BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489943
Length=1884
Score E
Sequences producing significant alignments: (Bits) Value
AT4G11050.1 | Symbols: AtGH9C3, GH9C3 | glycosyl hydrolase 9C3 ... 2922 0.0
AT1G64390.1 | Symbols: AtGH9C2, GH9C2 | glycosyl hydrolase 9C2 ... 680 0.0
AT1G70710.1 | Symbols: ATGH9B1, CEL1, GH9B1 | glycosyl hydrolas... 67.6 4e-10
> AT4G11050.1 | Symbols: AtGH9C3, GH9C3 | glycosyl hydrolase 9C3
| chr4:6747467-6751311 REVERSE LENGTH=1912
Length=1912
Score = 2922 bits (1582), Expect = 0.0
Identities = 1788/1888 (95%), Gaps = 11/1888 (1%)
Strand=Plus/Plus
Query 1 ATGGGTTCTACG-ACCACCATTTCGATTCTTGTTCTTCTTCTTCTAGGGTTGGTTCAACT 59
|||||||||| | ||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1 ATGGGTTCTA-GAACCACCATTTCGATTCTTGTTGTTCTTCTTCTAGGGTTGGTTCAACT 59
Query 60 TGCAGTTTCAGGGCATGACTATAAACAAGCTCTAAGCAAAAGCATTCTCTTCTTTGAAGC 119
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 60 TGCAATTTCAGGGCATGACTATAAACAAGCTCTAAGCAAAAGCATTCTCTTCTTTGAAGC 119
Query 120 TCAGAGATCAGGACACCTCCCTCCTAACCAGAGAGTTTCATGGCGATCTCATTCCGGTCT 179
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 120 TCAGAGATCAGGACACCTCCCTCCTAACCAAAGAGTTTCATGGCGATCTCATTCCGGTCT 179
Query 180 TTACGATGGCAAATCAAGTGGCGTGGATCTAGTGGGAGGATATTATGACGCCGGAGACAA 239
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 180 TTACGATGGCAAATCAAGCGGCGTGGATCTAGTGGGAGGATATTATGACGCCGGAGACAA 239
Query 240 TGTGAAATTCGGGCTCCCAATGGCTTTCACGGTGACAACAATGTGTTGGAGCATCATCGA 299
||||||||||||||| || |||||||||||||||||||||||||||||||||||||| ||
Sbjct 240 TGTGAAATTCGGGCTTCCGATGGCTTTCACGGTGACAACAATGTGTTGGAGCATCATAGA 299
Query 300 ATACGGTGGCCAGCTGAAATCTAACGGCGAACTTGGTCATGCCATTGACGCCGTTAAGTG 359
|||||||||||||||| |||| |||||||||||||| |||||||||||||||||||||||
Sbjct 300 ATACGGTGGCCAGCTGGAATCCAACGGCGAACTTGGCCATGCCATTGACGCCGTTAAGTG 359
Query 360 GGGAACTGATTATTTCATTAAAACCCACCCTGAACCTAACGTCCTCTATGGAGAGGTGGG 419
|||||||||||||||||||||| ||||||||||||||||||| |||||||||||||| ||
Sbjct 360 GGGAACTGATTATTTCATTAAAGCCCACCCTGAACCTAACGTTCTCTATGGAGAGGTAGG 419
Query 420 AGATGGTAAGTCGGACCATTATTGTTGGCAAAGGCCAGAGGAAATGACCACTGATCGTAA 479
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 420 AGATGGTAAGTCGGACCATTATTGTTGGCAAAGGCCAGAGGAAATGACTACTGATCGTAG 479
Query 480 GGCTTACAAAATTGACCGGAACAATCCCGGTTCAGATTTAGCCGGAGAAACCGCTGCCGC 539
||||||||||||||||||||||||||||||||| ||| | ||||||||||||||||||||
Sbjct 480 GGCTTACAAAATTGACCGGAACAATCCCGGTTCGGATCTCGCCGGAGAAACCGCTGCCGC 539
Query 540 AATGGCTGCGGCTTCCATCGTTTTCCGCCGCTCTGATCCATCATACTCTGCTGAGCTACT 599
||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 540 AATGGCTGCCGCTTCCATCGTTTTCCGTCGCTCTGATCCATCATACTCTGCTGAGCTACT 599
Query 600 CCGTCACGCCCATCAGCTATTTGAATTTGCGGACAAATACAGAGGCAAATATGACAGTAG 659
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 600 CCGTCACGCACATCAGCTATTTGAATTTGCGGACAAATACAGAGGCAAATATGACAGCAG 659
Query 660 CATTACCGTGGCACAAAAATACTACCGATCCGTCAGCGGTTACAATGATGAATTACTATG 719
||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 660 CATTACCGTGGCACAAAAATATTACCGATCCGTCAGCGGTTACAATGATGAGTTACTATG 719
Query 720 GGCTGCTGCATGGTTATACCAAGCAACCAATGATAAATATTATCTAGATTACCTCGGCAA 779
||||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 720 GGCTGCTGCGTGGTTATACCAAGCAACAAATGATAAATACTATCTAGATTACCTCGGCAA 779
Query 780 GAATGGTGACTCAATGGGCGGTACGGGCTGGTCGATGACTGAATTTGGTTGGGACGTTAA 839
|||||| ||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 780 GAATGGCGACTCAATGGGTGGTACGGGCTGGTCGATGACCGAATTTGGTTGGGACGTTAA 839
Query 840 GTATGCTGGCGTTCAAACCCTTGTCGCTAAGGTTTTGATGCAAGGGAAAGGTGGAGAACA 899
||||||||| |||||||||||||| || ||||||||||||||||| ||||||||||||||
Sbjct 840 GTATGCTGGTGTTCAAACCCTTGTGGCCAAGGTTTTGATGCAAGGAAAAGGTGGAGAACA 899
Query 900 CACTGCCGTGTTCGAGCGGTACCAACAGAAAGCAGAACAGTTTATGTGTTCGTTGTTAGG 959
||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 TACTGCTGTGTTCGAGAGGTACCAACAGAAAGCAGAACAGTTTATGTGTTCGTTGTTAGG 959
Query 960 TAAAAGCACGAAGAACATTAAGAAAACTCCCGGCGGTCTAATTTTCCGACAAAGCTGGAA 1019
|||||| || |||||||||||||||||||| || ||| | ||||||||||||||||||||
Sbjct 960 TAAAAGTACAAAGAACATTAAGAAAACTCCAGGGGGTTTGATTTTCCGACAAAGCTGGAA 1019
Query 1020 CAATATGCAGTTTGTCACGAGTGCCTCTTTCTTAGCCGCCGTTTACTCCGACTATCTCTC 1079
||||||||||||||||||||||| || ||||||||| | ||||||||||||||||||||
Sbjct 1020 TAATATGCAGTTTGTCACGAGTGCTTCATTCTTAGCCACTGTTTACTCCGACTATCTCTC 1079
Query 1080 -TTCATCCAAAAGAGATCTCCGTTGTTCTCAAGGAAACATTTCTCCATCCCAACTCCTAG 1138
| | |||||||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 1080 GTAC-TCCAAAAGAGATCTTCTTTGTTCTCAAGGAAACATTTCTCCATCCCAACTCCTAG 1138
Query 1139 -ATTTCTCAAAATCACAGGTGGATTACATTCTCGGAGACAACCCTAGAGCGACAAGTTAC 1197
|||| || ||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 1139 AATTT-TCTAAATCACAGGTGGATTACATTCTTGGAGACAACCCTAGAGCAACAAGTTAC 1197
Query 1198 ATGGTCGGATACGGAGAGAACTATCCACGACAAGTTCATCATCGTGGTTCGTCTATTGTC 1257
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1198 ATGGTCGGATACGGAGAGAACTATCCACGACAAGTTCATCATCGTGGTTCGTCTATTGTC 1257
Query 1258 TCCTTCAATGTCGATCAAAAGTTCGTGACTTGCCGTGGCGGTTACGCCACATGGTTTAGC 1317
|||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 1258 TCCTTCAATGTCGATCAAAAGTTCGTTACTTGCCGTGGTGGTTACGCCACATGGTTTAGC 1317
Query 1318 CGCAAAGGAAGCGATCCGAATGTTTTAACCGGAGCTATAGTGGGTGGACCCGACGCATAC 1377
|| |||||||||||||| |||||||||||||||||| ||||||||||||||||||| |||
Sbjct 1318 CGGAAAGGAAGCGATCCAAATGTTTTAACCGGAGCTCTAGTGGGTGGACCCGACGCCTAC 1377
Query 1378 GATAACTTCGCTGACCAACGGGACAATTATGAGCAAACCGAACCAGCAACTTACAACAAC 1437
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1378 GATAACTTCGCTGACCAACGGGACAATTATGAGCAAACCGAACCAGCAACTTACAACAAC 1437
Query 1438 GCGCCACTTCTTGGTGTACTAGCCCGGTTGATTTCCGGTCCGACCGGTTTTGACCAGCTG 1497
||||| |||||||||||| |||||||||| ||||||||| ||||||||||||||||||||
Sbjct 1438 GCGCCTCTTCTTGGTGTATTAGCCCGGTTAATTTCCGGTTCGACCGGTTTTGACCAGCTG 1497
Query 1498 CTTCCCGGTGTTAGTCCGACTCCAAGTCCGGTTATCATAAAACTAGCACCGGTACCAAAG 1557
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
Sbjct 1498 CTTCCCGGTGTTAGTCCGACTCCAAGTCCGGTTATCATAAAACCAGCACCGGTACCACA- 1556
Query 1558 AAG-AAACCCACAACACCTCCTGTAGCTTCTTCTCCTAGTCCCATTACCATATCGCAGAA 1616
||| ||||| |||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1557 AAGGAAACCGACAAAACCTCCTGCAGCTTCTTCTCCTAGTCCCATTACCATATCGCAGAA 1616
Query 1617 GATGACACTCTCATGGAAGAACGAGGGAAAGGTGTACTATCGATACTCAACAAGATTAAC 1676
||||||| ||||||||||||||||||||| ||||||||||||||||| || | ||||||
Sbjct 1617 GATGACAAACTCATGGAAGAACGAGGGAAAAGTGTACTATCGATACTCTACGATATTAAC 1676
Query 1677 CAATAGATCTACAAAAACATTAAAAATTTTGAAGATATCAATCACCAAGCTCTATGGTCC 1736
|||||||||||| |||||||| ||||||||||||||||||||||||||||| || |||||
Sbjct 1677 CAATAGATCTACGAAAACATTGAAAATTTTGAAGATATCAATCACCAAGCTATACGGTCC 1736
Query 1737 TATATGGGGTGTGACGAAAACCGGAACTTCATTCACCTTTCCCTCATGGATGCAATCGTT 1796
||||||||||||||||||||||||| |||||||| ||||| |||||||||||||| ||
Sbjct 1737 AATATGGGGTGTGACGAAAACCGGAAATTCATTCAGTTTTCCATCATGGATGCAATCTTT 1796
Query 1797 ACCGGCAGGCAAAAGCATGGAATTTGTCTATATCCACTCAGCAGCTTCTCCGGCAGATGT 1856
||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1797 ACCATCAGGCAAAAGCATGGAATTTGTCTATATCCACTCAGC---TTCTCCGGCAGATGT 1853
Query 1857 CTTGGTCTCTAACTATTCTTTGGAGTGA 1884
|||||| ||||||||||||||||| |||
Sbjct 1854 CTTGGTTTCTAACTATTCTTTGGAATGA 1881
> AT1G64390.1 | Symbols: AtGH9C2, GH9C2 | glycosyl hydrolase 9C2
| chr1:23911119-23915229 FORWARD LENGTH=2660
Length=2660
Score = 680 bits (368), Expect = 0.0
Identities = 1074/1408 (76%), Gaps = 76/1408 (5%)
Strand=Plus/Plus
Query 85 CAAGCTCTAAGCAAAAG-CATTCTCTTCTTTGAAGCTCAGAGATCAGGACACCTCCCTCC 143
|||||||| ||| || | |||||||||| |||||||||||||| || || ||||
Sbjct 292 CAAGCTCTTTCCAAGAGTC-TTCTCTTCTTCGAAGCTCAGAGATCTGGTGTTCTTCCTCG 350
Query 144 TAACCAGAGAGTTTCATGGCGATCTCATTCCGGTCTTTA-CGATGGCAAATCAAGTGGCG 202
|||||| ||||| | ||||| ||||| ||||||| | | ||| ||||||||||| ||||
Sbjct 351 TAACCAAAGAGTCACTTGGCGCTCTCACTCCGGTC-TCACCGACGGCAAATCAAGCGGCG 409
Query 203 TGGATCTAGTGGGAGGATATTATGACGCCGGAGACAATGTGAAATTCGGGCTCCCAATGG 262
|| |||| || ||||| || || ||||||||||||||||||||||| || | || ||||
Sbjct 410 TGAATCTGGTCGGAGGTTACTACGACGCCGGAGACAATGTGAAATTTGGATTACCGATGG 469
Query 263 CTTTCACGGTGACAACAAT-GTGTTGGAGCATCATCGAATACGGTG-GCCAGCTGA-AAT 319
||||||||||||| | || | | ||||| | || || ||||| | || | | ||
Sbjct 470 CTTTCACGGTGACGATGATGGCG-TGGAGTGTGATTGAGTACGG-GAATCA-ATTACAAG 526
Query 320 CTAACGGCGAACTTGGTCA-TGCCATTGACGCCGTTAAGTGGGGAACTGATTATTTCATT 378
| |||||||| ||||| | | ||||||||||| |||| ||||| ||||||||||||||
Sbjct 527 CCAACGGCGAGCTTGGAAACT-CCATTGACGCCATTAAATGGGGTACTGATTATTTCATC 585
Query 379 AAAACCCACCCTGAACCTAACGTCCTCTATGGAGAGGTGGGAGATGGTAAGTCGGACCAT 438
||| |||| ||||| || |||||||| || || ||||| |||||||| || | ||||||
Sbjct 586 AAAGCCCATCCTGAGCCCAACGTCCTTTACGGCGAGGTTGGAGATGGCAACACCGACCAT 645
Query 439 TATTGTTGGCAAAGGCCAGAGGAAATGACCACTGATCGTAAGGCTTACAAAATTGA-CCG 497
|| |||||||| || || || |||||||| || || || || ||||||| || || ||
Sbjct 646 TACTGTTGGCAGAGACCGGAAGAAATGACGACGGACCGGAAAGCTTACAGGATAGATCC- 704
Query 498 GAACAATCCCGGTTCAGAT-TTAGCCGGAGAAACCGCTGCCGCAATGGCTGCGGCTTCCA 556
|| |||||||| || ||| || ||||||||||| || ||||| ||||| || || || |
Sbjct 705 GAGTAATCCCGGGTCGGATCTT-GCCGGAGAAACAGCAGCCGCCATGGCCGCCGCATCAA 763
Query 557 TCGTTTTCCGCCGCTCTGATCCAT-CATACTCT--GCTGAGCTACTC-CGTCACGCCCAT 612
| ||||||||||| ||| | || | |||||| ||| | |||||| | ||||||| ||
Sbjct 764 TTGTTTTCCGCCGATCT-AACCCTGTTTACTCTAGGCT-A-CTACTCAC-TCACGCCTAT 819
Query 613 CAGCTATTTGAATTT-GCGGACAAATACAGAGGCAAATATGACAGTAGCATTACCGTGGC 671
||| | |||| |||| || |||||||||||||| ||||| ||||| || || || || ||
Sbjct 820 CAGTTGTTTG-ATTTCGCCGACAAATACAGAGGAAAATACGACAGCAGTATCACTGTTGC 878
Query 672 ACAAAAATACTACCGATCCGTCAGCGGTTACAATGATGAATTACTATGGGCTGCTGCATG 731
|| |||||||||||||||||||||||||||||||| || ||| | ||||| ||||| ||
Sbjct 879 CCAGAAATACTACCGATCCGTCAGCGGTTACAATGACGAGTTATTGTGGGCCGCTGCGTG 938
Query 732 GTTATACCAAGCAACCAATGATAAATAT-TATCTAG-ATTACCTCGG-CAAGAATGGTGA 788
| |||||||||| | || || | | | || || | | ||| | || | || |||||
Sbjct 939 GCTATACCAAGCTTCGAACAATCAGT-TCTA-CTTGGACTACTTGGGTCGC-AACGGTGA 995
Query 789 CTCAATGGGCGGTACGGGCTGGTCGATGACTGAATTTGGTTGGGACGTTAAGTATGCTGG 848
| | ||||| ||||| || ||||| |||||||| |||||||||||||||||||| |||||
Sbjct 996 CGCCATGGGTGGTACCGGTTGGTCCATGACTGAGTTTGGTTGGGACGTTAAGTACGCTGG 1055
Query 849 CGTTCAAACCCTTGTCGCTAAGGTTTTGATGCAAGGGAAAGGTGGA-GAACACACTGCC- 906
|||||||||||||| || ||| ||||||||||||| |||| ||| | ||| | ||
Sbjct 1056 TGTTCAAACCCTTGTTGCCAAGTTTTTGATGCAAGGCAAAGCAGGACGT-CACGCA-CCT 1113
Query 907 GTGTTCGAGCG--GTACCAACAGAAAGCAGAA-CAGTTTATGTGTTCGTTGTTAGGTAAA 963
|||||| || | ||| ||| ||||||| || | ||||||||||| ||||| ||||||
Sbjct 1114 GTGTTC-AG-GAAGTATCAAGAGAAAGCTGATTCC-TTTATGTGTTCCTTGTTGGGTAAA 1170
Query 964 AGCACGAAGAACATTAAGAAAACTCCCGGCGGTCTAATTTTCCGACAAAGCTGGAACAAT 1023
||| ||| ||||||| |||| || || || ||| | |||||| ||||| | |||||||||
Sbjct 1171 AGCTCGAGGAACATTCAGAAGACACCAGGTGGTTTGATTTTCAGACAACGTTGGAACAAT 1230
Query 1024 ATGCAGTTTGTCACGAGTGCCTCTTTCTT-AGCCGCCGTTTACTCCGACTATCTCTCTTC 1082
|||||||||||||| || || || ||||| | || | |||||||| || || || ||||
Sbjct 1231 ATGCAGTTTGTCACAAGCGCTTCCTTCTTGA-CCACGGTTTACTCAGATTACCTAACTTC 1289
Query 1083 ATC-CAAAAG-AGATCTCC-GTTGTTCTCAAGGAAACATTTCTC-CATCC-CAACTCCTA 1137
|| | || | | | || | ||| | | || || || || | | | | || || ||
Sbjct 1290 TTCTCGAA-GCA-A-CTTGAGATGTGC-CGCGGGAA-ATGTCGCACCTTCGCAGCTTCTT 1344
Query 1138 GA-TTT-CTCAAAATCACAGGTGGATTACATTCTCGGAGACAACCCTAGAGCGACAAGTT 1195
||| || ||| || ||||||||||| ||||| ||||| ||||| ||||| || || |
Sbjct 1345 TCCTTTGCT-AAA-TCTCAGGTGGATTATATTCTTGGAGATAACCCGAGAGCTACCAGCT 1402
Query 1196 ACATGGTCGGATACGG-AGAGAACTATCCA-C-GACAAGTTCATCATC-GTGGTTCGTCT 1251
||||||| || || || | | || | ||| | || | ||||| || | | || || ||
Sbjct 1403 ACATGGTTGGTTATGGTA-ACAATT-TCCCTCAGAGA-GTTCACCA-CAGAGGCTCTTCC 1458
Query 1252 ATTGTCTCCT-TCAATGTCGATCAAA-AGTTCGTGACTTGCCGTGGCGGTTACGCCACAT 1309
|| ||||| | |||| || || | | | || || || ||||| || || || ||||| |
Sbjct 1459 ATCGTCTC-TGTCAAGGTGGACCGTACATTT-GTCACCTGCCGAGGTGGATATGCCACTT 1516
Query 1310 GGTTTAGCCGCAAAGGAAGCGATCCGAATGTTTTAACCGGAGCTATAGTGGGTGGACCC- 1368
|||| ||||| ||||| || || ||||| || | || || ||||| || ||||| |||
Sbjct 1517 GGTTCAGCCGTAAAGGCAGTGACCCGAACCTTCTCACTGGTGCTATTGTCGGTGG-CCCT 1575
Query 1369 GACGCATACGATAACTTCGCTGACCAACG-G-GACAATTATGAGCAAACCGAACCAGCAA 1426
|| || ||||| || ||||||||| | | | || || |||||||| || || || || |
Sbjct 1576 GATGCTTACGACAATTTCGCTGAC-AG-GAGAGATAACTATGAGCAGACTGAGCCTGCTA 1633
Query 1427 CTTACAACAACGCGCCACTTCTTGGTGT 1454
|||||||||| || ||||| ||||||||
Sbjct 1634 CTTACAACAATGCACCACTCCTTGGTGT 1661
> AT1G70710.1 | Symbols: ATGH9B1, CEL1, GH9B1 | glycosyl hydrolase
9B1 | chr1:26659132-26663010 REVERSE LENGTH=1751
Length=1751
Score = 67.6 bits (36), Expect = 4e-10
Identities = 78/97 (80%), Gaps = 8/97 (8%)
Strand=Plus/Plus
Query 1153 CAGGTGGATTACATTCTCGGAGACAACCCTA-GAGCGACAAGT-T-ACATGGTCGGATAC 1209
||||||||||||||||||||||||||||| | | | ||| || | ||||||| ||||||
Sbjct 1192 CAGGTGGATTACATTCTCGGAGACAACCCGATG-G-GACT-GTCTTACATGGTTGGATAC 1248
Query 1210 GGAGAGAACTATCCACG-ACAAGTTCATCATCGTGGT 1245
|| | || | |||||| | | ||||||| ||||||
Sbjct 1249 GGTCAAAAGTTTCCACGTAGGA-TTCATCACCGTGGT 1284
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 93272612610
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5