BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489940
Length=911
Score E
Sequences producing significant alignments: (Bits) Value
AT4G11010.1 | Symbols: NDPK3 | nucleoside diphosphate kinase 3 ... 1279 0.0
AT4G23900.1 | Symbols: | Nucleoside diphosphate kinase family ... 725 0.0
> AT4G11010.1 | Symbols: NDPK3 | nucleoside diphosphate kinase
3 | chr4:6732580-6734361 REVERSE LENGTH=980
Length=980
Score = 1279 bits (692), Expect = 0.0
Identities = 754/784 (96%), Gaps = 3/784 (0%)
Strand=Plus/Plus
Query 1 TCTCCACATTTTCCAAGGCTTCAGTTTCACTTCATCACTCTCTCTCTGCAAAACaa-aaa 59
||||||||||||||||||||||||||||||||||||| | |||||||||||| || |||
Sbjct 5 TCTCCACATTTTCCAAGGCTTCAGTTTCACTTCATCA--CACTCTCTGCAAAAAAACAAA 62
Query 60 aaTGAGCTCCCAAATCTGCAGATCTGCTTCCAAAGCAGCCAAATCTCTTCTTTCTTCAGC 119
||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 63 AATGAGCTCTCAAATCTGCAGATCTGCTTCCAAAGCAGCCAAATCTCTTCTCTCTTCAGC 122
Query 120 TAAAAATGCTCGTTTCTTCTCCGAAGGAAGAGCCATTGGTGCTGCGGCAGCGGTTTCGGC 179
|||||||||||| |||||||| |||||| |||||||||||||||||||||||||||||||
Sbjct 123 TAAAAATGCTCGCTTCTTCTCTGAAGGACGAGCCATTGGTGCTGCGGCAGCGGTTTCGGC 182
Query 180 GTCGGGGAAGATTCCTTTGTATGCATCTAACTTTGTAAGATCATCAGGTTCTGGTGTTTC 239
||| || || ||||||||||||||||||||||||| |||||||||||||||||||||| |
Sbjct 183 GTCAGGAAAAATTCCTTTGTATGCATCTAACTTTGCAAGATCATCAGGTTCTGGTGTTGC 242
Query 240 CTCAAAGAGTTGGATCACTGGACTCTTAGCTCTTCCTGCTGCAGCCTATATGATTCAAGA 299
|| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 243 TTCTAAGAGTTGGATCACTGGACTCTTAGCTCTTCCTGCTGCAGCTTATATGATTCAAGA 302
Query 300 TCAAGAGGTTCTTGCTGCTGAGATGGAACGAACTTTTATCGCTATCAAGCCTGATGGAGT 359
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 303 TCAAGAGGTTCTTGCTGCTGAGATGGAACGAACTTTTATTGCTATCAAGCCTGATGGTGT 362
Query 360 GCAGCGAGGACTGATATCAGAGATCATTTCTCGATTCGAACGCAAGGGATTCAAGCTTGT 419
||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 363 GCAAAGAGGACTGATATCAGAGATCATTTCTCGATTCGAACGCAAGGGATTCAAGCTAGT 422
Query 420 TGGTATCAAAGTCATTGTTCCTTCCAAAGATTTCGCACAAAAGCATTACCATGATCTTAA 479
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 423 TGGTATCAAAGTCATTGTTCCTTCTAAAGATTTCGCACAAAAGCATTACCATGATCTTAA 482
Query 480 GGAAAGACCTTTCTTCAATGGCCTGTGTGACTTCCTTAGCTCTGGTCCTGTTATTGCCAT 539
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 483 GGAAAGACCTTTCTTCAATGGTTTGTGTGACTTCCTTAGCTCTGGTCCTGTTATTGCCAT 542
Query 540 GGTCTGGGAAGGAGATGGTGTGATCAGATACGGACGTAAACTAATTGGAGCCACTGATCC 599
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 543 GGTCTGGGAAGGAGATGGTGTGATCAGATACGGACGTAAACTGATTGGAGCCACTGATCC 602
Query 600 TCAGAAATCTGAGCCTGGAACAATCCGAGGAGATCTTGCAGTTACTGTTGGCAGGAACAT 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 603 TCAGAAATCTGAGCCTGGAACAATCCGAGGAGATCTTGCAGTTACTGTTGGCAGGAACAT 662
Query 660 AATCCATGGAAGTGATGGACCAGAGACAGCAAAGGATGAGATCAGTCTGTGGTTTAAGCC 719
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 663 AATCCATGGAAGTGATGGACCAGAGACTGCAAAGGATGAGATCAGTCTGTGGTTTAAGCC 722
Query 720 TCAAGAACTTGTTTCTTACACCAGTAACTCTGAGAAGTGGCTCTATGGCGACAACTAAAT 779
||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 723 TCAAGAACTTGTTTCTTACACTAGTAACTCTGAGAAGTGGCTCTATGGTGACAACTAAAT 782
Query 780 CCCt 783
||||
Sbjct 783 CCCT 786
Score = 60.2 bits (32), Expect = 3e-08
Identities = 32/32 (100%), Gaps = 0/32 (0%)
Strand=Plus/Plus
Query 880 TTTGAATCTATATTGTTCAATTCTTCTCTCTT 911
||||||||||||||||||||||||||||||||
Sbjct 949 TTTGAATCTATATTGTTCAATTCTTCTCTCTT 980
> AT4G23900.1 | Symbols: | Nucleoside diphosphate kinase family
protein | chr4:12424451-12426528 FORWARD LENGTH=978
Length=978
Score = 725 bits (392), Expect = 0.0
Identities = 620/728 (85%), Gaps = 23/728 (3%)
Strand=Plus/Plus
Query 58 aaaaTGAGCTCCCAAATCTGCAGATCTGCTTCCAAAGCAGCCAAATCTCTTCTTTCTTCA 117
|||||||||||||||||||||||||||||||| | |||||||| |||||||||||||||
Sbjct 52 AAAATGAGCTCCCAAATCTGCAGATCTGCTTCTAGAGCAGCCAGGTCTCTTCTTTCTTCA 111
Query 118 GCTAAAAATGCTCGTTTCTTCTCCGAAGGAAGAGCCATTGGTGCTGCGGCAGCG-GTTTC 176
|| || ||||||||||||||||||||||| ||||||||||||| || || | | | |
Sbjct 112 GCCAAGAATGCTCGTTTCTTCTCCGAAGGCCGAGCCATTGGTGCAGC--AAGTGTGGTGC 169
Query 177 -GGCGTCGGGGAAGA-TTCCTTTGTATGCATCTAACTTTGTAAGATCATCAGGTTCTGGT 234
||| | |||| | | ||| ||||||||| ||||||| || | ||| |||||| |
Sbjct 170 ATGCGAC-TGGAAAAGTCCCTCAGTATGCATCCAACTTTGGAA-A--ATCGGGTTCT-G- 223
Query 235 GTTTC--CTCAAAGAGTTGGATCACTGGACT-CTTAGCTCTTCCTGCTGCAGCCTAT-AT 290
| ||| ||| || || |||||||| ||||| ||| ||||||||||||||||||| | ||
Sbjct 224 GCTTCGTCTCTAATAGCTGGATCACCGGACTCCTT-GCTCTTCCTGCTGCAGCCT-TCAT 281
Query 291 GATTCAAGATCAAGAGGTTCTTGCTGCTGAGATGGAACGAACTTTTATCGCTATCAAGCC 350
| | |||||||| || | |||||||| ||||||||||| ||||| ||||||||||| ||
Sbjct 282 GCTCCAAGATCAGGAAGCACTTGCTGCAGAGATGGAACGCACTTTCATCGCTATCAAACC 341
Query 351 TGATGGAGTGCAGCGAGGACTGATATCAGAGATCATTTCTCGATTCGAACGCAAGGGATT 410
|||||||||||||||||||||||||||||| |||||| | || ||||||||||| ||||
Sbjct 342 TGATGGAGTGCAGCGAGGACTGATATCAGAAATCATTACACGGTTCGAACGCAAAGGATA 401
Query 411 CAAGCTTGTTGGTATCAAAGTCATTGTTCCTTCCAAAGA-TTTCGCACAAAAGCATTACC 469
|||||||||||| || |||||||| |||||||| |||| |||||| || ||||||||||
Sbjct 402 CAAGCTTGTTGGCATTAAAGTCATGGTTCCTTC-AAAGGGTTTCGCGCAGAAGCATTACC 460
Query 470 ATGATCTTAAGGAAAGACCTTTCTTCAATGGCCTGTGTGACTTCCTTAGCTCTGGTCCTG 529
||||||| ||||| |||||||||||||| ||| ||||| ||||||||||||| || ||||
Sbjct 461 ATGATCTAAAGGAGAGACCTTTCTTCAACGGCTTGTGTAACTTCCTTAGCTCAGGCCCTG 520
Query 530 TTATTGCCATGGTCTGGGAAGGAGATGGTGTGATCAGATACGGACGTAAACTAATTGGAG 589
|| |||||||||| |||||||| || || ||||| ||||||||||||||||| |||||||
Sbjct 521 TTGTTGCCATGGTATGGGAAGGTGAAGGAGTGATTAGATACGGACGTAAACTGATTGGAG 580
Query 590 CCACTGATCCTCAGAAATCTGAGCCTGGAACAATCCGAGGAGATCTTGCAGTTACTGTTG 649
||||||||||||||||||| || |||||||| |||||||| ||||| || ||| |||||
Sbjct 581 CCACTGATCCTCAGAAATCAGAACCTGGAACTATCCGAGGCGATCTCGCTGTTGTTGTTG 640
Query 650 GCAGGAACATAATCCATGGAAGTGATGGACCAGAGACAGC-AAAGGATGAGATCAGTCT- 707
| |||||||| || |||||||| ||||||||||||||||| |||| | |||||||| ||
Sbjct 641 GAAGGAACATTATACATGGAAGCGATGGACCAGAGACAGCTAAAG-ACGAGATCAG-CTT 698
Query 708 GTGGTTTAAGCCTCAAGAACTTGTTTCTTACACCAGTAACTCTGAGAAGTGGCTCTATGG 767
||||||||||||| ||||||| ||||||||||| |||||| ||||||||||| |||| ||
Sbjct 699 GTGGTTTAAGCCTGAAGAACTCGTTTCTTACACTAGTAACGCTGAGAAGTGGATCTACGG 758
Query 768 CGACAACT 775
| | ||||
Sbjct 759 CCAGAACT 766
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44507454242
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5