BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489926
Length=2139
Score E
Sequences producing significant alignments: (Bits) Value
AT4G10840.1 | Symbols: | Tetratricopeptide repeat (TPR)-like s... 3387 0.0
> AT4G10840.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr4:6656516-6659265 FORWARD LENGTH=2160
Length=2160
Score = 3387 bits (1834), Expect = 0.0
Identities = 2052/2155 (95%), Gaps = 24/2155 (1%)
Strand=Plus/Plus
Query 1 CTCGTCTCCTTCTCCACTTGGATCTCAAAA-TTCGATCCAAAACCAAATCCGCCATTAct 59
|||||||||||||||||||||||||||||| | ||||||||||||||||||||||| |||
Sbjct 1 CTCGTCTCCTTCTCCACTTGGATCTCAAAAGTCCGATCCAAAACCAAATCCGCCATAACT 60
Query 60 ctctctctctctctcACTT--C-C-------CACATTCATGCCAGCAATGCCAGGTCTCG 109
||||||||||||| ||||| | | |||||||||||||||||||||||||||||
Sbjct 61 CTCTCTCTCTCTCCCACTTCCCACAGAGAGACACATTCATGCCAGCAATGCCAGGTCTCG 120
Query 110 TCTCCGTCAAAACTCCAGCCGATACACCGCCGTTACGTGTAGCCGTACCAGACACGCAAC 169
|||| ||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 121 TCTCAGTCAAAACTCCTTCCGATACACCGCCGCTACGTGTAGCCGTACCAGACACGCAAC 180
Query 170 CTCTCTCAAACCCGCCGCGAACTCCGATGAAGAAGACTCCTTCCTCTACACCATCTCGAT 229
|||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 181 CTCTCTCAAACCCGCCGCGAACTCCGATGAAGAAAACCCCTTCCTCTACACCATCTCGAT 240
Query 230 CCAAACCATCACCAGGTAGATCCAGCGGCAAAAAAGATTCCCCAACCGTATCCTCCTCCG 289
|||||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 241 CCAAACCATCACCAAATAGATCCACCGGCAAAAAAGATTCCCCAACCGTATCCTCCT--- 297
Query 290 CCGCAGCCGCCGCCGTAATCGACGTCGACGATCCATCTCTAGATAATCCAGATCTTGGTC 349
| || |||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 298 -C-CA-CCGCAGCCGTAATCGACGTCGACGATCCATCTCTAGATAATCCAGATCTCGGTC 354
Query 350 CTTTCCTTCTCAAATTAGCTCGTGACGCTATTGCTTCTGGTGAAGGTCCTAATAAAGCAT 409
|||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 355 CTTTCCTTCTAAAATTAGCTCGTGACGCTATTGCTTCTGGTGAAGGTCCTAACAAAGCAT 414
Query 410 TAGATTACGCGATCCGAGCAACTAAATCGTTTGAGAGATGTTGCGCCGCCGTTGCTCCGC 469
||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 415 TAGATTACGCGATCCGAGCAACTAAGTCCTTTGAGAGATGTTGCGCCGCCGTTGCTCCGC 474
Query 470 CTATTCCCGGCGGTAGCGATGGTGGACCTGTTCTTGACCTAGCTATGAGTCTTCATGTTC 529
|||||||||| |||||||||||||||||||||||||| || |||||||| ||||||||||
Sbjct 475 CTATTCCCGGTGGTAGCGATGGTGGACCTGTTCTTGATCTCGCTATGAGCCTTCATGTTC 534
Query 530 TCGCTGCTATTTACTGTAGTCTCGGTCGATTCGATGAAGCAGTACCACCGCTTGAGCGAG 589
||||||||||||||||||||||||| ||||| |||||||| |||||||| ||||| ||||
Sbjct 535 TCGCTGCTATTTACTGTAGTCTCGGCCGATTTGATGAAGCTGTACCACCTCTTGAACGAG 594
Query 590 CTATTCAGGTCCCTGATCCGACTCGTGGTCCTGACCACTCTCTCGCTGCGTTTTCCGGTC 649
||||||| |||||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 595 CTATTCAAGTCCCTGATCCGACTCGTGGCCCTGACCACTCTCTCGCTGCGTTTTCTGGTC 654
Query 650 ATATGCAACTTGGTGATACGTTGTCTATGCTTGGTCAAATCGATAGATCTATTGCTTGTT 709
||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 655 ATATGCAACTTGGTGATACGTTGTCTATGCTTGGTCAGATTGATAGATCTATTGCTTGTT 714
Query 710 ATGAAGAAGGTCTTAAGATCCAGATCCAGACTTTAGGCGATACAGATCCACGAGTTGGAG 769
|||||||||||||||||||||||||||||||||| || ||||| |||||||||||||| |
Sbjct 715 ATGAAGAAGGTCTTAAGATCCAGATCCAGACTTTGGGTGATACTGATCCACGAGTTGGTG 774
Query 770 AAACTTGCAGGTACTTAGCAGAAGCATATGTTCAAGCAATGCAGTTCAATAAAGCGGAAG 829
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 775 AAACTTGCAGGTACTTAGCAGAAGCATATGTTCAAGCAATGCAGTTCAATAAAGCGGAAG 834
Query 830 AGTTGTGCAAGAAAACTCTAGAGATTCACCGTGCTCATAGTGAACCTGCTTCACTGGAGG 889
|||| |||||||| ||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 835 AGTTATGCAAGAAGACTCTAGAGATTCACCGAGCGCATAGTGAACCTGCTTCACTGGAGG 894
Query 890 AGGCAGCTGATAGGAGGCTGATGGCAATTATCTGTGAGGCTAAAGGAGATTATGAAAACG 949
| |||||||||||||| |||||||||||||||| |||||||||||||||||||||||||
Sbjct 895 AAGCAGCTGATAGGAGATTGATGGCAATTATCTGCGAGGCTAAAGGAGATTATGAAAACG 954
Query 950 CGCTTGAGCACCTTGTTCTTGCTAGTATGGCTATGATTGCGAGTGGACAAGAGTCTGAGG 1009
| |||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 955 CTCTTGAGCATCTTGTTCTTGCTAGTATGGCTATGATTGCGAGTGGACAAGAATCTGAGG 1014
Query 1010 TTGCATCGATTGATGTTAGCATTGGGAATATTTACATGTCGTTGTGCCGGTTTGATGAAG 1069
||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||
Sbjct 1015 TTGCATCGATTGATGTTAGTATTGGGAATATTTACATGTCGCTGTGCCGGTTTGATGAAG 1074
Query 1070 CTGTGTTCTCTTATCAGAAGGCTCTCACTGTGTTTAAGGCTTCTAAAGGAGAGACTCATC 1129
||||||| || |||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1075 CTGTGTTTTCATATCAGAAGGCTCTTACTGTGTTTAAGGCTTCTAAAGGAGAGACTCATC 1134
Query 1130 CGACGGTTGCATCAGTGTTTGTTAGATTGGCTGAGCTTTACCATAGGACAGGGAAACTCC 1189
|||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 1135 CGACGGTTGCGTCAGTGTTTGTTAGATTGGCTGAGCTTTACCATAGAACAGGGAAACTTC 1194
Query 1190 GTGAGTCTAAGTCTTACTGTGAGAATGCGTTGAGGATATACAACAAGCCAGTGCCCGGGA 1249
||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||
Sbjct 1195 GTGAGTCTAAGTCTTACTGTGAGAATGCGTTGAGGATATACAATAAGCCGGTGCCTGGGA 1254
Query 1250 CAACTGTGGAGGAGATTGCTGGTGGATTAACTGAGATTTCTGCAATTTATGAGTCTGTAG 1309
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1255 CAACTGTGGAGGAGATTGCTGGTGGATTAACTGAGATTTCTGCTATTTATGAGTCTGTAG 1314
Query 1310 ATGAACCTGAGGAAGCATTGAAGTTACTTCAGAAGTCGATGAAATTGCTTGAGGATAAGC 1369
||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||
Sbjct 1315 ATGAACCTGAGGAAGCATTGAAGCTACTTCAGAAGTCTATGAAATTGCTTGAGGATAAGC 1374
Query 1370 CAGGACAACAGAGCGCCATTGCAGGGTTAGAGGCACGGATGGGAGTTATGTATTACACAT 1429
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1375 CAGGACAGCAGAGCGCCATTGCAGGGTTAGAGGCACGGATGGGAGTTATGTATTACACAG 1434
Query 1430 TGGGGAGGTACGAGGACGCAAGAAACGCGTTTGAGAGTGCTGTGACAAAGCTACGGGCAG 1489
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1435 TGGGGAGGTACGAGGACGCAAGAAACGCGTTTGAGAGCGCTGTGACAAAGCTACGGGCAG 1494
Query 1490 CAGGTGAGAAATCTGCCTTCTTCGGTGTTGTATTAAACCAGATGGGACTAGCCTGCGTTC 1549
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1495 CAGGTGAGAAATCTGCCTTCTTCGGTGTTGTATTAAACCAGATGGGACTAGCCTGCGTTC 1554
Query 1550 AGCTTTTCAAGATTGATGAGGCGGGTGAGCTGTTTGAAGAAGCAAGAGGCATTCTTGAAC 1609
||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 1555 AGCTTTTCAAGATTGATGAAGCGGGTGAGCTGTTTGAAGAAGCAAGAGGTATTCTTGAAC 1614
Query 1610 AAGAACGTGGACCATGCGATCAGGACACTCTCGGTGTTTACAGCAATCTGGCTGCTACCT 1669
||||||||||||| |||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 1615 AAGAACGTGGACCGTGCGATCAGGACACTCTCGGTGTTTATAGCAATCTAGCTGCTACCT 1674
Query 1670 ATGACGCCATGGGAAGGATAGAGGATGCGATTGAGATATTAGAGCAGGTTCTGAAGCTGA 1729
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1675 ATGACGCTATGGGAAGGATAGAGGATGCGATTGAGATATTAGAGCAGGTTCTGAAGCTGA 1734
Query 1730 GAGAGGAAAAGCTCGGGACTGCGAATCCGGATTTTGAGGACGAGAAGAAACGTTTGGCCG 1789
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1735 GAGAGGAAAAGCTCGGGACTGCGAATCCGGATTTTGAAGACGAGAAGAAACGTTTGGCCG 1794
Query 1790 AGCTTTTGAAGGAAGCTGGGCGGTCGCGGAACTACAAAGCCAAGTCGCTCCAGAATCTGA 1849
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1795 AGCTTTTGAAGGAAGCTGGGCGGTCGCGGAACTACAAAGCCAAGTCGCTCCAGAATCTGA 1854
Query 1850 TTGATCCAAACGCAAGACCTCCAAAGAAAGAGTCTTCTGCTAAGAAATGGCCCAGCCTCG 1909
|||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1855 TTGATCCAAATGCAAGACCTCCGAAGAAAGAGTCTTCTGCTAAGAAATGGCCCAGCCTCG 1914
Query 1910 GTTTCAAGTTCTGAG-AAAAAAGtatcatatataataaatcatccacatatatattcaat 1968
||||||||||||||| |||||| ||||||||| |||||||||||||||||||||||||||
Sbjct 1915 GTTTCAAGTTCTGAGGAAAAAATTATCATATAAAATAAATCATCCACATATATATTCAAT 1974
Query 1969 attttattttatt---attgttatcattttt-atctgatctgttttctgtatcATAATTC 2024
||||||||||||| |||||||| |||||| ||||||||| |||||||||||||||| |
Sbjct 1975 ATTTTATTTTATTGTTATTGTTAT-ATTTTTTATCTGATCTATTTTCTGTATCATAAT-C 2032
Query 2025 TGAGGTTGATGAGTTAATTTCATGTATAGTGTTTTTATTTGAGTTTGGTGAAATACTGCC 2084
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2033 TGAGGTTGATGAATTAATTTCATGTATAGTGTTTTTATTTGAGTTTGGTGAAATACTGCC 2092
Query 2085 AAGATGTTGAGCTGTTTGTTTGAGTTTGAAATTTCTTTAAATCAATCACTTTTTT 2139
|||||| ||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 2093 AAGATGGTGAGCTGTTTGTTTGAGTTTGAAATTTCTTTAATTCAATCACTTTTTT 2147
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 106073751585
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5