BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489930
Length=1131
Score E
Sequences producing significant alignments: (Bits) Value
AT4G10910.1 | Symbols: | unknown protein; Has 30201 Blast hits... 824 0.0
AT4G10920.1 | Symbols: KELP | transcriptional coactivator p15 (... 815 0.0
> AT4G10910.1 | Symbols: | unknown protein; Has 30201 Blast hits
to 17322 proteins in 780 species: Archae - 12; Bacteria -
1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses
- 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr4:6696712-6697455
FORWARD LENGTH=744
Length=744
Score = 824 bits (446), Expect = 0.0
Identities = 542/587 (92%), Gaps = 12/587 (2%)
Strand=Plus/Minus
Query 549 AGGCAGAGGTTGAAGAAACTAAAGCTTCTGCTGCAGCAAACCTGAGCTGATCAATCAAAG 608
|||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 579 AGGCGGAGGTTGAAGAAACTAAAGCTTCTGCTGCAGCAAACCGGAGCTGATCAATCAAAG 520
Query 609 CATGTGTATTGCCTTCAACCGCCAAAATCTCTTCAAGCTGCTTACTTCCGATCACAACTT 668
| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 519 CGTGTGTATTGCCTTCAACTGCCAAAATCTCTTCAAGCTGCTTACTTCCGATCACCACTT 460
Query 669 TCGCTTTCCACACACCATTTCTTCTTTGCGGTGACACTTGTATCTTTGGCCCAAGTACTC 728
|||||||||| || ||||||||||||||||| |||||||||||| |||||||||||||||
Sbjct 459 TCGCTTTCCAAACTCCATTTCTTCTTTGCGGCGACACTTGTATCCTTGGCCCAAGTACTC 400
Query 729 CTCTAGGGCTTGTTGTGCCTTGTCTAACAAGAGACCCTAAG-GTTTTCTCTCTAGTTATT 787
|||||||||||||||| ||||||||||||||| ||||| || |||||||| || ||||||
Sbjct 399 CTCTAGGGCTTGTTGTACCTTGTCTAACAAGATACCCT-AGTGTTTTCTCCCTTGTTATT 341
Query 788 GGCAACGAGCTACATCTCCGGCTTCTGTAATATTCTTCCATAATGTTTCTTGAATCTGTC 847
|||||||||||||||||||||||||||||||| ||||||| ||||||||||||| ||||
Sbjct 340 GGCAACGAGCTACATCTCCGGCTTCTGTAATACTCTTCCAGGATGTTTCTTGAATTTGTC 281
Query 848 GCAATTACAGTAACCGAACCACCACCATCGGATACTGCTCTTTGCGAACAATTCCCCATC 907
|||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 280 GCAATTACGGTAACCGAACCACCACCATCAGATACTGCTCTTTGCGAACAATTCCCCATC 221
Query 908 TTCACagaaacaaaaaaatgaaagaagaaa-a-gaaagaaTCAGAGAGTTTAAAACTAAA 965
||||||| ||| ||||| |||| ||| ||| | ||||||| |||||||||||||||||||
Sbjct 220 TTCACAGCAACTAAAAA-TGAA-GAAAAAATAAGAAAGAAACAGAGAGTTTAAAACTAAA 163
Query 966 TTTTGAGTTTGATTTGACTGTTCTTGGTTCAAGAATGAG-TTTATAAATACTAAATAGAG 1024
||||||||||||||||| |||| ||||||||||| | || ||||||||||||||| ||||
Sbjct 162 TTTTGAGTTTGATTTGATTGTTTTTGGTTCAAGA-T-AGGTTTATAAATACTAAAGAGAG 105
Query 1025 AGTAACTCTGAGACAAGGATTGATCAAACAGTCTCTTCGTTGTCTCTTAATCACTACTTG 1084
||||||||| ||||||||||||||||||||||||||| |||||||||||||| | |||
Sbjct 104 AGTAACTCTCAGACAAGGATTGATCAAACAGTCTCTTTGTTGTCTCTTAATCTC-ACTA- 47
Query 1085 CATTGCATGTGATACTCCACGCTGTGTATAATAATATTACCTTATCC 1131
| |||||||||||||||| ||||||| |||||| |||||||||||||
Sbjct 46 C-TTGCATGTGATACTCCGCGCTGTGCATAATACTATTACCTTATCC 1
> AT4G10920.1 | Symbols: KELP | transcriptional coactivator p15
(PC4) family protein (KELP) | chr4:6697674-6699199 REVERSE
LENGTH=814
Length=814
Score = 815 bits (441), Expect = 0.0
Identities = 515/550 (94%), Gaps = 7/550 (1%)
Strand=Plus/Plus
Query 2 AAAAACCCT-AAAATGGAGAAAGAGACGAAGGAGAAGATCGAGAAAACTGTAAGAGAGAT 60
||||||||| ||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 84 AAAAACCCTAAAAATGGAGAAAGAGACGAAGGAGAAGATCGAGAAAACTGTGATAGAGAT 143
Query 61 ACTCAATGAATCAGATATGAAAGAGATAACAGAGTTCAAAGTTCGTCAACTTGCTTCGGA 120
||||| |||||| |||||||||||||||||||||||||| |||||| |||| ||||||||
Sbjct 144 ACTCAGTGAATCGGATATGAAAGAGATAACAGAGTTCAAGGTTCGTAAACTCGCTTCGGA 203
Query 121 GAGACTCGGAATCGATCTCTCTGAGAAATCTCACAAAGCATTTGTACGAAGTGTCGTGGA 180
|| ||||| |||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 204 GAAACTCGCAATCGATCTCTCGGAGAAATCTCACAAAGCATTTGTACGAAGCGTCGTGGA 263
Query 181 AAAATTCCTTC-ACGAAGAGAGAGCGAGAGACTATGAAAAATCGCAAGTGAATAATGAAG 239
||||||| || ||||||||||||||||||| |||||||| || ||||||||||| ||||
Sbjct 264 GAAATTCC-TCGACGAAGAGAGAGCGAGAGAATATGAAAACTCACAAGTGAATAAGGAAG 322
Query 240 AAGAAGAGGGAGGTAACGATGGTGGTAAACGAAACAAAGAGTTTGATGATGACGGCGATC 299
||||||| |||| ||| ||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 323 AAGAAGATGGAGATAAGGATTGTGGTAAAGGAAACAAAGAGTTTGATGATGACGGCGATC 382
Query 300 TTATCATTTGCAGGCTATCGGATAAGAGAAGAGTGACGATTCAGGAATTTAAAGGAAAGA 359
|||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 383 TTATCATTTGCAGGTTATCGGATAAGAGAAGAGTGACGATTCAGGAATTTAAAGGGAAGA 442
Query 360 CTTTGGTTTCTATTAGAGAGTATTACAAGAAAGATGGCAAAGAACTTCCTACTTCTAAAG 419
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 443 GTTTGGTTTCTATCAGAGAGTATTACAAGAAAGATGGCAAAGAACTTCCTACTTCTAAAG 502
Query 420 GAATAAGCTTAACAGATGAACAATGGTCAACCTTCAAGAAAAACATTCCAGCCATCGAAA 479
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 503 GAATAAGCTTAACAGATGAACAATGGTCAACCTTCAAGAAAAACATGCCAGCCATCGAAA 562
Query 480 ATGCTGTCAAGAAAATGGAATCGCGTGCCTAAATGAAGAACATGTGATGATGCTT-ATCT 538
||||||||||||||||||||||||||| || ||||||||||||||||| | ||| ||||
Sbjct 563 ATGCTGTCAAGAAAATGGAATCGCGTGTCTGAATGAAGAACATGTGAT-A--CTTTATCT 619
Query 539 CTAAACATGT 548
||||||||||
Sbjct 620 CTAAACATGT 629
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55471602225
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5