BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489939
Length=800
Score E
Sequences producing significant alignments: (Bits) Value
AT4G10970.6 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 455 3e-127
> AT4G10970.6 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: cellular_component unknown; EXPRESSED IN: 25
plant structures; EXPRESSED DURING: 14 growth stages; BEST
Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G23910.2);
Has 72 Blast hits to 50 proteins in 11 species:
Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants
- 72; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
| chr4:6719718-6721831 REVERSE LENGTH=846
Length=846
Score = 455 bits (246), Expect = 3e-127
Identities = 297/319 (93%), Gaps = 13/319 (4%)
Strand=Plus/Plus
Query 81 ATGGACATGTCTTTAGATGAAATTATCAAGATGGAAAAGAGCAATAGCAATGTGAATAAA 140
|||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||
Sbjct 1 ATGGACATGTCTTTAGATGAGATTATCAAGATGGAAAAGAGCAATACCAATGTGAATAAG 60
Query 141 GGCAAGAAACAGAGAGTATCGAATAAAAAGGAGAAATTTAATGGTGCTGCGAAGAATAGT 200
||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 61 GGCAAGAAACAGAGAGTATTGAATAAAAAGGAGAAATTTAGTGGTGCTGCGAAGAATAGT 120
Query 201 GCGGTGAAAGCACAGCGTTATATGGACTCACGGTCTGATGTTAGACAGGGTGCTTTTGCT 260
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 121 GCGGTGAAAGCACAGCGTTATATGGACTCTCGGTCTGATGTTAGACAGGGTGCTTTTGCT 180
Query 261 AAGA-GAAGGTCTAATTTCCAAGGGAACGGAAACCAGTTTCCTGTAACAACTACCGTTGC 319
|||| || |||||||||||||||| || | |||||||||||||||||| ||||||||
Sbjct 181 AAGAAGA-GGTCTAATTTCCAAGG-AA---A--CCAGTTTCCTGTAACAACAACCGTTGC 233
Query 320 TCGTAAAGCCGCTTCTGCTAATCAACTCCGTGGTAGACCTTATAA-GGCTGGAAGGATGA 378
|||||||||||||||||||| || | | |||||||||||||||| || |||||||||||
Sbjct 234 TCGTAAAGCCGCTTCTGCTACTC--CGC-GTGGTAGACCTTATAATGG-TGGAAGGATGA 289
Query 379 CTAATACGAATCAATCAAG 397
|||||||||||||||||||
Sbjct 290 CTAATACGAATCAATCAAG 308
Score = 414 bits (224), Expect = 5e-115
Identities = 273/296 (92%), Gaps = 5/296 (2%)
Strand=Plus/Plus
Query 398 GTTTATTACTCCACCAGCTCAGAATAGATCTGCACAAAGAGGGTTTGTCACTAAGACACA 457
||||||| |||||||||||||||||||| || ||||||||||||||||| || | ||
Sbjct 555 GTTTATTGCTCCACCAGCTCAGAATAGAGCTTCACAAAGAGGGTTTGTC-GGAA-A-GCA 611
Query 458 GCAGCAGCAGCAAAGGGAGAAGATAGAGCAGAAGCAAGCAAATGGAGGAGGAGGTGGGCA 517
|||||||||||||||||||||||||| |||| |||| ||||||||||||||||| |||||
Sbjct 612 GCAGCAGCAGCAAAGGGAGAAGATAGTGCAGCAGCAGGCAAATGGAGGAGGAGGAGGGCA 671
Query 518 GAGACAATGGCCTCAGACGCTGGACTCTCGGTTTGCGAACATGAAGGAAGAGAGAATGAG 577
|| |||||||||||||| ||||| ||||||||||| |||||||||||||||||||||||
Sbjct 672 AAGGCAATGGCCTCAGACACTGGATTCTCGGTTTGCAAACATGAAGGAAGAGAGAATGAG 731
Query 578 AATGAGAAGGTTTGCAGACAATAGAAGCAATGTAGGCAACAATGGCGCTGGAT-TGCAGC 636
||||||||||||||||||||||||||||||||||||||||||||| ||||||| | || |
Sbjct 732 AATGAGAAGGTTTGCAGACAATAGAAGCAATGTAGGCAACAATGGAGCTGGATCT-CATC 790
Query 637 AGCAGCAGCGTTCGATGGTCCCGTGGGTGAGAAGAGCTACAAGATTCCCTAACTGA 692
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 791 AGCAGCAGCGTTCGATGGTCCCGTGGGTGAGAAGAGCTACAAGATTCCCCAACTGA 846
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38931463925
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5