCGCCGGTGATTGTCTCCTCCGTAGAGGA 345
Query 337 TGCTGTCTCCGAGATCGTTAAGCTAACGGCAACTCCGGGTTATATTAGACGTCATTGGGC 396
| |||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 346 AGGTGTCACCGAGATCGTTAAGCTAACGGCAACTCCGGGTTTTATTAGACGTCATTGGGC 405
Query 397 TGCCATTATTATTATTCAGACAGCTTTCCGAGGCTACCTCGCTAGGAGAGCATTACGAGC 456
|||| |||||||||||||||||||||||||| |||||| |||||||||||||||| ||
Sbjct 406 TGCC---ATTATTATTCAGACAGCTTTCCGAGGTTACCTCTCTAGGAGAGCATTACGGGC 462
Query 457 ATTGAGAGGAATAGTGAAGTTACAAGCATTAGTGAGAGGTAACAATGTACGAAACCAAGC 516
|||| ||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 463 GTTGAAAGGAATAGTGAAGCTACAAGCATTAGTGAGAGGTAACAATGTAAGAAACCAAGC 522
Query 517 CAAACTCACTCTAAGATGCATCAAGGCTTTGGTTCGAGTTCAAGATCAAGTGCTTAATCA 576
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 523 AAAACTCACTTTAAGATGCATCAAGGCTTTGGTTCGAGTTCAAGATCAAGTGCTTAATCA 582
Query 577 TCATCAACAACAACGTTCAAGACTCTTAGCATCATCACCATCCAGTAATTGTAACATGGA 636
||||||||||||||| |||||| ||||| |||| ||||||| || || | || || ||
Sbjct 583 TCATCAACAACAACGCTCAAGAGTCTTATTATCACCACCATCGAGAAACTACAATATAGA 642
Query 637 AGCAAGGCGTAACTCGATGTTCGCTGAATCTAACGGTTTTTGGGACACTAAAACATATCT 696
|||||| |||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 643 AGCAAGACGTAACTCAATGTTCGCTGAATCTAACGGTTTTTGGGACACCAAAACATATCT 702
Query 697 TCAAGACATCCGTAGCCGTAGATCTTTGTCGAGGGACATGAGTAGGTGCAATGCTGAATT 756
||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||
Sbjct 703 TCAAGACATCCGTAGCCGTAGATCTTTGTCGAGGGACATGAATAGGTGCAATAATGAATT 762
Query 757 TAACTCGGAAGAAACAGAATTGATTTTGCAAAAGAAATTAGAGATTGCTATTAAACGAGA 816
| |||| || |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 763 TTACTCAGAGGAAACAGAATTGATTTTGCAGAAGAAATTAGAGATTGCTATTAAACGAGA 822
Query 817 GAAAGCTCAAGCACTTGCTCTCTCAAATCAGATTCGGAGTCGGTCTTACCGGAATCAATC 876
|||||||||||||||||||||||| |||||||||||||| ||||||| ||||||||||||
Sbjct 823 GAAAGCTCAAGCACTTGCTCTCTCTAATCAGATTCGGAGCCGGTCTTCCCGGAATCAATC 882
Query 877 AGCCGGCGACGATAGGGAGCTTCTAGAGAGAACACAATGGCTTGATCGGTGGATGGCTAC 936
||||||||| ||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 883 AGCCGGCGATGATAGGGAGCTTCTAGAGAGAACACAATGGCTTGACCGATGGATGGCTAC 942
Query 937 AAAGCAATGGGACGACACAATCACCAATTCTACTACC---AGAGCTCCCATCAAGACTCT 993
|||||||||||||||||||||||||||||| || | | |||| ||| |||||||||||
Sbjct 943 AAAGCAATGGGACGACACAATCACCAATTCCACAAACGTTAGAGATCCTATCAAGACTCT 1002
Query 994 TGAGACTGTAACCACTCATCATCATCAAAGATCGTATCCAGCGACTCCACCGTCGTGCAG 1053
|||| ||||||| |||||||||||||| ||||| |||||||||||||||||||| |||||
Sbjct 1003 TGAGGCTGTAACAACTCATCATCATCAGAGATCATATCCAGCGACTCCACCGTCTTGCAG 1062
Query 1054 AACTTTAAGATCC-TT-TGCAGTGAGATCAGCTAGTCCAAGAATACCATGTTCGCCTTCC 1111
| ||| ||||||| || || |||||||||||||||||||||||||||||||||||||||
Sbjct 1063 AGCTTCAAGATCCGTTATG--GTGAGATCAGCTAGTCCAAGAATACCATGTTCGCCTTCC 1120
Query 1112 TCAATGCAGCCGAATTACATGTCGGCTACAGAGTCGGCGAAGGCTAAGGCAAGGACTCAG 1171
|| |||||||| |||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 1121 TCGATGCAGCCAAATTACATGTCGGCGACAGAGTCGGCTAAGGCTAAGGCAAGGACTCAG 1180
Query 1172 AGCACGCCACGGAGGAGACCGGTTGGGACAGCGAAGAAGCGGCTGTGTTATGCGGATGAA 1231
|||||||||||||||||||| | | ||||||||||||||||| ||||||||||| |||
Sbjct 1181 AGCACGCCACGGAGGAGACCAAT-G--ACAGCGAAGAAGCGGCTTTGTTATGCGGAGGAA 1237
Query 1232 GATAGTTTGAGGAGTCCAAGCTTTAAGAGCTGTCTCTGGGGTGATCATGAATCGGATTAC 1291
|| |||||||||||||||||||||||||| ||||||||||| ||||||||||| |||||
Sbjct 1238 GAGAGTTTGAGGAGTCCAAGCTTTAAGAGTTGTCTCTGGGGAGATCATGAATCCGATTAT 1297
Query 1292 TCTTGTTGTTACGGTGATGGTTTCGCCGGAAAAATCTCACCTTGTTCTACGACTGAGCTC 1351
|||||||||||||||||||| |||||||| |||||||||||||||||||| |||||||||
Sbjct 1298 TCTTGTTGTTACGGTGATGGGTTCGCCGGGAAAATCTCACCTTGTTCTACCACTGAGCTC 1357
Query 1352 CGGTGGTTAAAGTGAGAC 1369
||||||||||||||||||
Sbjct 1358 CGGTGGTTAAAGTGAGAC 1375
Score = 67.6 bits (36), Expect = 3e-10
Identities = 38/39 (97%), Gaps = 0/39 (0%)
Strand=Plus/Plus
Query 1 TATAGTTACTTACATGAGCATCAACTTCACTAATAGCTA 39
||||||||||||||||||||||||||||||| |||||||
Sbjct 3 TATAGTTACTTACATGAGCATCAACTTCACTTATAGCTA 41
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67419331935
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5