BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489928
Length=947
Score E
Sequences producing significant alignments: (Bits) Value
AT4G10850.1 | Symbols: SWEET7, AtSWEET7 | Nodulin MtN3 family p... 1275 0.0
> AT4G10850.1 | Symbols: SWEET7, AtSWEET7 | Nodulin MtN3 family
protein | chr4:6674998-6676981 FORWARD LENGTH=1110
Length=1110
Score = 1275 bits (690), Expect = 0.0
Identities = 768/807 (95%), Gaps = 0/807 (0%)
Strand=Plus/Plus
Query 1 TTCATCATCACCAATTACACTCAAAATTATGGTGGTTGCACATTTAAACCTTCTTCGGAA 60
||||||| |||||||||||||||||||||||||| |||||||||| ||||||||||||||
Sbjct 43 TTCATCACCACCAATTACACTCAAAATTATGGTGTTTGCACATTTGAACCTTCTTCGGAA 102
Query 61 GATTGTGGGGATAATAGGAAACTTCATCGCTCTATGTCTGTTCTTGTCACCAACGCCAAC 120
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 103 GATTGTGGGGATTATAGGAAACTTCATCGCTCTATGTCTGTTCTTGTCACCAACGCCAAC 162
Query 121 ATTTGTCCGGATAGTGAAAAAGAAGTCAGTGGAGGAATATTCACCAATACCGTATTTAGC 180
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 163 ATTTGTTCGGATAGTGAAAAAGAAGTCAGTGGAGGAATATTCACCAATACCGTATTTAGC 222
Query 181 GACTCTCATAAACTGTTTGGTTTGGGTTCTTTACGGGCTACCAACGGTGCACCCGGACAG 240
|||||| ||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 223 GACTCTTATAAACTGTTTGGTTTGGGTTCTTTACGGACTACCAACGGTGCATCCGGACAG 282
Query 241 TACATTGGTCGTTACAATCAACGGAACGGGGATTTTGATCGAAATCGTTTTCCTTACCAT 300
||||||||| ||||||| ||||| || ||||| |||||||||||||| |||||||| ||
Sbjct 283 CACATTGGTCATTACAATAAACGGCACAGGGATCTTGATCGAAATCGTATTCCTTACGAT 342
Query 301 ATTTTTCGTTTATTGTGGCCGCCAAAAACAACGGTTGGTAATATCCGCTGTTATAGCGGG 360
||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||
Sbjct 343 CTTTTTCGTTTATTGTGGCCGCCAAAAACAGCGGTTGATAATATCCGCTGTTATAGCGGC 402
Query 361 TGAAACCGCGTTCATAGCTATTCTCGCGGTTTTGGTATTTACTCTCCAACACACTACCGA 420
|||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 403 TGAAACCGCGTTCATAGCTATTCTTGCGGTTTTGGTATTAACTCTCCAACACACTACCGA 462
Query 421 AAAACGTACTATGAGTGTTGGAATCGTATGTTGCGTTTTCAACGTTATGATGTACGCTTC 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 463 AAAACGTACTATGAGTGTTGGAATCGTATGTTGCGTTTTCAACGTTATGATGTACGCTTC 522
Query 481 TCCATTATCTGTTATGAAAATGGTAATAAAAACAAAAAGTGTGGAGTTCATGCCGTTTTG 540
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 523 TCCATTGTCTGTTATGAAAATGGTAATAAAAACAAAAAGTGTGGAGTTCATGCCGTTTTG 582
Query 541 GTTATCGGTAGCTGGATTTCTAAACGCAGGCGTTTGGACCATTTATGCTCTCATGCCTTT 600
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 583 GTTATCGGTAGCTGGATTTCTAAACGCAGGCGTTTGGACAATTTATGCTCTCATGCCTTT 642
Query 601 CGACCCATTCATGGCTATACCAAATGGAATAGGATGTTTATTTGGACTGGCTCAATTAAT 660
|||||||||||||||||||||||||||||| |||||||||||||| || |||||| ||||
Sbjct 643 CGACCCATTCATGGCTATACCAAATGGAATTGGATGTTTATTTGGGCTAGCTCAACTAAT 702
Query 661 ATTGTACGGTGCCTACTATAAGTCCACaaaaaaaaTATTGGCGGAAAGAGAAAAACAATC 720
|||||| |||||||||||||||||||| |||| |||| |||||||||||||||| ||| |
Sbjct 703 ATTGTATGGTGCCTACTATAAGTCCACCAAAAGAATAATGGCGGAAAGAGAAAACCAACC 762
Query 721 TGGTTACATCGGTTTATCAAGTGCGATCGCTCATACTGAATCTGAGAAAACCGCGAATAC 780
||||||| |||||||||||||||||||||||| ||| | |||||||||||||||||||||
Sbjct 763 TGGTTACGTCGGTTTATCAAGTGCGATCGCTCGTACCGGATCTGAGAAAACCGCGAATAC 822
Query 781 CAACCAAGAACTTAACAATGTTTAATT 807
||||||||||| |||||||||||||||
Sbjct 823 CAACCAAGAACCTAACAATGTTTAATT 849
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46315883534
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5