BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489924
Length=1178
Score E
Sequences producing significant alignments: (Bits) Value
AT4G10800.1 | Symbols: | BEST Arabidopsis thaliana protein mat... 1652 0.0
> AT4G10800.1 | Symbols: | BEST Arabidopsis thaliana protein match
is: BTB/POZ domain-containing protein (TAIR:AT3G05675.1);
Has 1807 Blast hits to 1807 proteins in 277 species: Archae
- 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385;
Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
| chr4:6643309-6644845 FORWARD LENGTH=1264
Length=1264
Score = 1652 bits (894), Expect = 0.0
Identities = 1089/1184 (92%), Gaps = 10/1184 (1%)
Strand=Plus/Plus
Query 1 AAACATCGCAAAAATGCAGGAAGCTGTCATTGATGTATCACTCAATACAAAGAATGTCTT 60
|||||||| |||||||||||| | ||||||||||||||| ||||||||||||||||||||
Sbjct 85 AAACATCG-AAAAATGCAGGACGATGTCATTGATGTATCCCTCAATACAAAGAATGTCTT 143
Query 61 CTCGTCAGCTCTCCGA-TTCGCTATGTCCATTGATACATTGAAGAACTCTCCTGAGCTTG 119
|| ||||||||| | | ||||| ||||||||||||||| | |||||||||||||||||||
Sbjct 144 CTTGTCAGCTCTTC-ATTTCGCCATGTCCATTGATACACTAAAGAACTCTCCTGAGCTTG 202
Query 120 TTCATGAGCTCAAAACTTCAGCTCAAGAACAAGTGGAGTTCATGTTATCCGAGGACGAAG 179
|| ||||||| ||||| ||||||||||||||||||||||| |||||||| || |||||||
Sbjct 203 TTGATGAGCTGAAAACATCAGCTCAAGAACAAGTGGAGTTTATGTTATCTGAAGACGAAG 262
Query 180 AGGTACGGTTACTGATTACTGAAGAGGAAGTGAAATCGGTTGTTAGATTAGGTATCTCGA 239
||||||||||||||||| | ||||||||||||||||| ||||| |||||||||||||| |
Sbjct 263 AGGTACGGTTACTGATTTCCGAAGAGGAAGTGAAATCCGTTGTGAGATTAGGTATCTCAA 322
Query 240 ATGTTATATCGATGTTGTTGGATAGATTATCATCTTTGCTTGTGATTCTTCCTGAATGTA 299
|||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct 323 ATGTTATATCGATGTTATTGGATAGATTATCATCATTGCTTGTGATTCTTCCTGAATGTA 382
Query 300 CTGAGTTTAGTGTTCTTAAAACACTCTATGATATTGAGTGGCTATGCAAAGTATTGCCGA 359
||||||||||||||||||| ||| | ||||||||||||||| | || ||||||||||| |
Sbjct 383 CTGAGTTTAGTGTTCTTAAGACATTATATGATATTGAGTGGTTGTGTAAAGTATTGCCAA 442
Query 360 GGATGGAGTTGATGAAAGATCTTGTCTTTAAGTGGGCCGATGTATCGAGTGAGATTCTTG 419
|||||||||||||||||||||||||| |||||||| |||||| |||||||||||||||||
Sbjct 443 GGATGGAGTTGATGAAAGATCTTGTCGTTAAGTGGACCGATGCATCGAGTGAGATTCTTG 502
Query 420 TGATTGCTCAGAAGTGTGAGTTAGATTCTAGGATATTGGGTGTGAAAGTTAAGCTAGTTG 479
|||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 503 TGATTGCTCAGAAGTGTGAGTTGGATTCTAGGATATTGGGTGTGAAGGTTAAGCTAGTTG 562
Query 480 AGGTTACAGGGAAGATTTTAGAAGCGGTAGGTTATGGTATCGTGATTGTTCCTTCTAAAA 539
||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 563 AGGTTACAGGGAAGATTTTAGAAGCGGTAGGTTATGGAATTGTGATTGTTCCTTCTAAAA 622
Query 540 GCCGGACTTGTCTTCTGAAGATATGGTTGCCTTTCGTAAGGAGATTAAAGACTTTGGTTG 599
|| ||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 623 GCAGGACTTGTCTTTTGAAGATATGGTTGCCTTTCATAAGGAGATTAAAGACTTTGGTTG 682
Query 600 ATGCAGAAGGATCTGAGTCTGAATACAGAATGGATGAAGATCTTTGCGAATTTATAGAAG 659
||||||| |||| ||||| ||| || |||||||||||||||||||| |||||||||||||
Sbjct 683 ATGCAGAGGGATGTGAGTATGAGTATAGAATGGATGAAGATCTTTGTGAATTTATAGAAG 742
Query 660 GATCGATGGTGTCTTTGGTTTTGACATTACCTTCGAACGACCAAGCAGAAGTATTTGGGG 719
|||| ||||||||||||||||||||||| ||||| || |||||||||||||| ||||| |
Sbjct 743 GATCTATGGTGTCTTTGGTTTTGACATTGCCTTCAAATGACCAAGCAGAAGTGTTTGGTG 802
Query 720 AATGGATGAGAGGGATTGGGTTGGAAGGTGTGAAGTTTCCGGATTTGAGTGAAGCTTTTG 779
||||||||||||| |||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 803 AATGGATGAGAGGTATTGGGTTGGAAGGTGTGAAGTTTCCGGATTTAAGTGAAGCGTTTG 862
Query 780 AGGTTTGGTGTTATAGAAGTAAGTCTGCAAAGAGAAGGTTGTTGGAAAGATGTGATAGAC 839
||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct 863 AGGTTTGGTGTTATAGAAGTAAGTCTGCAAAGAGAAGATTGGTGGAAAGATGTGATAGAC 922
Query 840 TTGCAATTGTAAATCTTGATCATTGAAAG-TAGTATATCGGCTTCAAGATTCGGGAAACT 898
||||||||||||||||||| ||||||| | | ||||||| | ||| |||||||| |||||
Sbjct 923 TTGCAATTGTAAATCTTGACCATTGAATGGT-GTATATCAGTTTCGAGATTCGGTAAACT 981
Query 899 GGAAATGCAGATGTAGCTAAGCAATTTGAAGTTCCAAGCTTTTCTTCTTCCT-CAAGCCG 957
||||| |||||||||||||||||||||||||||| ||||||||||||||| ||||| |
Sbjct 982 TTAAATGAAGATGTAGCTAAGCAATTTGAAGTTCCAGGCTTTTCTTCTTCCTACAAGCTG 1041
Query 958 GTCTGTTTATTTCCAAAGGTTGAATGAAGATGGATAGTAGCGTTGTTCGATTCACAGTTC 1017
||||| |||||| | ||||| ||||||||||||||| |||| |||||| |||||||||||
Sbjct 1042 GTCTGCTTATTTTCGAAGGTCGAATGAAGATGGATAATAGCTTTGTTCAATTCACAGTTC 1101
Query 1018 ACTCACAATGCCTTGAGACTAGACCC-AAG-GAAGATAACCCGATAATTTCAACCGTATT 1075
|||||||||||||| ||| | ||||| ||| || | |||||||||||||||| ||||||
Sbjct 1102 ACTCACAATGCCTTAAGAGTGGACCCCAAGCGAGG-TAACCCGATAATTTCAGGCGTATT 1160
Query 1076 TGCTGCTTCATTGTAATTCTGGATTGTAGTAGGAGTGACAGAAAGCTCCTGATTCTTGTA 1135
||||||||| ||||||| || ||||||| ||||||||||| |||||| ||||||||||||
Sbjct 1161 TGCTGCTTCGTTGTAATGCTAGATTGTATTAGGAGTGACATAAAGCTTCTGATTCTTGTA 1220
Query 1136 ACTTTGATCCTGATTAA-TGATATAAATGGTGCGGTCTATGTTT 1178
||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1221 ACTTTGATCCTGATTAAATGATATAAATGGTGCGGTCTATGTTT 1264
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57831027840
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5