BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489935
Length=1225
Score E
Sequences producing significant alignments: (Bits) Value
AT4G10950.1 | Symbols: | SGNH hydrolase-type esterase superfam... 1884 0.0
> AT4G10950.1 | Symbols: | SGNH hydrolase-type esterase superfamily
protein | chr4:6711386-6713512 REVERSE LENGTH=1319
Length=1319
Score = 1884 bits (1020), Expect = 0.0
Identities = 1175/1246 (94%), Gaps = 25/1246 (2%)
Strand=Plus/Plus
Query 1 ATGTCGATCAAGCTTCTCGTTCTTGTTTTCTCTCTTCTGATAATCTTCACGAGACCCAAA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGTCGATCAAGCTTCTCGTTCTTGTTTTCTCTCTTCTGATAATCTTCACGAGACCCAAA 60
Query 61 TTGATCGCCGATCATCACTTAACTACAAGAATCT---C------T-C--CG-TTT-TA-- 104
|||||||||||||||||||||||||||||||||| | | | || ||| ||
Sbjct 61 TTGATCGCCGATCATCACTTAACTACAAGAATCTCGCCGATTTATCCTTCGATTTCTACG 120
Query 105 --T---CCTTCGATTCCGCCGTTTTTACCTCCATCGCCGTCGCTCAGAGCCCAATCTCCG 159
| ||||||||||||||||||||||||||||||||||||| |||||| |||||||||
Sbjct 121 TTTCAGCCTTCGATTCCGCCGTTTTTACCTCCATCGCCGTCGCGCAGAGCACAATCTCCG 180
Query 160 GTGGTGAAGCCGTCTTTGCCTTTTGTACCGGCGTTGTTCGTGTTCGGAGATTCTTCTGTA 219
|||||||||||||||||| |||||||||||||||||||| ||||||||||| || ||
Sbjct 181 ACGGTGAAGCCGTCTTTGCCATTTGTACCGGCGTTGTTCGTTTTCGGAGATTCCTCAGTC 240
Query 220 GATAGTGGAACCAATAACTTTCTTGGAACCTTGGCGAGAGCAGATCGGCTTCCGTACGGT 279
||||| |||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 241 GATAGCGGAACCAATAACTTTCTTGGAACCTTAGCGAGAGCAGATCGGCTTCCCTACGGT 300
Query 280 AGAGATTTTGATACGCATCAACCAACGGGAAGGTTTTGCAATGGAAGAATCCCAGTTGAT 339
| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 CGCGATTTCGATACGCATCAACCAACGGGAAGGTTTTGCAATGGAAGAATCCCAGTTGAT 360
Query 340 TATCTAGGCTTACCATTCGTTCCTAGCTATCTTGGACAAACTGGGACTGTTGAAGACATG 399
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 TATCTAGGCTTACCATTCGTTCCTAGCTATCTTGGACAAACTGGGACTGTTGAAGACATG 420
Query 400 TTTCAAGGAGTAAACTATGCATCAGCTGGTGCTGGAATCATCTTATCAAGTGGATCCGAA 459
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 421 TTTCAAGGAGTAAACTATGCATCAGCTGGTGCTGGAATCATCTTATCAAGTGGATCTGAA 480
Query 460 CTGGGCCAGCGGGTTTCATTCGCGATGCAGGTTGAGCAGTTTGTTGATACATTCCAGCAG 519
||||||||||||||||||| |||||||| |||||||||||||||||||| || ||||||
Sbjct 481 TTGGGCCAGCGGGTTTCATTTGCGATGCAAGTTGAGCAGTTTGTTGATACGTTTCAGCAG 540
Query 520 ATGATACTGAGTATTGGGGAGGAGGCTTCGGAACGTTTGGTCTCAAACTCGGTTTTCTAC 579
||||||||||||||||||||| | |||||||||||||| || ||||||||||||||||||
Sbjct 541 ATGATACTGAGTATTGGGGAGAAAGCTTCGGAACGTTTAGTGTCAAACTCGGTTTTCTAC 600
Query 580 ATATCGATTGGAGTGAATGATTACATACATTTCTACATCAGAAACATCTCCAATGTGCAG 639
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 ATATCGATTGGAGTGAATGATTACATACATTTCTACATCAGAAACATCTCCAATGTGCAG 660
Query 640 AATCTCTATACTCCTTGGAATTTTAATCAGTTCTTGGCTTCTAATATGAGACAGGAGCTC 699
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 AATCTCTATACTCCATGGAATTTTAATCAGTTCTTGGCTTCTAATATGAGACAGGAGCTC 720
Query 700 AAGACCCTGTACAATGTTAAAGTGAGGAGGATGGTGGTGATGGGACTGCCACCTATTGGC 759
|||||| |||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 721 AAGACCTTGTACAATGTCAAGGTGAGGAGGATGGTGGTGATGGGACTGCCACCTATTGGC 780
Query 760 TGTGCACCATACTACATGTGGAAATACAGGAGCCAGAACGGAGAATGTGCAGAAGAAGTG 819
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 781 TGTGCACCATACTACATGTGGAAATACAGAAGCCAGAACGGAGAATGTGCAGAAGAAGTG 840
Query 820 AACAGCATGATCATGGAATCCAACTTTGTCATGAGATACACTGTAGATAAACTCAACCGT 879
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 AACAGCATGATCATGGAATCCAACTTTGTCATGAGATACACTGTAGATAAACTCAACCGT 900
Query 880 GAGCTTCCAGGCGCATCCATTATCTACTGCGACGTGTTCCAAAGCGCTATGGACATCCTC 939
||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 901 GAGCTTCCAGGGGCATCCATTATCTACTGTGACGTGTTCCAAAGCGCTATGGACATTCTC 960
Query 940 AGGAACCACCAACTCTATGGTTTTAATGAGACGACAGATGCTTGTTGTGGGCTAGGGAGG 999
||||||||||||| ||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 961 AGGAACCACCAACACTACGGTTTTAATGAGACGACAGATGCGTGTTGTGGGCTAGGGAGG 1020
Query 1000 TACAAAGGATGGCTTCCATGCATCTCACCGGAGATGGCTTGCTCCGACGCCTCCGGTCAT 1059
|||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 1021 TACAAAGGATGGCTTCCATGCATCTCGCCGGAGATGGCTTGCTCTGACGCCTCCGGTCAC 1080
Query 1060 CTATGGTGGGACCAGTTTCATCCTACAGACGCCGTTAACGCCATCCTCGCCGACAATGTA 1119
|| ||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 1081 CTCTGGTGGGACCAGTTTCATCCTACAGACGCCGTTAACGCCATTCTAGCCGACAATGTA 1140
Query 1120 TGGAATGGTCGTCACGTGGACATGTGTTACCCTACTAACCTAGAAACTATGCTTCACTCT 1179
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1141 TGGAATGGTCGCCACGTGGACATGTGTTACCCTACTAACCTAGAAACTATGCTTCATTCT 1200
Query 1180 TAAATAAATCAGCTGAGAAAATAAAAATGTACATAAAAAACATAGT 1225
||||| ||||||||| ||||||||||||||||||||||||||
Sbjct 1201 TAAAT----CAGCTGAGAGGATAAAAATGTACATAAAAAACATAGT 1242
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60190453455
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5