BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489923
Length=1598
Score E
Sequences producing significant alignments: (Bits) Value
AT4G10790.1 | Symbols: | UBX domain-containing protein | chr4:... 2172 0.0
> AT4G10790.1 | Symbols: | UBX domain-containing protein | chr4:6640599-6643062
REVERSE LENGTH=1623
Length=1623
Score = 2172 bits (1176), Expect = 0.0
Identities = 1495/1639 (91%), Gaps = 61/1639 (4%)
Strand=Plus/Plus
Query 1 GGAAAATCAAATTAGGGTTTTGC-GATAATGGTTGATACTGTCGACAAATTAGGTTACTT 59
|||||||| |||||||||||| | || ||||||||||||||| |||||||||||||||||
Sbjct 1 GGAAAATCGAATTAGGGTTTT-CTGAAAATGGTTGATACTGTTGACAAATTAGGTTACTT 59
Query 60 CCAAGCGATTACAGGTCTTGAAGATGCCGATTTGTGCACTGAGATCCTTCAAGCTCATGG 119
|||||||||||||||||| |||||||| |||||||| |||||||||||||||||||||||
Sbjct 60 CCAAGCGATTACAGGTCTCGAAGATGCTGATTTGTGTACTGAGATCCTTCAAGCTCATGG 119
Query 120 TTGGGACCTAGAACTCGCAATCTCTTCATTCACATCTTCTGATCATGACGCTTCGTCTTC 179
||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 120 TTGGGACCTAGAACTAGCAATCTCTTCATTCACATCTTCTGATCAAGACGCTTCGTCTTC 179
Query 180 CGCCGCCG-TCGATGGTGGTAACAATCACGATCACGATCACGATAACGCCGCCGTGACTC 238
||||| || | | |||||||||||||| ||||||||||||| |||||||| |||||||||
Sbjct 180 CGCCGTCGAT-GGTGGTGGTAACAATCGCGATCACGATCACAATAACGCCACCGTGACTC 238
Query 239 CTGATTATCAACCTCGTGGGATCGTTGACGATACAGAGCTTGTTATGCGTGATGATGGAG 298
||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 239 CTGATTATCCACCTCGCGGGATCGTTGACGATACAGAGCTTGTTATGCGTGATGATGGAG 298
Query 299 GAGGCAATCGAGGTCCTGGAGTGGCGTGGAGGATTATTACTTTACCGATTTCGATTGTTT 358
|||| ||||||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 299 GAGGAAATCGAGGTCCAGGAGTTGCGTGGAGGATTATTACTTTACCGATTTCGATTGTTT 358
Query 359 CTGGTAGCTTAGGGTTAGTTTCCGGAGCGATCGGGTTAGGGATTTGGGCTGCTGGTGGTG 418
|||||||||||||||||||||| ||||||||||||||||| |||||||| ||||||||||
Sbjct 359 CTGGTAGCTTAGGGTTAGTTTCTGGAGCGATCGGGTTAGGTATTTGGGCCGCTGGTGGTG 418
Query 419 TTTTATCGTATTCCT-TTGGTATGTTAGGGTTTAGATCAGGGAGAGGTGGTGGTTCGGCG 477
|||||||||||| || ||||||||||||||||||||||||||||| ||||| |
Sbjct 419 TTTTATCGTATT-CTCTTGGTATGTTAGGGTTTAGATCAGGGAGA---GGTGG-T----- 468
Query 478 GGTTCGTCGTCGTCGGCTCGGCTTGTTTCGGTTTCTTCGGCTGCTGGTGAAGCGATGGAG 537
|||||| | |||||||||||||||||||||||||| |||| ||||||||||||||||
Sbjct 469 GGTTCG--G-AATCGGCTCGGCTTGTTTCGGTTTCTTCTGCTGTTGGTGAAGCGATGGAG 525
Query 538 TTTGTTGCTTTGTTTGATAGAGATTATTGGAGTAATAATAATGCTTTTAAGATTGATTTT 597
|||||||||||||||||||||||||| ||| | | |||||||||||||||||||||||||
Sbjct 526 TTTGTTGCTTTGTTTGATAGAGATTA-TGG-G-AGTAATAATGCTTTTAAGATTGATTTT 582
Query 598 GTAGTGGAAGGATTTATGGATGCGCTTCAGCGATCTAGGAGCTCGTTTAAGCTCTTGTTT 657
|| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 583 GTTGTGGAAGGATTTATGGATGCGCTTCAGCGATCTAGGAGTTCGTTTAAGCTCTTGTTT 642
Query 658 GTTTACTTGCATTCTCCGGATCATCCTGATACGCCTATGTTTTGTGATGGGACGCTTTGT 717
|||||||||||||||||||||||||||||||| ||| ||||||||| ||| |||||||||
Sbjct 643 GTTTACTTGCATTCTCCGGATCATCCTGATACACCTGTGTTTTGTGGTGGAACGCTTTGT 702
Query 718 AATGAAGCGGTTGTAGCGTTTGTTAATGAGAATTTTGTTTCTTGGGGAGGTAGTATTCGA 777
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 703 AATGAAGCCGTTGTAGCGTTTGTTAATGAGAATTTTGTTTCTTGGGGAGGTAGTATTCGA 762
Query 778 TCTAGTGAAGGATTTAAGATGAGTAATAGCTTGAAAGCATCGAGGTTTCCGTTTTGCGCT 837
||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 763 TCTAGTGAAGGGTTTAAGATGAGTAATAGCTTGAAGGCATCGAGGTTCCCGTTTTGCGCT 822
Query 838 GTTGTTATGCCTGCTGCTAATCAGAGAATTGCTCTTCTTCAGCAGGTTGAGGGACCAAAA 897
|| ||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 823 GTGGTTATGCCTGCTGCTAACCAGAGAATTGCTCTTCTTCAGCAGGTCGAGGGACCAAAA 882
Query 898 TCTCCAGAAGAAATGCTTGCTATACTACAGAGAGTTGTAGAAGATAGTTCACCTACCCTG 957
||||| ||||| |||||||| ||||| |||||| ||||||||||||| |||||||| ||
Sbjct 883 TCTCCGGAAGAGATGCTTGCCATACTCCAGAGAATTGTAGAAGATAGCTCACCTACTTTG 942
Query 958 GTAACTGCTAGGGTTGAGGCAGAGGAAAGAAGAACCAATCTGCGTCTGAGAGAGGAACAA 1017
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 943 GTAACTGCTAGGGTTGAGGCGGAGGAAAGAAGAACCAATCTGCGTCTGAGAGAGGAACAA 1002
Query 1018 GATGCTGCTTACCGGGCTGCTCTTGAAGCCGATCAAGCAAGGGAGCGAGAGAGACGGGAA 1077
|||||||||||||| ||||||||||||||||||||||||||||||| | |||||| |||
Sbjct 1003 GATGCTGCTTACCGTGCTGCTCTTGAAGCCGATCAAGCAAGGGAGCAACAGAGACAGGAG 1062
Query 1078 GAGGAAGAACGTTTAGAGAGGGAAGCTGCTGAGG-A-A-A--AA-------GA-G--G-- 1120
||| |||| ||||||||||| ||||||||||||| | | | || || | |
Sbjct 1063 GAGAAAGAGCGTTTAGAGAGAGAAGCTGCTGAGGCAGAGAGGAAACTCAAAGAAGAAGAA 1122
Query 1121 ----CTCAGgagagagcagaacgtgaagctgcagagaaagaagctgctagagtgagaatg 1176
||| ||||||||||| |||||||||| ||||| | |||||||||||||| |||||
Sbjct 1123 GAGGCTCGGGAGAGAGCAGCGCGTGAAGCTGAAGAGAGACAAGCTGCTAGAGTGCGAATG 1182
Query 1177 agacaagagaaagCACTTGCTATTGGAGATGAACCTGAGAAAGGCCCTGATGTTACACAA 1236
|||||||||||||| |||||| ||||||| ||||||||||||||||||||||||||||||
Sbjct 1183 AGACAAGAGAAAGCTCTTGCTCTTGGAGAAGAACCTGAGAAAGGCCCTGATGTTACACAA 1242
Query 1237 GTTTTGGTACGGTTCCCGAATGGAGAAAGGAAAGGGAGGATGTTTAAGAGCGAAACCAAG 1296
|| || || |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1243 GTGTTAGTTCGGTTCCCGAATGGAGAAAGAAAAGGGAGGATGTTTAAGAGCGAAACCAAG 1302
Query 1297 ATCCAGACATTGTACGACTACGTTGATTCACTTGGAGTCTTAGATACAGAAGAGTACAGC 1356
|||||||||||||| |||||||| |||||||||||| |||||||||||||||||||||||
Sbjct 1303 ATCCAGACATTGTATGACTACGTGGATTCACTTGGACTCTTAGATACAGAAGAGTACAGC 1362
Query 1357 TTAATCACAAACTTCCCAAGGACAGTTTACGGAAGAGACAAAGAGTCAATGTCACTAAAA 1416
|||||||||||||||||||||||||| || || ||||||||||||||||||||||| |||
Sbjct 1363 TTAATCACAAACTTCCCAAGGACAGTGTATGGGAGAGACAAAGAGTCAATGTCACTGAAA 1422
Query 1417 GACGCAGGTTTGCATCCTCAGGCAAGTCTCTTCATCGAGATCAACTAAAAACTGCTGATT 1476
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1423 GACGCAGGTTTGCATCCTCAGGCAAGTCTCTTCATCGAGATCAACTAAAAT-TGCTGATT 1481
Query 1477 CTTCTGCTTCTTTCTCCttt------t--tt--t---CAGGTTTTTCTCTATT--AAGAT 1521
|||||| ||||||||||||| | || | ||| |||||||||||| || ||
Sbjct 1482 CTTCTGTTTCTTTCTCCTTTAGCCCCTCGTTAATTTTCAGTTTTTTCTCTATTTGAA-AT 1540
Query 1522 ATTTAGTTTGTTGCTTCAGTGATACATTGGACGTGATATTACATATATAATATAC--ACA 1579
|| ||||||||||||||| |||||||||||||| ||||||||||||||||||||| |||
Sbjct 1541 ATATAGTTTGTTGCTTCAATGATACATTGGACGAGATATTACATATATAATATACGTACA 1600
Query 1580 CATATATTCAGAAGTTGCG 1598
|||||||||||||||||||
Sbjct 1601 CATATATTCAGAAGTTGCG 1619
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78915256740
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5